Proteochemometrics analysis of substrate interactions with dengue virus NS3 proteases

Bioorganic and Medicinal Chemistry

Volumn 16, Issue 20, 2008, Pages 9369-9377

  Prusis, Peteris ^a   Lapins, Maris ^a   Yahorava, Sviatlana ^a   Petrovska, Ramona ^a   Niyomrattanakit, Pornwaratt ^b   Katzenmeier, Gerd ^b   Wikberg, Jarl E S ^a  

^a UPPSALA UNIVERSITY   (Sweden)

^b MAHIDOL UNIVERSITY   (Thailand)

Author keywords

Dengue proteases; Library design; Molecular recognition modeling; Peptide library; Proteochemometrics; Statistical molecular design; Substrate library

Indexed keywords

AMINO ACID; PROTEINASE;

ARTICLE; BINDING AFFINITY; CHEMOMETRICS; DENGUE VIRUS; ENZYME ACTIVITY; ENZYME SUBSTRATE; MICHAELIS MENTEN KINETICS; MOLECULAR INTERACTION; MOLECULAR MODEL; MOLECULAR RECOGNITION; NONHUMAN; PROTEOMICS;

COMBINATORIAL CHEMISTRY TECHNIQUES; DENGUE VIRUS; KINETICS; MODELS, BIOLOGICAL; PROTEIN BINDING; PROTEOMICS; SERINE ENDOPEPTIDASES; SUBSTRATE SPECIFICITY;

DENGUE VIRUS;

EID: 53249113059     PISSN: 09680896     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmc.2008.08.081     Document Type: Article

References (46)

1. Halstead S.B. Science 239 (1988) 476
2. Jacobs M.G., and Young P.R. Curr. Opin. Infect. Dis. 11 (1998) 319
3. Monath T.P. Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 2395
4. Gubler D.J., and Clark G.G. Emerg. Infect. Dis. 1 (1995) 55
5. Guzman M.G., and Kouri G. Lancet Infect. Dis. 2 (2002) 33
6. Gubler D.J. Clin. Microbiol. Rev. 11 (1998) 480
7. Gubler D.J. Trends Microbiol. 10 (2002) 100
8. Edelman R. Clin. Infect. Dis. 45 Suppl. 1 (2007) S56
9. Chambers T.J., Hahn C.S., Galler R., and Rice C.M. Annu. Rev. Microbiol. 44 (1990) 649
10. Stadler K., Allison S.L., Schalich J., and Heinz F.X. J. Virol. 71 (1997) 8475
11. Falgout B., Pethel M., Zhang Y.M., and Lai C.J. J. Virol. 65 (1991) 2467
12. Zhang L., Mohan P.M., and Padmanabhan R. J. Virol. 66 (1992) 7549
13. Ramachandran M., Sasaguri Y., Nakano R., and Padmanabhan R. Methods Enzymol. 275 (1996) 168
14. Preugschat F., Yao C.W., and Strauss J.H. J. Virol. 64 (1990) 4364
15. Chambers T.J., Weir R.C., Grakoui A., McCourt D.W., Bazan J.F., Fletterick R.J., and Rice C.M. Proc. Natl. Acad. Sci. U.S.A. 87 (1990) 8898
16. Preugschat F., and Strauss J.H. Virology 185 (1991) 689
17. Arias C.F., Preugschat F., and Strauss J.H. Virology 193 (1993) 888
18. Lin C., Amberg S.M., Chambers T.J., and Rice C.M. J. Virol. 67 (1993) 2327
19. Lobigs M. Proc. Natl. Acad. Sci. U.S.A. 90 (1993) 6218
20. Teo K.F., and Wright P.J. J. Gen. Virol. 78 (1997) 337
21. Li H., Clum S., You S., Ebner K.E., and Padmanabhan R. J. Virol. 73 (1999) 3016
22. Clum S., Ebner K.E., and Padmanabhan R. J. Biol. Chem. 272 (1997) 30715
23. Falgout B., Miller R.H., and Lai C.J. J. Virol. 67 (1993) 2034
24. Chambers T.J., Grakoui A., and Rice C.M. J. Virol. 65 (1991) 6042
25. Wengler G., Czaya G., Farber P.M., and Hegemann J.H. J. Gen. Virol. 72 (1991) 851
26. Li J., Lim S.P., Beer D., Patel V., Wen D., Tumanut C., Tully D.C., Williams J.A., Jiricek J., Priestle J.P., Harris J.L., and Vasudevan S.G. J. Biol. Chem. 280 (2005) 28766
27. Niyomrattanakit P., Yahorava S., Mutule I., Mutulis F., Petrovska R., Prusis P., Katzenmeier G., and Wikberg J. Biochem. J. 397 (2006) 203
28. Yin Z., Patel S.J., Wang W.L., Wang G., Chan W.L., Rao K.R., Alam J., Jeyaraj D.A., Ngew X., Patel V., Beer D., Lim S.P., Vasudevan S.G., and Keller T.H. Bioorg. Med. Chem. Lett. 16 (2006) 36
29. Chanprapaph S., Saparpakorn P., Sangma C., Niyomrattanakit P., Hannongbua S., Angsuthanasombat C., and Katzenmeier G. Biochem. Biophys. Res. Commun. 330 (2005) 1237
30. Lapinsh M., Prusis P., Gutcaits A., Lundstedt T., and Wikberg J.E.S. Biochim. Biophys. Acta 1525 (2001) 180
31. Wikberg J.E.S., Lapinsh M., and Prusis P. Proteochemometrics: A Tool for Modelling the Molecular Interaction Space. In: Kubinyi H., and Müller G. (Eds). Chemogenomics in Drug Discovery-A Medicinal Chemistry Perspective (2004), Wiley-VCH, Weinheim 289-309
32. Lapinsh M., Prusis P., Uhlén S., and Wikberg J.E.S. Bioinformatics 21 (2005) 4289
33. Lapinsh M., Veiksina S., Uhlén S., Petrovska R., Mutule I., Mutulis F., Yahorava S., Prusis P., and Wikberg J.E.S. Mol. Pharmacol. 67 (2005) 50
34. Prusis P., Uhlen S., Petrovska R., Lapinsh M., and Wikberg J.E.S. BMC Bioinformatics 7 (2006) 167
35. Mandrika I., Prusis P., Yahorava S., Shikhagie M., and Wikberg J.E.S. Protein Eng. Des. Sel. 20 (2007) 301
36. Kontijevskis A., Prusis P., Petrovska R., Yahorava S., Mutulis F., Mutule I., Komorowski J., and Wikberg J.E.S. PLoS Comput. Biol. 3 (2007) e48
37. Eriksson L., and Johansson E. Chemom. Intell. Lab. 34 (1996) 1
38. Lundstedt T.E., Seifert E., Abramo L., Thelin B., Nystrom A., Pettersen J., and Bergman R. Chemom. Intell. Lab. 42 (1998) 3
39. De Aguiar P.F., Bourguignon B., Khots M.S., Massart D.L., and Phan-Than-Luu R. Chemom. Intell. Lab. 2 (1995) 199
40. Eriksson L., Johansson E., Kettaneh-Wold N., Wikström N., and Wold S. Design of Experiments, Principles and Applications (2000), Umetrics AB, Umeå
41. Sandberg M., Eriksson L., Jonsson J., Sjöström M., and Wold S. J. Med. Chem. 41 (1998) 2481
42. Wold S., Esbensen K., and Geladi P. Chemom. Intell. Lab. 2 (1987) 37
43. Gottfries J. Chemom. Intell. Lab. 83 (2006) 148
44. Wold S., Sjöström M., and Eriksson L. Chemom. Intell. Lab. 58 (2001) 109
45. Wold S. PLS for Multivariate Linear Modeling. In: van de Waterbeend H. (Ed). Chemometric Methods in Molecular Design (1995), VCH, Weinheim, Germany 195-218
46. Geladi P., and Kowalski B.R. Anal. Chim. Acta 185 (1986) 1