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Volumn 66, Issue 4, 2008, Pages 210-222

Power of genetic association studies in the presence of linkage disequilibrium and allelic heterogeneity

Author keywords

Allelic association; Allelic heterogeneity; Case control study; Heterogeneity; Linkage disequilibrium; Mutations; Sample size; Transmission disequilibrium test

Indexed keywords

CASPASE RECRUITMENT DOMAIN PROTEIN 15;

EID: 53249129077     PISSN: 00015652     EISSN: None     Source Type: Journal    
DOI: 10.1159/000143404     Document Type: Article
Times cited : (8)

References (31)
  • 1
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch N, Merikangas K: The future of genetic studies of complex human diseases. Science 1996;273:1516-1517.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 2
    • 0031459373 scopus 로고    scopus 로고
    • Genomewide transmission/disequilibrium testing - consideration of the genotypic relative risks at disease loci
    • Camp NJ: Genomewide transmission/disequilibrium testing - consideration of the genotypic relative risks at disease loci. Am J Hum Genet 1997;61:1424-1430.
    • (1997) Am J Hum Genet , vol.61 , pp. 1424-1430
    • Camp, N.J.1
  • 3
    • 0033362161 scopus 로고    scopus 로고
    • Genomewide transmission/disequilibrium testing: A correction
    • Camp NJ: Genomewide transmission/disequilibrium testing: A correction. Am J Hum Genet 1999;64:1485-1487.
    • (1999) Am J Hum Genet , vol.64 , pp. 1485-1487
    • Camp, N.J.1
  • 4
    • 0033358557 scopus 로고    scopus 로고
    • A note on power approximations for the transmission/ disequilibrium test
    • Knapp M: A note on power approximations for the transmission/ disequilibrium test. Am J Hum Genet 1999;64:1177-1185.
    • (1999) Am J Hum Genet , vol.64 , pp. 1177-1185
    • Knapp, M.1
  • 5
    • 0032231325 scopus 로고    scopus 로고
    • Maximum-likelihood expression of the transmission/disequilibrium test and power considerations
    • Abel L, Muller-Myhsok B: Maximum-likelihood expression of the transmission/disequilibrium test and power considerations. Am J Hum Genet 1998;63:664-667.
    • (1998) Am J Hum Genet , vol.63 , pp. 664-667
    • Abel, L.1    Muller-Myhsok, B.2
  • 6
    • 0033073397 scopus 로고    scopus 로고
    • Power of association and linkage tests when the disease alleles are unobserved
    • Tu IP, Whittemore AS: Power of association and linkage tests when the disease alleles are unobserved. Am J Hum Genet 1999;64:641-649.
    • (1999) Am J Hum Genet , vol.64 , pp. 641-649
    • Tu, I.P.1    Whittemore, A.S.2
  • 12
    • 0036369957 scopus 로고    scopus 로고
    • Effect of mode of inheritance when calculating the power of a transmission disequilibrium test study
    • Iles MM: Effect of mode of inheritance when calculating the power of a transmission disequilibrium test study. Hum Hered 2002;53:153-157.
    • (2002) Hum Hered , vol.53 , pp. 153-157
    • Iles, M.M.1
  • 13
    • 0031793251 scopus 로고    scopus 로고
    • The power of linkage detection by the transmission disequilibrium tests
    • Xiong M, Guo S-W: The power of linkage detection by the transmission disequilibrium tests. Hum Hered 1998;48:295-312.
    • (1998) Hum Hered , vol.48 , pp. 295-312
    • Xiong, M.1    Guo, S.-W.2
  • 16
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: Analysis and visualization of LD and haplotype maps
    • Barrett JC, Fry B, Maller J, Daly MJ: Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics 2005;21:263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 17
    • 0032969649 scopus 로고    scopus 로고
    • Likelihoods and TDT for the case-parents design
    • Schaid DJ: Likelihoods and TDT for the case-parents design. Genet Epidemiol 1999;16:250-260.
    • (1999) Genet Epidemiol , vol.16 , pp. 250-260
    • Schaid, D.J.1
  • 18
    • 3242713277 scopus 로고    scopus 로고
    • Begovich AB, Carlton VEH, Honigberg LA, Schrodi SJ, Chokkalingam AP, Alexander HC, Ardlie KG, Huang QQ, Smith AM, Spoerke JM, Conn MT, Chang M, Chang SYP, Saiki RK, Catanese JJ, Leong DU, Garcia VE, McAllister LB, Jeffery DA, Lee AT, Batliwalla F, Remmers E, Criswell LA, Seldin MF, Kastner DL, Amos CI, Sninsky JJ, Gregersen PK: A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis. Am J Hum Genet 2004;75:330-337.
    • Begovich AB, Carlton VEH, Honigberg LA, Schrodi SJ, Chokkalingam AP, Alexander HC, Ardlie KG, Huang QQ, Smith AM, Spoerke JM, Conn MT, Chang M, Chang SYP, Saiki RK, Catanese JJ, Leong DU, Garcia VE, McAllister LB, Jeffery DA, Lee AT, Batliwalla F, Remmers E, Criswell LA, Seldin MF, Kastner DL, Amos CI, Sninsky JJ, Gregersen PK: A missense single-nucleotide polymorphism in a gene encoding a protein tyrosine phosphatase (PTPN22) is associated with rheumatoid arthritis. Am J Hum Genet 2004;75:330-337.
  • 19
    • 12344257537 scopus 로고    scopus 로고
    • Association of R602W in a protein tyrosine phosphatase gene with a high risk of rheumatoid arthritis in a British population: Evidence for an early onset/disease severity effect
    • Steer S, Lad B, Grumley JA, Kingsley GH, Fisher SA: Association of R602W in a protein tyrosine phosphatase gene with a high risk of rheumatoid arthritis in a British population: Evidence for an early onset/disease severity effect. Arthritis Rheum 2005;52:358-360.
    • (2005) Arthritis Rheum , vol.52 , pp. 358-360
    • Steer, S.1    Lad, B.2    Grumley, J.A.3    Kingsley, G.H.4    Fisher, S.A.5
  • 21
    • 33750890657 scopus 로고    scopus 로고
    • A haplotype-based analysis of the PTPN22 locus in type 1 diabetes
    • Onengut-Gumuscu S, Buckner JH, Concannon P: A haplotype-based analysis of the PTPN22 locus in type 1 diabetes. Diabetes 2006;55:2883-2889.
    • (2006) Diabetes , vol.55 , pp. 2883-2889
    • Onengut-Gumuscu, S.1    Buckner, J.H.2    Concannon, P.3
  • 22
    • 0033969453 scopus 로고    scopus 로고
    • Effect of allelic heterogeneity on the power of the transmission disequilibrium test
    • Slager SL, Huang J, Vieland VJ: Effect of allelic heterogeneity on the power of the transmission disequilibrium test. Genet Epidemiol 2000;18:143-156.
    • (2000) Genet Epidemiol , vol.18 , pp. 143-156
    • Slager, S.L.1    Huang, J.2    Vieland, V.J.3
  • 23
    • 0033623360 scopus 로고    scopus 로고
    • General equations for P-t, P-s, and the power of the TDT and the affected-sib-pair test
    • McGinnis R: General equations for P-t, P-s, and the power of the TDT and the affected-sib-pair test. Am J Hum Genet 2000;67:1340-1347.
    • (2000) Am J Hum Genet , vol.67 , pp. 1340-1347
    • McGinnis, R.1
  • 24
    • 0036629747 scopus 로고    scopus 로고
    • On calculating the power of a TDT study - comparison of methods
    • Iles MM: On calculating the power of a TDT study - comparison of methods. Ann Hum Genet 2002;66:323-328.
    • (2002) Ann Hum Genet , vol.66 , pp. 323-328
    • Iles, M.M.1
  • 25
    • 0034929626 scopus 로고    scopus 로고
    • A general and accurate approach for computing the statistical power of the transmission disequilibrium test for complex disease genes
    • Chen WM, Deng HW: A general and accurate approach for computing the statistical power of the transmission disequilibrium test for complex disease genes. Genet Epidemiol 2001;21:53-67.
    • (2001) Genet Epidemiol , vol.21 , pp. 53-67
    • Chen, W.M.1    Deng, H.W.2
  • 26
    • 0035004195 scopus 로고    scopus 로고
    • Complexity and power in case-control association studies
    • Longmate JA: Complexity and power in case-control association studies. Am J Hum Genet 2001;68:1229-1237.
    • (2001) Am J Hum Genet , vol.68 , pp. 1229-1237
    • Longmate, J.A.1
  • 28
    • 33644830588 scopus 로고    scopus 로고
    • Power and sample size for testing associations of haplotypes with complex traits
    • Schaid DJ: Power and sample size for testing associations of haplotypes with complex traits. Ann Hum Genet 2006;70:116-130.
    • (2006) Ann Hum Genet , vol.70 , pp. 116-130
    • Schaid, D.J.1
  • 29
    • 0036792816 scopus 로고    scopus 로고
    • On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles
    • Morris RW, Kaplan NL: On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles. Genet Epidemiol 2002;23:221-233.
    • (2002) Genet Epidemiol , vol.23 , pp. 221-233
    • Morris, R.W.1    Kaplan, N.L.2
  • 30
    • 0028981182 scopus 로고
    • An extended transmission/disequilibrium test (TDT) for multi- allele marker loci
    • Sham PC, Curtis D: An extended transmission/disequilibrium test (TDT) for multi- allele marker loci. Ann Hum Genet 1995;59:323-336.
    • (1995) Ann Hum Genet , vol.59 , pp. 323-336
    • Sham, P.C.1    Curtis, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.