-
1
-
-
0031954925
-
Genome-wide analyses of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
-
2143985 9568909
-
Wallin E von Heijne G Genome-wide analyses of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms Protein Science 1998, 7(4):1029-1038. 2143985 9568909
-
(1998)
Protein Science
, vol.7
, Issue.4
, pp. 1029-1038
-
-
Wallin, E.1
von Heijne, G.2
-
2
-
-
0033552649
-
Proportion of membrane proteins in proteomes of 15 single-cell organisms analyzed by the SOSUI prediction system
-
SBC Sonoyama 10631799
-
Mitaku S Ono M Hirokawa T M SBC Sonoyama Proportion of membrane proteins in proteomes of 15 single-cell organisms analyzed by the SOSUI prediction system Biophysical Chemistry 1999, 82(2-3):165-171. 10631799
-
(1999)
Biophysical Chemistry
, vol.82
, Issue.2-3
, pp. 165-171
-
-
Mitaku, S.1
Ono, M.2
Hirokawa, T.M.3
-
4
-
-
0031614678
-
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences
-
AAAI Glasgow JI, Littlejohn TG, Major F, Lathrop RH, Sankoff D, Sensen C
-
Sonnhammer ELL von Heijne G Krogh A A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences ISMB. AAAI Glasgow JI, Littlejohn TG, Major F, Lathrop RH, Sankoff D, Sensen C 1998, 175-182. 9783223
-
(1998)
ISMB
, pp. 175-182
-
-
Sonnhammer, E.L.L.1
von Heijne, G.2
Krogh, A.3
-
5
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
11590105
-
Tusnády GE Simon I The HMMTOP transmembrane topology prediction server Bioinformatics 2001, 17(9):849-850. 11590105
-
(2001)
Bioinformatics
, vol.17
, Issue.9
, pp. 849-850
-
-
Tusnády, G.E.1
Simon, I.2
-
6
-
-
3042579686
-
Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information
-
2279939 15215532
-
Viklund H Elofsson A Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information Protein Science 2004, 13(7):1908-1917. 2279939 15215532
-
(2004)
Protein Science
, vol.13
, Issue.7
, pp. 1908-1917
-
-
Viklund, H.1
Elofsson, A.2
-
7
-
-
0029978247
-
HTP: A neural network-based method for predicting the topology of helical transmembrane domains in proteins
-
8670618
-
Fariselli P Casadio R HTP: A neural network-based method for predicting the topology of helical transmembrane domains in proteins Computer Applications in the Biosciences 1996, 12:41-48. 8670618
-
(1996)
Computer Applications in the Biosciences
, vol.12
, pp. 41-48
-
-
Fariselli, P.1
Casadio, R.2
-
8
-
-
1842688091
-
Neural network-based prediction of transmembrane-strand segments in outer membrane proteins
-
14978719
-
Gromiha MM Ahmad S Suwa M Neural network-based prediction of transmembrane-strand segments in outer membrane proteins Journal of Computational Chemistry 2004, 25(5):762-767. 14978719
-
(2004)
Journal of Computational Chemistry
, vol.25
, Issue.5
, pp. 762-767
-
-
Gromiha, M.M.1
Ahmad, S.2
Suwa, M.3
-
9
-
-
0032989348
-
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: The PRED-TMR algorithm
-
10360978
-
Pasquier C Promponas V Palaios G Hamodrakas J Hamodrakas S A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: The PRED-TMR algorithm Protein Eng 1999, 12(5):381-385. 10360978
-
(1999)
Protein Eng
, vol.12
, Issue.5
, pp. 381-385
-
-
Pasquier, C.1
Promponas, V.2
Palaios, G.3
Hamodrakas, J.4
Hamodrakas, S.5
-
10
-
-
33751012740
-
Recognition of Transmembrane Segments in Proteins: Review and Consistency-based Benchmarking of Internet Servers
-
Sadovskaya NS Sutormin RA Gelfand MS Recognition of Transmembrane Segments in Proteins: Review and Consistency-based Benchmarking of Internet Servers J Bioinformatics and Computational Biology 2006, 4(5):1033-1056.
-
(2006)
J Bioinformatics and Computational Biology
, vol.4
, Issue.5
, pp. 1033-1056
-
-
Sadovskaya, N.S.1
Sutormin, R.A.2
Gelfand, M.S.3
-
11
-
-
13244259253
-
Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method
-
545999 15647112
-
Bagos PG Liakopoulos T Hamodrakas SJ Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method BMC Bioinformatics 2005, 6:7. 545999 15647112
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 7
-
-
Bagos, P.G.1
Liakopoulos, T.2
Hamodrakas, S.J.3
-
12
-
-
33947213875
-
Membrane protein prediction methods
-
1934899 17367718
-
Punta M Forrest L Bigelow H Kernytsky A Liu J Rost B: Membrane protein prediction methods. Methods 2007, 41(4):460-74.
-
(2007)
Methods
, vol.41
, Issue.4
, pp. 460-474
-
-
Punta, M.1
Forrest, L.2
Bigelow, H.3
Kernytsky, A.4
Liu, J.5
Rost, B.6
-
13
-
-
0037079055
-
The language of genes
-
12432405
-
Searls DB The language of genes Nature 2002 420 211 217 http://www.isrl.uiuc.edu/~amag/langev/paper/searls02languageOfGenes.html 12432405
-
(2002)
Nature
, vol.420
, pp. 211-217
-
-
Searls, D.B.1
-
14
-
-
49949150022
-
Language identification in the limit
-
Gold EM Language identification in the limit Information and Control 1967, 10:447-474.
-
(1967)
Information and Control
, vol.10
, pp. 447-474
-
-
Gold, E.M.1
-
15
-
-
0000106131
-
Inductive inference of formal languages from positive data
-
Angluin D Inductive inference of formal languages from positive data Information and Control 1980, 45:117-135.
-
(1980)
Information and Control
, vol.45
, pp. 117-135
-
-
Angluin, D.1
-
16
-
-
0020815483
-
Inductive inference: Theory and Methods
-
Angluin D Smith C Inductive inference: Theory and Methods Computing Surveys 1983, 15(3):237-269.
-
(1983)
Computing Surveys
, vol.15
, Issue.3
, pp. 237-269
-
-
Angluin, D.1
Smith, C.2
-
18
-
-
84886754719
-
-
HMMTOP 2.0 webserver http://www.enzim.hu/hmmtop/
-
-
-
-
19
-
-
84886766952
-
-
PHOBIUS webserver http://phobius.sbc.su.se
-
-
-
-
20
-
-
34547584314
-
Advantages of combined transmembrane topology and signal peptide prediction - The Phobius web server
-
(Web-Server)
-
Käll L Krogh A Sonnhammer ELL Advantages of combined transmembrane topology and signal peptide prediction - the Phobius web server Nucleic Acids Research 2007, 35(Web-Server):429-432.
-
(2007)
Nucleic Acids Research
, pp. 429-432
-
-
Käll, L.1
Krogh, A.2
Sonnhammer, E.L.L.3
-
21
-
-
2142657817
-
A combined transmembrane topology and signal peptide prediction method
-
15111065
-
Käll L Krogh A Sonnhammer ELL A combined transmembrane topology and signal peptide prediction method J Mol Biol 2004, 338(5):1027-36. 15111065
-
(2004)
J Mol Biol
, vol.338
, Issue.5
, pp. 1027-1036
-
-
Käll, L.1
Krogh, A.2
Sonnhammer, E.L.L.3
-
22
-
-
84886755574
-
-
TMpred webserver http://www.ch.embnet.org/software/TMPRED_form.html
-
-
-
-
23
-
-
0000207681
-
TMBASE - A database of membrane spanning protein segments
-
Hofmann K Stoffel W TMBASE - A database of membrane spanning protein segments Biol Chem Hoppe-Seyler 1993, 374-166.
-
(1993)
Biol Chem Hoppe-Seyler
, vol.374
-
-
Hofmann, K.1
Stoffel, W.2
-
24
-
-
34047151404
-
Improving the accuracy of transmembrane protein topology prediction using evolutionary information
-
17237066
-
Jones DT Improving the accuracy of transmembrane protein topology prediction using evolutionary information Bioinformatics 2007, 23(5):538-544. 17237066
-
(2007)
Bioinformatics
, vol.23
, Issue.5
, pp. 538-544
-
-
Jones, D.T.1
-
26
-
-
0006776326
-
Learning k-testable tree sets from positive data
-
Universidad Politécnica de Valencia
-
García P learning k-testable tree sets from positive data Tech rep DSIC, Universidad Politécnica de Valencia 1993. http://www.dsic.upv.es/users/tlcc/tlcc.html
-
(1993)
Tech Rep
-
-
García, P.1
-
27
-
-
0032180266
-
Learning Local Languages and Their Application to DNA Sequence Analysis
-
Yokomori T Kobayashi S Learning Local Languages and Their Application to DNA Sequence Analysis IEEE Trans Pattern Anal Mach Intell 1998, 20(10):1067-1079.
-
(1998)
IEEE Trans Pattern Anal Mach Intell
, vol.20
, Issue.10
, pp. 1067-1079
-
-
Yokomori, T.1
Kobayashi, S.2
-
28
-
-
0037249645
-
TMPDB: A database of experimentally-characterized transmembrane topologies
-
165467 12520035
-
Ikeda M Arai M Okuno T Shimizu T TMPDB: A database of experimentally-characterized transmembrane topologies Nucleic Acids Research 2003, 31:406-409. 165467 12520035
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 406-409
-
-
Ikeda, M.1
Arai, M.2
Okuno, T.3
Shimizu, T.4
-
30
-
-
0035109170
-
MPtopo: A database of membrane protein topology
-
2373945 11266632
-
Jayasinghe S Hristova K White SH MPtopo: A database of membrane protein topology Protein Sci 2001, 10:455-458. 2373945 11266632
-
(2001)
Protein Sci
, vol.10
, pp. 455-458
-
-
Jayasinghe, S.1
Hristova, K.2
White, S.H.3
-
32
-
-
33745396005
-
Detection of functional motifs in biosequences: A grammatical inference approach
-
Univ. Politécnica de Catalunya
-
Lopez D Cano A Vazquez de Parga M Calles B Sempere J Perez T Ruiz J Garcia P Detection of functional motifs in biosequences: A grammatical inference approach Proc of the 5th Annual Spanish Bioinformatics Conference Univ. Politécnica de Catalunya 2004, 72-75.
-
(2004)
Proc of the 5th Annual Spanish Bioinformatics Conference
, pp. 72-75
-
-
Lopez, D.1
Cano, A.2
Vazquez de Parga, M.3
Calles, B.4
Sempere, J.5
Perez, T.6
Ruiz, J.7
Garcia, P.8
-
33
-
-
33750338102
-
MOtif discovery by k-tss grammatical inference
-
Paliouras G, de la Higuera C, Oates T, Van Zaanen M
-
Lopez D Cano A Vazquez de Parga M Calles B Sempere J Perez T Campos M Ruiz J Garcia P MOtif discovery by k-tss grammatical inference Proc of the IJCAI-05 Workshop on Grammatical Inference Applications: Successes and Future Challenges Paliouras G, de la Higuera C, Oates T, Van Zaanen M 2005.
-
(2005)
Proc of the IJCAI-05 Workshop on Grammatical Inference Applications: Successes and Future Challenges
-
-
Lopez, D.1
Cano, A.2
Vazquez de Parga, M.3
Calles, B.4
Sempere, J.5
Perez, T.6
Campos, M.7
Ruiz, J.8
Garcia, P.9
-
34
-
-
0030585734
-
Evaluation of Gene Structure Prediction Programs
-
8786136
-
Burset M Guigo R Evaluation of Gene Structure Prediction Programs Genomics 1996, 34(3):353-367. 8786136
-
(1996)
Genomics
, vol.34
, Issue.3
, pp. 353-367
-
-
Burset, M.1
Guigo, R.2
-
35
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Mathews B Comparison of the predicted and observed secondary structure of T4 phage lysozyme Biochimica Biophysica Acta 1975, 405(2):442-451.
-
(1975)
Biochimica Biophysica Acta
, vol.405
, Issue.2
, pp. 442-451
-
-
Mathews, B.1
-
36
-
-
0028064006
-
Redefining the goals of protein secondary structure prediction
-
8289237
-
B R C S R S Redefining the goals of protein secondary structure prediction J Mol Biol 1994, 235:13-26. 8289237
-
(1994)
J Mol Biol
, vol.235
, pp. 13-26
-
-
B., R.1
C., S.2
R., S.3
-
37
-
-
0001338954
-
Simplified amino acid alphabets for protein fold recognition and implications for folding
-
10775656
-
Murphy LR Wallqvist A MLevy R Simplified amino acid alphabets for protein fold recognition and implications for folding Protein Engineering 2000, 13(3):149-152. 10775656
-
(2000)
Protein Engineering
, vol.13
, Issue.3
, pp. 149-152
-
-
Murphy, L.R.1
Wallqvist, A.2
MLevy, R.3
-
38
-
-
0038451355
-
Reduction of protein sequence complexity by residue grouping
-
12826723
-
Li T Fan K Wang J Wang W Reduction of protein sequence complexity by residue grouping Protein Engineering 2003, 16(5):323-330. 12826723
-
(2003)
Protein Engineering
, vol.16
, Issue.5
, pp. 323-330
-
-
Li, T.1
Fan, K.2
Wang, J.3
Wang, W.4
-
39
-
-
0034495418
-
A collection of well characterised integral membrane proteins
-
11159338
-
Möller S Kriventseva EV Apweiler R A collection of well characterised integral membrane proteins Bioinformatics 2000, 16(12):1159-1160. 11159338
-
(2000)
Bioinformatics
, vol.16
, Issue.12
, pp. 1159-1160
-
-
Möller, S.1
Kriventseva, E.V.2
Apweiler, R.3
-
41
-
-
85028718199
-
A Characterization of Even Linear Languages and its Application to the Learning Problem
-
Springer Carrasco RC, Oncina J
-
Sempere JM García P A Characterization of Even Linear Languages and its Application to the Learning Problem ICGI, Volume 862 of Lecture Notes in Computer Science Springer Carrasco RC, Oncina J 1994, 38-44.
-
(1994)
ICGI, Volume 862 of Lecture Notes in Computer Science
, pp. 38-44
-
-
Sempere, J.M.1
García, P.2
|