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Volumn 425, Issue 1-2, 2008, Pages 48-55

An old bilbo-like non-LTR retroelement insertion provides insight into the relationship of species of the virilis group

Author keywords

Deletion; Drosophila Americana; Phylogeny; Xc inversion

Indexed keywords

ARTICLE; BILBO GENE; DROSOPHILA AMERICANA; DROSOPHILA LITTORALIS; DROSOPHILA LUMMEI; DROSOPHILA NOVAMEXICANA; DROSOPHILA VIRILIS; GENE; GENE DELETION; GENE INSERTION; MOLECULAR CLOCK; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; XC GENE;

EID: 53149089756     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.08.010     Document Type: Article
Times cited : (10)

References (47)
  • 1
    • 23044509495 scopus 로고    scopus 로고
    • Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila
    • Aminetzach Y.T., Macpherson J.M., and Petrov D.A. Pesticide resistance via transposition-mediated adaptive gene truncation in Drosophila. Science 309 5735 (2005) 764-767
    • (2005) Science , vol.309 , Issue.5735 , pp. 764-767
    • Aminetzach, Y.T.1    Macpherson, J.M.2    Petrov, D.A.3
  • 2
    • 7044269640 scopus 로고    scopus 로고
    • Molecular evidence for Pleistocene glacial cycles driving diversification of a North American desert spider, Agelenopsis aperta
    • Ayoub N.A., and Riechert S.E. Molecular evidence for Pleistocene glacial cycles driving diversification of a North American desert spider, Agelenopsis aperta. Mol. Ecol. 13 11 (2004) 3453-3465
    • (2004) Mol. Ecol. , vol.13 , Issue.11 , pp. 3453-3465
    • Ayoub, N.A.1    Riechert, S.E.2
  • 3
    • 2942689361 scopus 로고    scopus 로고
    • The lack of recombination drives the fixation of transposable elements on the fourth chromosome of Drosophila melanogaster
    • Bartolomé C., and Maside X. The lack of recombination drives the fixation of transposable elements on the fourth chromosome of Drosophila melanogaster. Genet. Res. 83 2 (2004) 91-100
    • (2004) Genet. Res. , vol.83 , Issue.2 , pp. 91-100
    • Bartolomé, C.1    Maside, X.2
  • 4
    • 34547471449 scopus 로고    scopus 로고
    • Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster
    • Bergman C.M., and Bensasson D. Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. Proc. Natl. Acad. Sci. U. S. A. 104 27 (2007) 11340-11345
    • (2007) Proc. Natl. Acad. Sci. U. S. A. , vol.104 , Issue.27 , pp. 11340-11345
    • Bergman, C.M.1    Bensasson, D.2
  • 6
    • 7444262495 scopus 로고    scopus 로고
    • A genealogical view of chromosomal evolution and species delimitation in the Drosophila virilis species subgroup
    • Caletka B.C., and McAllister B.F. A genealogical view of chromosomal evolution and species delimitation in the Drosophila virilis species subgroup. Mol. Phylogenet. Evol. 33 3 (2004) 664-670
    • (2004) Mol. Phylogenet. Evol. , vol.33 , Issue.3 , pp. 664-670
    • Caletka, B.C.1    McAllister, B.F.2
  • 7
    • 3242720690 scopus 로고    scopus 로고
    • World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster
    • Catania F., Kauer M.O., Daborn P.J., Yen J.L., Ffrench-Constant R.H., and Schlotterer C. World-wide survey of an Accord insertion and its association with DDT resistance in Drosophila melanogaster. Mol. Ecol. 13 8 (2004) 2491-2504
    • (2004) Mol. Ecol. , vol.13 , Issue.8 , pp. 2491-2504
    • Catania, F.1    Kauer, M.O.2    Daborn, P.J.3    Yen, J.L.4    Ffrench-Constant, R.H.5    Schlotterer, C.6
  • 8
    • 32044447172 scopus 로고    scopus 로고
    • Identification of transposable elements using multiple alignments of related genomes
    • Caspi A., and Pachter L. Identification of transposable elements using multiple alignments of related genomes. Genome Res. 16 2 (2006) 260-270
    • (2006) Genome Res. , vol.16 , Issue.2 , pp. 260-270
    • Caspi, A.1    Pachter, L.2
  • 9
    • 33750996144 scopus 로고    scopus 로고
    • Phylogeographic structure and historical demography of the western diamondback rattlesnake (Crotalus atrox): a perspective on North American desert biogeography
    • Castoe T.A., Spencer C.L., and Parkinson C.L. Phylogeographic structure and historical demography of the western diamondback rattlesnake (Crotalus atrox): a perspective on North American desert biogeography. Mol. Phylogenet. Evol. 42 1 (2007) 193-212
    • (2007) Mol. Phylogenet. Evol. , vol.42 , Issue.1 , pp. 193-212
    • Castoe, T.A.1    Spencer, C.L.2    Parkinson, C.L.3
  • 10
    • 0021077476 scopus 로고
    • The population dynamics of transposable elements
    • Charlesworth B., and Charlesworth D. The population dynamics of transposable elements. Genet. Res. 42 (1983) 1-27
    • (1983) Genet. Res. , vol.42 , pp. 1-27
    • Charlesworth, B.1    Charlesworth, D.2
  • 11
    • 18344362984 scopus 로고    scopus 로고
    • Onset of Asian desertification by 22 Myr ago inferred from loess deposits in China
    • Guo Z.T., et al. Onset of Asian desertification by 22 Myr ago inferred from loess deposits in China. Nature 416 6877 (2002) 159-163
    • (2002) Nature , vol.416 , Issue.6877 , pp. 159-163
    • Guo, Z.T.1
  • 12
    • 0002836691 scopus 로고
    • Chromosomal variation and evolution in the virilis group of Drosophila
    • Hsu T.C. Chromosomal variation and evolution in the virilis group of Drosophila. Univ. Tex. Publ. 5204 (1952) 35-72
    • (1952) Univ. Tex. Publ. , vol.5204 , pp. 35-72
    • Hsu, T.C.1
  • 13
    • 24944480648 scopus 로고    scopus 로고
    • Modeling the middle Pliocene climate with a global atmospheric general circulation model
    • Jiang D.B., Wang H.J., Ding Z.L., Lang X.M., and Drange H. Modeling the middle Pliocene climate with a global atmospheric general circulation model. J. Geophysical Res. 110 (2005) D14107
    • (2005) J. Geophysical Res. , vol.110
    • Jiang, D.B.1    Wang, H.J.2    Ding, Z.L.3    Lang, X.M.4    Drange, H.5
  • 15
    • 23844495158 scopus 로고    scopus 로고
    • Fixed and unstable I-related transposable elements in heterochromatin of Drosophila melanogaster
    • Junakovic N., Fortunati D., and Soriano S. Fixed and unstable I-related transposable elements in heterochromatin of Drosophila melanogaster. Cytogenet Genome Res. 110 1-4 (2005) 173-180
    • (2005) Cytogenet Genome Res. , vol.110 , Issue.1-4 , pp. 173-180
    • Junakovic, N.1    Fortunati, D.2    Soriano, S.3
  • 16
    • 0009102709 scopus 로고
    • Transposable elements in Mendelian populations. III. Statistical Results
    • Kaplan N.L., and Brookfield J.F. Transposable elements in Mendelian populations. III. Statistical Results. Genetics 104 3 (1983) 485-495
    • (1983) Genetics , vol.104 , Issue.3 , pp. 485-495
    • Kaplan, N.L.1    Brookfield, J.F.2
  • 17
    • 0020966007 scopus 로고
    • Transposable elements in Mendelian populations. I. A theory
    • Langley C.H., Brookfield J.F., and Kaplan N. Transposable elements in Mendelian populations. I. A theory. Genetics 104 3 (1983) 457-471
    • (1983) Genetics , vol.104 , Issue.3 , pp. 457-471
    • Langley, C.H.1    Brookfield, J.F.2    Kaplan, N.3
  • 18
    • 28044446960 scopus 로고    scopus 로고
    • Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome
    • Lipatov M., Lenkov K., Petrov D.A., and Bergman C.M. Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. BMC Biol. 3 (2005) 24
    • (2005) BMC Biol. , vol.3 , pp. 24
    • Lipatov, M.1    Lenkov, K.2    Petrov, D.A.3    Bergman, C.M.4
  • 19
    • 0027450385 scopus 로고
    • Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition
    • Luan D.D., Korman M.H., Jakubczak J.L., and Eickbush T.H. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72 4 (1993) 595-605
    • (1993) Cell , vol.72 , Issue.4 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 20
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • Malik H.S., Burke W.D., and Eickbush T.H. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16 6 (1999) 793-805
    • (1999) Mol. Biol. Evol. , vol.16 , Issue.6 , pp. 793-805
    • Malik, H.S.1    Burke, W.D.2    Eickbush, T.H.3
  • 21
    • 0345040181 scopus 로고    scopus 로고
    • Evidence for an early opening of the Bering Strait
    • Marincovich L., and Gladenkov A.Y. Evidence for an early opening of the Bering Strait. Nature 397 4100 (1999) 149-151
    • (1999) Nature , vol.397 , Issue.4100 , pp. 149-151
    • Marincovich, L.1    Gladenkov, A.Y.2
  • 22
    • 0036792935 scopus 로고    scopus 로고
    • S-element insertions are associated with the evolution of the Hsp70 genes in Drosophila melanogaster
    • Maside X., Bartolomé C., and Charlesworth B. S-element insertions are associated with the evolution of the Hsp70 genes in Drosophila melanogaster. Curr. Biol. 12 19 (2002) 1686-1691
    • (2002) Curr. Biol. , vol.12 , Issue.19 , pp. 1686-1691
    • Maside, X.1    Bartolomé, C.2    Charlesworth, B.3
  • 23
    • 24644517947 scopus 로고    scopus 로고
    • Fixation of transposable elements in the Drosophila melanogaster genome
    • Maside X., Assimacopoulos S., and Charlesworth B. Fixation of transposable elements in the Drosophila melanogaster genome. Genet. Res. 85 3 (2005) 195-203
    • (2005) Genet. Res. , vol.85 , Issue.3 , pp. 195-203
    • Maside, X.1    Assimacopoulos, S.2    Charlesworth, B.3
  • 24
    • 0036008812 scopus 로고    scopus 로고
    • Chromosomal and allelic variation in Drosophila americana: selective maintenance of a chromosomal cline
    • McAllister B.F. Chromosomal and allelic variation in Drosophila americana: selective maintenance of a chromosomal cline. Genome 45 1 (2002) 13-21
    • (2002) Genome , vol.45 , Issue.1 , pp. 13-21
    • McAllister, B.F.1
  • 25
    • 33847034023 scopus 로고    scopus 로고
    • Phylogeographic patterns in Drosophila montana
    • Mirol P.M., et al. Phylogeographic patterns in Drosophila montana. Mol. Ecol. 16 5 (2007) 1085-1097
    • (2007) Mol. Ecol. , vol.16 , Issue.5 , pp. 1085-1097
    • Mirol, P.M.1
  • 26
    • 44849084772 scopus 로고    scopus 로고
    • Inferring the evolutionary history of Drosophila americana and D. novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses
    • Morales-Hojas R., Vieira C.P., and Vieira J. Inferring the evolutionary history of Drosophila americana and D. novamexicana using a multilocus approach and the influence of chromosomal rearrangements in single gene analyses. Mol. Ecol. 17 12 (2008) 2910-2926
    • (2008) Mol. Ecol. , vol.17 , Issue.12 , pp. 2910-2926
    • Morales-Hojas, R.1    Vieira, C.P.2    Vieira, J.3
  • 27
    • 0033288823 scopus 로고    scopus 로고
    • Sure facts, speculations, and open questions about the evolution of transposable element copy number
    • Nuzhdin S.V. Sure facts, speculations, and open questions about the evolution of transposable element copy number. Genetica 107 1-3 (1999) 129-137
    • (1999) Genetica , vol.107 , Issue.1-3 , pp. 129-137
    • Nuzhdin, S.V.1
  • 28
    • 0038247887 scopus 로고    scopus 로고
    • Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila
    • Petrov D.A., Aminetzach Y.T., Davis J.C., Bensasson D., and Hirsh A.E. Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila. Mol. Biol. Evol. 20 6 (2003) 880-892
    • (2003) Mol. Biol. Evol. , vol.20 , Issue.6 , pp. 880-892
    • Petrov, D.A.1    Aminetzach, Y.T.2    Davis, J.C.3    Bensasson, D.4    Hirsh, A.E.5
  • 29
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 9 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 12 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 32
    • 0028910659 scopus 로고
    • Molecular phylogeny and divergence times of drosophilid species
    • Russo C.A., Takezaki N., and Nei M. Molecular phylogeny and divergence times of drosophilid species. Mol. Biol. Evol. 12 3 (1995) 391-404
    • (1995) Mol. Biol. Evol. , vol.12 , Issue.3 , pp. 391-404
    • Russo, C.A.1    Takezaki, N.2    Nei, M.3
  • 33
    • 1242274636 scopus 로고    scopus 로고
    • Strong selective sweep associated with a transposon insertion in Drosophila simulans
    • Schlenke T.A., and Begun D.J. Strong selective sweep associated with a transposon insertion in Drosophila simulans. Proc. Natl. Acad. Sci. U. S. A. 101 6 (2004) 1626-1631
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , Issue.6 , pp. 1626-1631
    • Schlenke, T.A.1    Begun, D.J.2
  • 34
    • 0036243079 scopus 로고    scopus 로고
    • Molecular phylogeny of the Drosophila virilis species group (Diptera: Drosophilidae) inferred from mitochondrial 12S and 16S ribosomal RNA genes
    • Spicer G.S., and Bell C.D. Molecular phylogeny of the Drosophila virilis species group (Diptera: Drosophilidae) inferred from mitochondrial 12S and 16S ribosomal RNA genes. Annals of ESA 95 2 (2002) 156-161
    • (2002) Annals of ESA , vol.95 , Issue.2 , pp. 156-161
    • Spicer, G.S.1    Bell, C.D.2
  • 36
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • Thorne J.L., and Kishino H. Divergence time and evolutionary rate estimation with multilocus data. Syst. Biol. 51 5 (2002) 689-702
    • (2002) Syst. Biol. , vol.51 , Issue.5 , pp. 689-702
    • Thorne, J.L.1    Kishino, H.2
  • 38
    • 1542380973 scopus 로고    scopus 로고
    • The late Miocene and Pliocene climate in East Asia as recorded by grain size and magnetic susceptibility of the Red Clay deposits (Chinese Loess Plateau)
    • Vandenberghe J., Lu H.Y., Sun D.H., van Huissteden J., and Konert M. The late Miocene and Pliocene climate in East Asia as recorded by grain size and magnetic susceptibility of the Red Clay deposits (Chinese Loess Plateau). Palaeo 204 3-4 (2004) 239-255
    • (2004) Palaeo , vol.204 , Issue.3-4 , pp. 239-255
    • Vandenberghe, J.1    Lu, H.Y.2    Sun, D.H.3    van Huissteden, J.4    Konert, M.5
  • 39
    • 0041817599 scopus 로고    scopus 로고
    • Inferences on the evolutionary history of the Drosophila americana polymorphic X/4 fusion from patterns of polymorphism at the X-linked paralytic and elav genes
    • Vieira C.P., Coelho P.A., and Vieira J. Inferences on the evolutionary history of the Drosophila americana polymorphic X/4 fusion from patterns of polymorphism at the X-linked paralytic and elav genes. Genetics 164 4 (2003) 1459-1469
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1459-1469
    • Vieira, C.P.1    Coelho, P.A.2    Vieira, J.3
  • 40
    • 0036215197 scopus 로고    scopus 로고
    • Two divergent species of the virilis group, Drosophila littoralis and Drosophila virilis, share a replacement polymorphism at the fused locus
    • Vieira J. Two divergent species of the virilis group, Drosophila littoralis and Drosophila virilis, share a replacement polymorphism at the fused locus. Mol. Biol. Evol. 19 4 (2002) 579-581
    • (2002) Mol. Biol. Evol. , vol.19 , Issue.4 , pp. 579-581
    • Vieira, J.1
  • 41
    • 0033595547 scopus 로고    scopus 로고
    • X chromosome DNA variation in Drosophila virilis
    • Vieira J., and Charlesworth B. X chromosome DNA variation in Drosophila virilis. Proc. Biol. Sci. 266 1431 (1999) 1905-1912
    • (1999) Proc. Biol. Sci. , vol.266 , Issue.1431 , pp. 1905-1912
    • Vieira, J.1    Charlesworth, B.2
  • 42
    • 0035020912 scopus 로고    scopus 로고
    • Evidence for selection at the fused1 locus of Drosophila americana
    • Vieira J., McAllister B.F., and Charlesworth B. Evidence for selection at the fused1 locus of Drosophila americana. Genetics 158 1 (2001) 279-290
    • (2001) Genetics , vol.158 , Issue.1 , pp. 279-290
    • Vieira, J.1    McAllister, B.F.2    Charlesworth, B.3
  • 43
    • 33745615839 scopus 로고    scopus 로고
    • On the location of the gene(s) harbouring the advantageous variant that maintains the X /4 fusion of Drosophila americana
    • Vieira C.P., Almeida A., Dias J.D., and Vieira J. On the location of the gene(s) harbouring the advantageous variant that maintains the X /4 fusion of Drosophila americana. Genet. Res. 87 3 (2006) 163-174
    • (2006) Genet. Res. , vol.87 , Issue.3 , pp. 163-174
    • Vieira, C.P.1    Almeida, A.2    Dias, J.D.3    Vieira, J.4
  • 44
    • 33745843353 scopus 로고    scopus 로고
    • Molecular phylogeny of the Drosophila virilis section (Diptera: Drosophilidae) based on mitochondrial and nuclear sequences
    • Wang B.C., et al. Molecular phylogeny of the Drosophila virilis section (Diptera: Drosophilidae) based on mitochondrial and nuclear sequences. Mol. Phylogenet. Evol. 40 2 (2006) 484-500
    • (2006) Mol. Phylogenet. Evol. , vol.40 , Issue.2 , pp. 484-500
    • Wang, B.C.1
  • 45
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: software package for data analysis in molecular biology and evolution
    • Xia X., and Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 92 4 (2001) 371-373
    • (2001) J. Hered. , vol.92 , Issue.4 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 46
    • 0035799685 scopus 로고    scopus 로고
    • Evolution of Asian monsoons and phased uplift of the Himalayan Tibetan plateau since Late Miocene times
    • Zhisheng A., Kutzbach J.E., Prell W.L., and Porter S.C. Evolution of Asian monsoons and phased uplift of the Himalayan Tibetan plateau since Late Miocene times. Nature 411 6833 (2001) 62-66
    • (2001) Nature , vol.411 , Issue.6833 , pp. 62-66
    • Zhisheng, A.1    Kutzbach, J.E.2    Prell, W.L.3    Porter, S.C.4
  • 47
    • 0030683599 scopus 로고    scopus 로고
    • PAML a program package for phylogenetic analysis by maximum likelihood
    • Yang Z. PAML a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13 5 (1997) 555-556
    • (1997) Comput. Appl. Biosci. , vol.13 , Issue.5 , pp. 555-556
    • Yang, Z.1


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