메뉴 건너뛰기




Volumn 22, Issue 11, 2008, Pages 773-781

Investigation of structures and properties of cyclic peptide nanotubes by experiment and molecular dynamics

Author keywords

Cyclic peptide nanotube; Diffuse; H bonds; Molecular dynamics; Self assembly

Indexed keywords

FOURIER TRANSFORM INFRARED SPECTROSCOPY; MASS SPECTROMETRY; MOLECULAR DYNAMICS; MOLECULES; NANOTUBES; PEPTIDES; SCANNING ELECTRON MICROSCOPY; YARN;

EID: 53249129575     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-008-9212-9     Document Type: Article
Times cited : (34)

References (50)
  • 2
    • 33846979505 scopus 로고    scopus 로고
    • Controlling multiple fluorescent signal output in cyclic peptide-based supramolecular systems
    • Brea RJ, Vazquez ME, Mosquera M, Castedo L, Granja JR (2007) Controlling multiple fluorescent signal output in cyclic peptide-based supramolecular systems. J Am Chem Soc 129:1653-1657
    • (2007) J Am Chem Soc , vol.129 , pp. 1653-1657
    • Brea, R.J.1    Vazquez, M.E.2    Mosquera, M.3    Castedo, L.4    Granja, J.R.5
  • 4
    • 0035905358 scopus 로고    scopus 로고
    • Self-assembly of cyclic peptides into nanotubes and then into highly anisotropic crystalline materials
    • David G, Pierre BM (2001) Self-assembly of cyclic peptides into nanotubes and then into highly anisotropic crystalline materials. J Angew Chem Int Ed 40:4635-4638
    • (2001) J Angew Chem Int Ed , vol.40 , pp. 4635-4638
    • David, G.1    Pierre, B.M.2
  • 5
    • 0029346657 scopus 로고
    • Self-assembled nanoscale tubular ensembles
    • Ghadiri MR (1995) Self-assembled nanoscale tubular ensembles. Adv Mater 7:675-677
    • (1995) Adv Mater , vol.7 , pp. 675-677
    • Ghadiri, M.R.1
  • 6
    • 0002439206 scopus 로고
    • Conformational analysis of regular enantiomeric sequences
    • De Santis P, Morosetti S, Rizzo R (1974) Conformational analysis of regular enantiomeric sequences. Macromolecules 7:52-58
    • (1974) Macromolecules , vol.7 , pp. 52-58
    • De Santis, P.1    Morosetti, S.2    Rizzo, R.3
  • 8
    • 0028174318 scopus 로고
    • Artificial transmembrane ion channels from self-assembling peptide nanotubes
    • Ghadiri MR, Granja JR, Buehler LK (1994) Artificial transmembrane ion channels from self-assembling peptide nanotubes. Nature 369:301-304
    • (1994) Nature , vol.369 , pp. 301-304
    • Ghadiri, M.R.1    Granja, J.R.2    Buehler, L.K.3
  • 10
    • 0032513708 scopus 로고    scopus 로고
    • Oriented self-assembly of cyclic peptide nanotubes in lipid membranes
    • Kim HS, Hartgerink JD, Ghadiri MR (1998) Oriented self-assembly of cyclic peptide nanotubes in lipid membranes. J Am Chem Soc 120:4417-4424
    • (1998) J Am Chem Soc , vol.120 , pp. 4417-4424
    • Kim, H.S.1    Hartgerink, J.D.2    Ghadiri, M.R.3
  • 13
    • 0037433498 scopus 로고    scopus 로고
    • New cyclic peptide assemblies with hydrophobic cavities, The structural and thermodynamic basis of a new class of peptide nanotubes
    • Amorin M, Castedo L, Granja JR (2003) New cyclic peptide assemblies with hydrophobic cavities, The structural and thermodynamic basis of a new class of peptide nanotubes. J Am Chem Soc 125:2844-2845
    • (2003) J Am Chem Soc , vol.125 , pp. 2844-2845
    • Amorin, M.1    Castedo, L.2    Granja, J.R.3
  • 14
    • 33749121805 scopus 로고    scopus 로고
    • Synthesis of omega-(hetero)arylalkynylated alpha-amino acid by sonogashira-type reactions in aqueous media
    • Brea RJ, Lopez-Deber MP, Castedo L, Granja JR (2006) Synthesis of omega-(hetero)arylalkynylated alpha-amino acid by sonogashira-type reactions in aqueous media. J Org Chem 71:7870-7873
    • (2006) J Org Chem , vol.71 , pp. 7870-7873
    • Brea, R.J.1    Lopez-Deber, M.P.2    Castedo, L.3    Granja, J.R.4
  • 15
    • 0034614053 scopus 로고    scopus 로고
    • Cyclic peptides as molecular adapters for a pore-forming protein
    • Sanchez-Quesada J, Ghadiri MR, Bayley H, Braha O (2000) Cyclic peptides as molecular adapters for a pore-forming protein. J Am Chem Soc 122:11757-11766
    • (2000) J Am Chem Soc , vol.122 , pp. 11757-11766
    • Sanchez-Quesada, J.1    Ghadiri, M.R.2    Bayley, H.3    Braha, O.4
  • 16
    • 0032481333 scopus 로고    scopus 로고
    • Self-assembling cyclic beta(3)-peptide nanotubes as artificial transmembrane ion channels
    • Clark TD, Buehler LK, Ghadiri MR (1998) Self-assembling cyclic beta(3)-peptide nanotubes as artificial transmembrane ion channels. J Am Chem Soc 120:651-656
    • (1998) J Am Chem Soc , vol.120 , pp. 651-656
    • Clark, T.D.1    Buehler, L.K.2    Ghadiri, M.R.3
  • 17
    • 14544281493 scopus 로고    scopus 로고
    • Modulating charge transfer through cyclic D,L-alpha-peptide self-assembly
    • Horne WS, Ashkenasy N, Ghadiri MR (2005) Modulating charge transfer through cyclic D,L-alpha-peptide self-assembly. Chem Eur J 11:1137-1144
    • (2005) Chem Eur J , vol.11 , pp. 1137-1144
    • Horne, W.S.1    Ashkenasy, N.2    Ghadiri, M.R.3
  • 19
    • 8344261376 scopus 로고    scopus 로고
    • Elements for the construction of molecular devices: Template effects and self-assembly
    • Christoph AS (2004) Elements for the construction of molecular devices: template effects and self-assembly. J Phys Org Chem 17:967-972
    • (2004) J Phys Org Chem , vol.17 , pp. 967-972
    • Christoph, A.S.1
  • 20
    • 4544385006 scopus 로고    scopus 로고
    • Boolean logic functions of a synthetic peptide network
    • Ashkenasy G, Ghadiri MR (2004) Boolean logic functions of a synthetic peptide network. J Am Chem Soc 126:11140-11141
    • (2004) J Am Chem Soc , vol.126 , pp. 11140-11141
    • Ashkenasy, G.1    Ghadiri, M.R.2
  • 24
    • 33749595054 scopus 로고    scopus 로고
    • Self-assembling cyclic peptides, molecular dynamics studies of dimers in polar and nonpolar solvents
    • Khurana E, Nielsen SO, Ensing B, Klein ML (2006) Self-assembling cyclic peptides, molecular dynamics studies of dimers in polar and nonpolar solvents. J Phys Chem B 110:18965-18972
    • (2006) J Phys Chem B , vol.110 , pp. 18965-18972
    • Khurana, E.1    Nielsen, S.O.2    Ensing, B.3    Klein, M.L.4
  • 26
    • 33646379364 scopus 로고    scopus 로고
    • Ion current calculations based on three dimensional Poisson-Nernst-Planck theory for a cyclic peptide nanotube
    • Hwang H, Schatz GC, Ratner MA (2006) Ion current calculations based on three dimensional Poisson-Nernst-Planck theory for a cyclic peptide nanotube. J Phys Chem B 110:6999-7008
    • (2006) J Phys Chem B , vol.110 , pp. 6999-7008
    • Hwang, H.1    Schatz, G.C.2    Ratner, M.A.3
  • 27
    • 0001073480 scopus 로고
    • Supramolecular design by covalent capture. design of a peptide cylinder via hydrogen-bond-promoted intermolecular olefin metathesis
    • Clark TD, Ghadiri MR (1995) Supramolecular design by covalent capture. design of a peptide cylinder via hydrogen-bond-promoted intermolecular olefin metathesis. J Am Chem Soc 117:12364-12365
    • (1995) J Am Chem Soc , vol.117 , pp. 12364-12365
    • Clark, T.D.1    Ghadiri, M.R.2
  • 28
    • 1642280493 scopus 로고    scopus 로고
    • Self-assembling peptide nanotubes from enantiomeric pairs of cyclic peptides with alternating D and L amino acid residues
    • Rosenthal-Aizman K, Svensson G, Unden A (2004) Self-assembling peptide nanotubes from enantiomeric pairs of cyclic peptides with alternating D and L amino acid residues. J Am Chem Soc 126:3372-3373
    • (2004) J Am Chem Soc , vol.126 , pp. 3372-3373
    • Rosenthal-Aizman, K.1    Svensson, G.2    Unden, A.3
  • 29
    • 0030973396 scopus 로고    scopus 로고
    • Modulation of reactivity in native chemical ligation through the use of thiol additives
    • Dawson PE, Churchill MJ, Ghadiri MR, Kent SBH (1997) Modulation of reactivity in native chemical ligation through the use of thiol additives. J Am Chem Soc 119:4325-4329
    • (1997) J Am Chem Soc , vol.119 , pp. 4325-4329
    • Dawson, P.E.1    Churchill, M.J.2    Ghadiri, M.R.3    Kent, S.B.H.4
  • 30
    • 0035197730 scopus 로고    scopus 로고
    • Designer hybrid cyclopeptides for membrane ion transport and tubular structures
    • Ranganathan D (2001) Designer hybrid cyclopeptides for membrane ion transport and tubular structures. Acc Chem Res 34:919-930
    • (2001) Acc Chem Res , vol.34 , pp. 919-930
    • Ranganathan, D.1
  • 31
    • 0000687330 scopus 로고    scopus 로고
    • Self-assembling cyclic peptide cylinders as nuclei for crystal engineering
    • Bong DT, Ghadiri MR (2001) Self-assembling cyclic peptide cylinders as nuclei for crystal engineering. Angew Chem Int Edit 40:2163-2166
    • (2001) Angew Chem Int Edit , vol.40 , pp. 2163-2166
    • Bong, D.T.1    Ghadiri, M.R.2
  • 33
    • 9644268752 scopus 로고    scopus 로고
    • Heterocyclic peptide backbone modifications in an α-helical coiled coil
    • Horne WS, Yadav MK, Stout CD, Ghadiri MR (2004) Heterocyclic peptide backbone modifications in an α-helical coiled coil. J Am Chem Soc 126:15366-15367
    • (2004) J Am Chem Soc , vol.126 , pp. 15366-15367
    • Horne, W.S.1    Yadav, M.K.2    Stout, C.D.3    Ghadiri, M.R.4
  • 34
    • 0000750272 scopus 로고
    • Structure and dynamics of self-assembling peptide nanotubes and the channel-mediated water organization and self-diffusion. A molecular dynamics study
    • Engels M, Bashford D, Ghadiri MR (1995) Structure and dynamics of self-assembling peptide nanotubes and the channel-mediated water organization and self-diffusion. a molecular dynamics study. J Am Chem Soc 117:9151-9158
    • (1995) J Am Chem Soc , vol.117 , pp. 9151-9158
    • Engels, M.1    Bashford, D.2    Ghadiri, M.R.3
  • 35
    • 0141754087 scopus 로고    scopus 로고
    • Molecular dynamics investigation of an oriented cyclic peptide nanotube in DMPC bilayers
    • Tarek M, Maigret B, Chipot C (2003) Molecular dynamics investigation of an oriented cyclic peptide nanotube in DMPC bilayers. Biophys J 85:2287-2298
    • (2003) Biophys J , vol.85 , pp. 2287-2298
    • Tarek, M.1    Maigret, B.2    Chipot, C.3
  • 37
    • 0029167845 scopus 로고
    • Beta-sheet peptide architecture: Measuring the relative stability of parallel vs. antiparallel beta-Sheets
    • Kobayashi K, Granja JR, Ghadiri MR (1995) Beta-sheet peptide architecture: Measuring the relative stability of parallel vs. antiparallel beta-Sheets. Angew Chem Int Ed 34:95-98
    • (1995) Angew Chem Int Ed , vol.34 , pp. 95-98
    • Kobayashi, K.1    Granja, J.R.2    Ghadiri, M.R.3
  • 38
    • 0029106370 scopus 로고
    • The structural and thermodynamic basis for the formation of self-assembled peptide nanotubes
    • Ghadiri MR, Kobayashi K, Granja JR, Chadha RK, McRee DE (1995) The structural and thermodynamic basis for the formation of self-assembled peptide nanotubes. Angew Chem Int Ed 34:93-95
    • (1995) Angew Chem Int Ed , vol.34 , pp. 93-95
    • Ghadiri, M.R.1    Kobayashi, K.2    Granja, J.R.3    Chadha, R.K.4    McRee, D.E.5
  • 39
    • 0029230553 scopus 로고
    • Ab initio calculations and force field development for computer simulation of polysilanes
    • Sun H (1995) Ab initio calculations and force field development for computer simulation of polysilanes. Macromolecules 28:701-712
    • (1995) Macromolecules , vol.28 , pp. 701-712
    • Sun, H.1
  • 40
    • 0001189010 scopus 로고    scopus 로고
    • COMPASS: An ab initio force-field optimized for condensed-phase applications - Overview with details on alkane and benzene compounds
    • Sun H (1998) COMPASS: An ab initio force-field optimized for condensed-phase applications - overview with details on alkane and benzene compounds. J Phys Chem B 102:7338-7364
    • (1998) J Phys Chem B , vol.102 , pp. 7338-7364
    • Sun, H.1
  • 41
    • 0031644033 scopus 로고    scopus 로고
    • The COMPASS force field: Parameterization and validation for polyphosphazenes
    • Sun H, Ren P, Fried JR (1998) The COMPASS force field: Parameterization and validation for polyphosphazenes. Comput Theor Polym Sci 8:229-246
    • (1998) Comput Theor Polym Sci , vol.8 , pp. 229-246
    • Sun, H.1    Ren, P.2    Fried, J.R.3
  • 42
    • 0023008334 scopus 로고
    • Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins
    • Krimm S, Bandekar J (1986) Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins. Adv Protein Chem 38:181-364
    • (1986) Adv Protein Chem , vol.38 , pp. 181-364
    • Krimm, S.1    Bandekar, J.2
  • 44
    • 84987340520 scopus 로고
    • On the stacking of β-rings: The solution self-association behavior of two partially N-methylated cyclo(hexaleucines)
    • Sun X, Lorenzi GP (1994) On the stacking of β-rings: The solution self-association behavior of two partially N-methylated cyclo(hexaleucines). Helv Chim Acta 77:1520-1526
    • (1994) Helv Chim Acta , vol.77 , pp. 1520-1526
    • Sun, X.1    Lorenzi, G.P.2
  • 45
    • 0026507761 scopus 로고
    • Amide modes and protein conformation
    • Bandekar J (1992) Amide modes and protein conformation. Biochim Biophys Acta 1120:123-143
    • (1992) Biochim Biophys Acta , vol.1120 , pp. 123-143
    • Bandekar, J.1
  • 46
    • 34249772457 scopus 로고
    • A structural two-ring version of a tubular stack of β -rings in crystals of a cyclic D,L-hexapeptide
    • Saviano M, Lombardi A, Pedone C, Blasio BD, Sun XC, Lorenzi GP (1994) A structural two-ring version of a tubular stack of β -rings in crystals of a cyclic D,L-hexapeptide. J Incl Phenom 18:27-36
    • (1994) J Incl Phenom , vol.18 , pp. 27-36
    • Saviano, M.1    Lombardi, A.2    Pedone, C.3    Blasio, B.D.4    Sun, X.C.5    Lorenzi, G.P.6
  • 47
    • 0027954789 scopus 로고
    • Channel-mediated transport of glucose across lipid bilayers
    • Granja JR, Ghadiri MR (1994) Channel-mediated transport of glucose across lipid bilayers. J Am Chem Soc 116:10785-10786
    • (1994) J Am Chem Soc , vol.116 , pp. 10785-10786
    • Granja, J.R.1    Ghadiri, M.R.2
  • 48
    • 0028459606 scopus 로고
    • Nanoscale tubular ensembles with specified internal diameters. Design of a self-assembled nanotube with a 13 angstrom. Pore
    • Khazanovich N, Granja JR, McRee DE, Milligan RA, Ghadiri MR (1994) Nanoscale tubular ensembles with specified internal diameters. Design of a self-assembled nanotube with a 13 angstrom. pore. J Am Chem Soc 116:6011-6012
    • (1994) J Am Chem Soc , vol.116 , pp. 6011-6012
    • Khazanovich, N.1    Granja, J.R.2    McRee, D.E.3    Milligan, R.A.4    Ghadiri, M.R.5
  • 49
    • 15544363600 scopus 로고    scopus 로고
    • Molecular dynamics simulations on the effects of diameter and chirality on hydrogen adsorption in single walled carbon nanotubes
    • Cheng HS, Cooper AC, Pez GP, Kostov MK, Piotrowski P, Stuart SJA (2005) Molecular dynamics simulations on the effects of diameter and chirality on hydrogen adsorption in single walled carbon nanotubes. J Phys Chem B 109:3780-3786
    • (2005) J Phys Chem B , vol.109 , pp. 3780-3786
    • Cheng, H.S.1    Cooper, A.C.2    Pez, G.P.3    Kostov, M.K.4    Piotrowski, P.5    Stuart, S.J.A.6
  • 50
    • 33748747035 scopus 로고    scopus 로고
    • Diffusion of single alkane molecule in carbon nanotube studied by molecular dynamics simulation
    • Yang H, Liu Y, Zhang H, Li ZS (2006) Diffusion of single alkane molecule in carbon nanotube studied by molecular dynamics simulation. Polymer 47:7607-7610
    • (2006) Polymer , vol.47 , pp. 7607-7610
    • Yang, H.1    Liu, Y.2    Zhang, H.3    Li, Z.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.