The effects of timing of fine needle aspiration biopsies on gene expression profiles in breast cancers

BMC Cancer

Volumn 8, Issue , 2008, Pages

  Wong, Vietty ^a   Wang, Dong Yu ^a   Warren, Keisha ^a   Kulkarni, Supriya ^a   Boerner, Scott ^a   Done, Susan Jane ^a,b,c   Leong, Wey Liang ^a,d  

^a PRINCESS MARGARET HOSPITAL   (Canada)

^b Department of Pathobiology ^*  (Canada)

^c UNIVERSITY OF TORONTO   (Canada)

^d UNIVERSITY HEALTH NETWORK   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN FOS; TUMOR MARKER;

ARTICLE; ASPIRATION BIOPSY; BREAST CANCER; BREAST CARCINOGENESIS; BREAST SURGERY; CLINICAL ARTICLE; CONTROLLED STUDY; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE FUNCTION; HUMAN; HUMAN TISSUE; HYPOXIA; NUCLEOTIDE SEQUENCE; POSTOPERATIVE PERIOD; PREOPERATIVE PERIOD; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TIME; ADULT; BREAST; BREAST TUMOR; CELL HYPOXIA; CLUSTER ANALYSIS; FEMALE; GENETICS; METABOLISM; METHODOLOGY; NEEDLE BIOPSY; ONCOGENE; PATHOLOGY;

ADULT; BIOPSY, FINE-NEEDLE; BREAST; BREAST NEOPLASMS; CELL HYPOXIA; CLUSTER ANALYSIS; FEMALE; GENE EXPRESSION PROFILING; GENES, FOS; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TIME FACTORS; TUMOR MARKERS, BIOLOGICAL;

EID: 54149093717     PISSN: None     EISSN: 14712407     Source Type: Journal    
DOI: 10.1186/1471-2407-8-277     Document Type: Article

References (47)

1. Bertucci F Finetti P Rougemont J Charafe-Jauffret E Cervera N Tarpin C Nguyen C Xerri L Houlgatte R Jacquemier J Viens P Birnbaum D Gene expression profiling identifies molecular subtypes of inflammatory breast cancer Cancer Res 2005, 65:2170-2178. 15781628
2. Huang E Cheng SH Dressman H Pittman J Tsou MH Horng CF Bild A Iversen ES Liao M Chen CM West M Nevins JR Huang AT Gene expression predictors of breast cancer outcomes Lancet 2003, 361:1590-1596. 12747878
3. Ma XJ Wang Z Ryan PD Isakoff SJ Barmettler A Fuller A Muir B Mohapatra G Salunga R Tuggle JT Tran Y Tran D Tassin A Amon P Wang W Wang W Enright E Stecker K Estepa-Sabal E Smith B Younger J Balis U Michaelson J Bhan A Habin K Baer TM Brugge J Haber DA Erlander MG Sgroi DC A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen Cancer Cell 2004, 5:607-616. 15193263
4. Perou CM Sørlie T Eisen MB Rijn van de M Jeffrey SS Rees CA Pollack JR Ross DT Johnsen H Akslen LA Fluge O Pergamenschikov A Williams C Zhu SX Lønning PE Børresen-Dale AL Brown PO Botstein D Molecular portraits of human breast tumours Nature 2000, 406:747-752. 10963602
5. Sørlie T Perou CM Tibshirani R Aas T Geisler S Johnsen H Hastie T Eisen MB Rijn van de M Jeffrey SS Thorsen T Quist H Matese JC Brown PO Botstein D Eystein Lønning P Børresen-Dale AL Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications Proc Natl Acad Sci U S A 2001, 98(19):10869-10874. 11553815 11553815 58566
6. Sorlie T Tibshirani R Parker J Hastie T Marron JS Nobel A Deng S Johnsen H Pesich R Geisler S Demeter J Perou CM Lønning PE Brown PO Børresen-Dale AL Botstein D Repeated observation of breast tumor subtypes in independent gene expression data sets Proc Natl Acad Sci USA 2003, 100:8418-8423. 166244 12829800
7. Sotiriou C Neo SY McShane LM Korn EL Long PM Jazaeri A Martiat P Fox SB Harris AL Liu ET Breast cancer classification and prognosis based on gene expression profiles from a population-based study Proc Natl Acad Sci USA 2003, 100:10393-10398. 193572 12917485
8. van't Veer LJ Dai H Vijver van de MJ He YD Hart AA Mao M Peterse HL Kooy van der K Marton MJ Witteveen AT Schreiber GJ Kerkhoven RM Roberts C Linsley PS Bernards R Friend SH Gene expression profiling predicts clinical outcome of breast cancer Nature 2002, 415:530-536. 11823860
9. Zhao H Langerod A Ji Y Nowels KW Nesland JM Tibshirani R Bukholm IK Karesen R Botstein D Borresen-Dale AL Jeffrey SS Different gene expression patterns in invasive lobular and ductal carcinomas of the breast Mol Biol Cell 2004, 15:2523-2536. 420079 15034139
10. Bammler T Beyer RP Bhattacharya S Boorman GA Boyles A Bradford BU Bumgarner RE Bushel PR Chaturvedi K Choi D Cunningham ML Deng S Dressman HK Fannin RD Farin FM Freedman JH Fry RC Harper A Humble MC Hurban P Kavanagh TJ Kaufmann WK Kerr KF Jing L Lapidus JA Lasarev MR Li J Li YJ Lobenhofer EK Lu X Malek RL Milton S Nagalla SR O'Malley JP Palmer VS Pattee P Paules RS Perou CM Phillips K Qin LX Qiu Y Quigley SD Rodland M Rusyn I Samson LD Schwartz DA Shi Y Shin JL Sieber SO Slifer S Speer MC Spencer PS Sproles DI Swenberg JA Suk WA Sullivan RC Tian R Tennant RW Todd SA Tucker CJ Van Houten B Weis BK Xuan S Zarbl H Members of the Toxicogenomics Research Consortium Standardizing global gene expression analysis between laboratories and across platforms Nat Methods 2005, 2:351-356. 15846362
11. Symmans WF Ayers M Clark EA Stec J Hess KR Sneige N Buchholz TA Krishnamurthy S Ibrahim NK Buzdar AU Theriault RL Rosales MF Thomas ES Gwyn KM Green MC Syed AR Hortobagyi GN Pusztai L Total RNA yield and microarray gene expression profiles from fine-needle aspiration biopsy and core needle biopsy samples of breast carcinoma Cancer 2003, 97:2960-2971. 12784330
12. Ernst LM Rimm DL Quantitative examination of mechanophysical tumor cell enrichment in fine-needle aspiration specimens Cancer 2002, 96:275-279. 12378594
13. Ayers M Symmans WF Stec J Damokosh AI Clark E Hess K Lecocke M Metivier J Booser D Ibrahim N Valero V Royce M Arun B Whitman G Ross J Sneige N Hortobagyi GN Pusztai L Gene expression profiles predict complete pathologic response to neoadjuvant paclitaxel and fluorouracil, doxorubicin, and cyclophosphamide chemotherapy in breast cancer J Clin Oncol 2004, 22:2284-2293. 15136595
14. Chang J Ormerod M Powles TJ Allred DC Ashley SE Dowsett M Apoptosis and proliferation as predictors of chemotherapy response in patients with breast carcinoma Cancer 2000, 89:2145-2152. 11147583
15. Pusztai L Ayers M Stec J Clark E Hess K Stivers D Damokosh A Sneige N Buchholz TA Esteva FJ Arun B Cristofanilli M Booser D Rosales M Valero V Adams C Hortobagyi GN Symmans WF Gene expression profiles obtained from fine-needle aspiration of breast cancer reliably identify routine prognostic markers and reveal large-scale molecular differences between estrogen negative and estrogen-positive tumors Clin Cancer Res 2003, 9:2406-2415. 12855612
16. Sotiriou C Powles TJ Dowsett M Jazaeri AA Feldman AL Assersohn L Gadisetti C Libutti SK Liu ET Gene expression profiles derived from fine needle aspiration correlate with response to systemic chemotherapy in breast cancer Breast Cancer Res 2002, 4:R3. 111028 12052255
17. Symmans WF Volm MD Shapiro RL Perkins AB Kim AY Demaria S Yee HT McMullen H Oratz R Klein P Formenti SC Muggia F Paclitaxel-induced apoptosis and mitotic arrest assessed by serial fine-needle aspiration: implications for early prediction of breast cancer response to neoadjuvant treatment Clin Cancer Res 2000, 6:4610-4617. 11156210
18. University Health Network Microarrays Centre (University Health Network, Toronto, On) experimental protocols http://www.microarrays.ca/support/ proto.html
19. The National Center for Biotechnology Information Gene Expression Omnibus depository http://www.ncbi.nlm.nih.gov/projects/geo/
20. Müller JM Krauss B Kaltschmidt C Baeuerle PA Rupec RA Hypoxia Induces c-fos Transcription via a Mitogen-activated Protein Kinase-dependent Pathway J Biol Chem 1997, 272:23435-23439. 9287359
21. Polacek DC Passerini AG Shi C Francesco NM Manduchi E Grant GR Powell S Bischof H Winkler H Stoeckert CJ Jr Davies PF Fidelity and enhanced sensitivity of differential transcription profiles following linear amplification of nanogram amounts of endothelial mRNA Physiol Genomics 2003, 13:147-156. 12700361
22. Zhou J Jin Y Gao Y Wang H Hu G Huang Y Chen Q Feng M Wu C Genomic-scale analysis of gene expression profiles in TNF-α treated human umbilical vein endothelial cells Inflamm Res 2002, 51:332-341. 12146724
23. Baugh LR Hill AA Brown EL Hunter CP Quantitative analysis of mRNA amplification by in vitro transcription Nucleic Acids Res 2001, 29:E29. 29742 11222780
24. Tun HW Personett D Baskerville KA Menke DM Jaeckle KA Kreinest P Edenfield B Zubair AC O'Neill BP Lai WR Park PJ McKinney M Pathway analysis of primary central nervous system lymphoma Blood 2008, 111:3200-3210. 2265457 18184868
25. Lathem WW Crosby SD Miller VL Goldman WE Progression of primary pneumonic plague: A mouse model of infection, pathology, and bacterial transcriptional activity Proc Natl Acad Sci USA 2005, 102:17786-17791. 1308902 16306265
26. Schuetz CS Bonin M Clare SE Nieselt K Sotlar K Walter M Fehm T Solomayer E Riess O Wallwiener D Kurek R Neubauer HJ Progression-Specific Genes Identified by Expression Profiling of Matched Ductal Carcinomas In situ and Invasive Breast Tumors, Combining Laser Capture Microdissection and Oligonucleotide Microarray Analysis Cancer Res 2006, 66:5278-5286. 16707453
27. Ahrén D Tholander M Fekete C Rajashekar B Friman E Johansson T Tunlid A Comparison of gene expression in trap cells and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum Microbiology 2005, 151:789-803. 15758225
28. Sekiguchi N Kawauchi S Furuya T Inaba N Matsuda K Ando S Ogasawara M Aburatani H Kameda H Amano K Abe T Ito S Takeuchi T Messenger ribonucleic acid expression profile in peripheral blood cells from RA patients following treatment with an anti-TNF-alpha monoclonal antibody, infliximab Rheumatology (Oxford) 2008, 47:780-788. 18388148
29. Rise ML Jones SR Brown GD von Schalburg KR Davidson WS Koop BF Microarray analyses identify molecular biomarkers of Atlantic salmon macrophage and hematopoietic kidney response to Piscirickettsia salmonis infection Physiol Genomics 2004, 20:21-35. 15454580
30. Premkumar DR Adhikary G Overholt JL Simonson MS Cherniack NS Prabhakar NR Intracellular pathways linking hypoxia to activation of c-fos and AP-1 Adv Exp Med Biol 2000, 475:101-109. 10849652
31. Spruessel A Steimann G Jung M Lee SA Carr T Fentz AK Spangenberg J Zornig C Juhl HH David KA Tissue ischemia time affects gene and protein expression patterns within minutes following surgical tumor excision Biotechniques 2004, 36:1030-1037. 15211754
32. Mishra RR Adhikary G Simonson MS Cherniack NS Prabhakar NR Role of c-fos in hypoxia-induced AP-1 cis-element activity and tyrosine hydroxylase gene expression Brain Res Mol Brain Res 1998, 59:74-83. 9729288
33. Glodberg MA Schneider TJ Similarities between the oxygen sensing mechanisms regulating the expression of vascular endothelin growth factor and erythopoietin J Biol Chem 1994, 269:4355-4359. 8308005
34. Goldberg MA Gaut CC Bunn HF Erythropoietin protein mRNA levels are governed by both the rate of gene transcription and post transcriptional events Blood 1991, 77:271-277. 1985693
35. Prabhakar NR Pieramici SF Premkumar DRD Kumar GK Kalaria RN Activation of nitric oxide synthase gene expression by hypoxia in central and peripheral neurons Mol Brain Res 1996, 43:341-346. 9037552
36. Kourembanas S Marsden PA McQuillan LP Faller DV Hypoxia induces endothelin gene expression and secretion in cultured human endothelium J Clin Invest 1991, 88:1054-1057. 295521 1885767
37. Firth JD Ebert BL Ratcliffe PJ Hypoxic regulation of lactate dehydrogenase A. Interaction between hypoxia-inducible factor 1 and cAMP response elements J Biol Chem 1995, 270:21021-21027. 7673128
38. Semenza GL Roth PH Fang HM Wang GL Transcriptional regulation of genes encoding glycolytic enzymes by hypoxia-inducible factor 1 J Biol Chem 1994, 269:23757-23763. 8089148
39. Patiar S Harris AL Role of hypoxia-inducible factor-1alpha as a cancer therapy target Endocr Relat Cancer 2006, 13:S61-S75. 17259560
40. Alfranca A Gutiérrez MD Vara A Aragonés J Vidal F Landázuri MO Role of c-fos in hypoxia-induced AP-1 cis-element activity and tyrosine hydroxylase gene expression Mol Cell Biol 2002, 22:12-22. 134229 11739718
41. Bièche I Lerebours F Tozlu S Espie M Marty M Lidereau R Molecular profiling of inflammatory breast cancer: Identification of a poor-prognosis gene expression signature Clin Cancer Res 2004, 10:6789-6795. 15501955
42. Bland KI Konstadoulakis MM Vezeridis MP Wanebo HJ Oncogene protein co-expression value of Ha-ras, c-myc, c-fos, and p53 as prognostic discriminants for breast carcinoma Ann Surg 1995, 221:706-720. 1234700 7794075
43. Langer S Singer CF Hudelist G Dampier B Kaserer K Vinatzer U Pehamberger H Zielinski C Kubista E Schreibner M Jun and Fos family protein expression in human breast cancer: Correlation of protein expression and clinicopathological parameters Eur J Gynaecol Oncol 2006, 27:345-352. 17009623
44. Lu C Shen Q DuPre E Kim H Hilsenbeck S Brown PH cFos is critical for MCF-7 breast cancer cell growth Oncogene 2005, 24:6516-6524. 16027729
45. Ozanne BW Spence HJ McGarry LC Hennigan RF Transcription factors control invasion: AP-1 the first among equals Oncogene 2007, 26:1-10. 16799638
46. Hennigan RF Hwaker KL Ozanne BW Fos-transformation activates genes associated with invasion Oncogene 1994, 9:3591-3600. 7970719
47. Tkach V Tulchinsky E Lukanidin E Vinson C Bock E Berezin V Role of the Fos family members, c-Fos, Fra-1 and Fra-2, in the regulation of cell motility Oncogene 2003, 22:5045-5054. 12902987