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Volumn 1784, Issue 9, 2008, Pages 1222-1225

Functional guanine-arginine interaction between tRNAPro and prolyl-tRNA synthetase that couples binding and catalysis

Author keywords

8 oxo guanosine; Aminoacyl tRNA synthetases; Coupling network; Oxidative cross linking; Prolyl tRNA synthetase; RNA protein interactions

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; ARGININE; GUANINE; HYDROGEN; TRANSFER RNA; BACTERIAL RNA; CROSS LINKING REAGENT; ESCHERICHIA COLI PROTEIN; PROLINE TRANSFER RNA; PROLYL T RNA SYNTHETASE; RECOMBINANT PROTEIN;

EID: 53149085918     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2008.04.027     Document Type: Article
Times cited : (6)

References (23)
  • 1
    • 3643114575 scopus 로고    scopus 로고
    • Universal rules and idiosyncratic features in tRNA identity
    • R. Giegé, M. Sissler, C. Florentz, Universal rules and idiosyncratic features in tRNA identity, Nucleic Acids Res. 26 (1998) 5017-5035.
    • (1998) Nucleic Acids Res , vol.26 , pp. 5017-5035
    • Giegé, R.1    Sissler, M.2    Florentz, C.3
  • 2
    • 35648944297 scopus 로고    scopus 로고
    • A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis
    • A. Ghosh, S. Vishveshwara, A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis, Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 15711-15716.
    • (2007) Proc. Natl. Acad. Sci. U. S. A , vol.104 , pp. 15711-15716
    • Ghosh, A.1    Vishveshwara, S.2
  • 4
    • 34447505073 scopus 로고    scopus 로고
    • Using molecular dynamics to map interaction networks in an aminoacyl-tRNA synthetase
    • M.E. Budiman, M.H. Knaggs, J.S. Fetrow, R.W. Alexander, Using molecular dynamics to map interaction networks in an aminoacyl-tRNA synthetase, Proteins 68 (2007) 670-689.
    • (2007) Proteins , vol.68 , pp. 670-689
    • Budiman, M.E.1    Knaggs, M.H.2    Fetrow, J.S.3    Alexander, R.W.4
  • 5
    • 34548690780 scopus 로고    scopus 로고
    • Indirect readout of tRNA for aminoacylation
    • J.J. Perona, Y.M. Hou, Indirect readout of tRNA for aminoacylation, Biochemistry 46 (2007) 10419-10432.
    • (2007) Biochemistry , vol.46 , pp. 10419-10432
    • Perona, J.J.1    Hou, Y.M.2
  • 6
    • 0028902065 scopus 로고
    • Analysis of the role of the KMSKS loop in the catalytic mechanism of the tyrosyl-tRNA synthetase using multimutant cycles
    • E.A. First, A.R. Fersht, Analysis of the role of the KMSKS loop in the catalytic mechanism of the tyrosyl-tRNA synthetase using multimutant cycles, Biochemistry 34 (1995) 5030-5043.
    • (1995) Biochemistry , vol.34 , pp. 5030-5043
    • First, E.A.1    Fersht, A.R.2
  • 7
    • 0028227221 scopus 로고
    • Distinctive acceptor-end structure and other determinants of Escherichia coli tRNA(Pro) identity
    • W.H. McClain, J. Schneider, K. Gabriel, Distinctive acceptor-end structure and other determinants of Escherichia coli tRNA(Pro) identity, Nucleic Acids Res. 22 (1994) 522-529.
    • (1994) Nucleic Acids Res , vol.22 , pp. 522-529
    • McClain, W.H.1    Schneider, J.2    Gabriel, K.3
  • 8
    • 0028985111 scopus 로고
    • Molecular recognition of tRNA(Pro) by Escherichia coli proline tRNA synthetase in vitro
    • H. Liu, R. Peterson, J. Kessler, K. Musier-Forsyth, Molecular recognition of tRNA(Pro) by Escherichia coli proline tRNA synthetase in vitro, Nucleic Acids Res. 23 (1995) 165-169.
    • (1995) Nucleic Acids Res , vol.23 , pp. 165-169
    • Liu, H.1    Peterson, R.2    Kessler, J.3    Musier-Forsyth, K.4
  • 9
    • 0034282792 scopus 로고    scopus 로고
    • Crystal structure of a eukaryote/archaeon-like protyl-tRNA synthetase and its complex with tRNAPro(CGG)
    • A. Yaremchuk, S. Cusack, M. Tukalo, Crystal structure of a eukaryote/archaeon-like protyl-tRNA synthetase and its complex with tRNAPro(CGG), EMBO J. 19 (2000) 4745-4758.
    • (2000) EMBO J , vol.19 , pp. 4745-4758
    • Yaremchuk, A.1    Cusack, S.2    Tukalo, M.3
  • 10
    • 0034687763 scopus 로고    scopus 로고
    • Evolutionary coadaptation of the motif 2-acceptor stem interaction in the class II prolyl-tRNA synthetase system
    • B. Burke, F. Yang, F. Chen, C. Stehlin, B. Chan, K. Musier-Forsyth, Evolutionary coadaptation of the motif 2-acceptor stem interaction in the class II prolyl-tRNA synthetase system, Biochemistry 39 (2000) 15540-15547.
    • (2000) Biochemistry , vol.39 , pp. 15540-15547
    • Burke, B.1    Yang, F.2    Chen, F.3    Stehlin, C.4    Chan, B.5    Musier-Forsyth, K.6
  • 11
    • 13444288185 scopus 로고    scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • M. Sprinzl, K.S. Vassilenko, Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Res. 33 (2005) D139-D140.
    • (2005) Nucleic Acids Res , vol.33
    • Sprinzl, M.1    Vassilenko, K.S.2
  • 13
    • 17244366814 scopus 로고    scopus 로고
    • Oxidatively induced DNA-protein cross-linking between single-stranded binding protein and oligodeoxynucleotides containing 8-oxo-7,8-dihydro-2′-deoxyguanosine
    • M.E. Johansen, J.G. Muller, X. Xu, C.J. Burrows, Oxidatively induced DNA-protein cross-linking between single-stranded binding protein and oligodeoxynucleotides containing 8-oxo-7,8-dihydro-2′-deoxyguanosine, Biochemistry 44 (2005) 5660-5671.
    • (2005) Biochemistry , vol.44 , pp. 5660-5671
    • Johansen, M.E.1    Muller, J.G.2    Xu, X.3    Burrows, C.J.4
  • 14
    • 0032077545 scopus 로고    scopus 로고
    • Gel electrophoretic detection of 7,8-dihydro-8-oxoguanine and 7, 8-dihydro-8-oxoadenine via oxidation by Ir (IV)
    • J.G. Muller, V. Duarte, R.P. Hickerson, C.J. Burrows, Gel electrophoretic detection of 7,8-dihydro-8-oxoguanine and 7, 8-dihydro-8-oxoadenine via oxidation by Ir (IV), Nucleic Acids Res. 26 (1998) 2247-2249.
    • (1998) Nucleic Acids Res , vol.26 , pp. 2247-2249
    • Muller, J.G.1    Duarte, V.2    Hickerson, R.P.3    Burrows, C.J.4
  • 15
    • 0030249424 scopus 로고    scopus 로고
    • Synthesis and aminoacyl-tRNA synthetase inhibitory activity of prolyl adenylate analogs
    • D. Heacock, C.J. Forsyth, K. Shiba, K. Musier-Forsyth, Synthesis and aminoacyl-tRNA synthetase inhibitory activity of prolyl adenylate analogs, Bioorganic Chemistry 24 (1996) 273-289.
    • (1996) Bioorganic Chemistry , vol.24 , pp. 273-289
    • Heacock, D.1    Forsyth, C.J.2    Shiba, K.3    Musier-Forsyth, K.4
  • 16
    • 0002447044 scopus 로고
    • M.J. McPherson Ed, IRL press, New York
    • R.M. Horton, L.R. Pease, Directed mutagenesis, in: M.J. McPherson (Ed.), IRL press, New York, 1991, pp. 217-247.
    • (1991) Directed mutagenesis , pp. 217-247
    • Horton, R.M.1    Pease, L.R.2
  • 17
    • 0016437581 scopus 로고
    • Active site titration and aminoacyl adenylate binding stoichiometry of aminoacyl-tRNA synthetases
    • A.R. Fersht, J.S. Ashford, C.J. Bruton, R. Jakes, G.L. Koch, B.S. Hartley, Active site titration and aminoacyl adenylate binding stoichiometry of aminoacyl-tRNA synthetases, Biochemistry 14 (1975) 1-4.
    • (1975) Biochemistry , vol.14 , pp. 1-4
    • Fersht, A.R.1    Ashford, J.S.2    Bruton, C.J.3    Jakes, R.4    Koch, G.L.5    Hartley, B.S.6
  • 18
    • 0029312520 scopus 로고
    • Transfer RNA aminoacylation: Identification of a critical ribose 2′-hydroxyl-base interaction
    • L.P. Yap, K. Musier-Forsyth, Transfer RNA aminoacylation: identification of a critical ribose 2′-hydroxyl-base interaction, RNA 1 (1995) 418-424.
    • (1995) RNA , vol.1 , pp. 418-424
    • Yap, L.P.1    Musier-Forsyth, K.2
  • 19
    • 0030929830 scopus 로고    scopus 로고
    • Chemical modification and site-directed mutagenesis of the single cysteine in motif 3 of class II Escherichia coli prolyl-tRNA synthetase
    • C. Stehlin, D.H. Heacock, H. Liu, K. Musier-Forsyth, Chemical modification and site-directed mutagenesis of the single cysteine in motif 3 of class II Escherichia coli prolyl-tRNA synthetase, Biochemistry 36 (1997) 2932-2938.
    • (1997) Biochemistry , vol.36 , pp. 2932-2938
    • Stehlin, C.1    Heacock, D.H.2    Liu, H.3    Musier-Forsyth, K.4
  • 21
    • 0035875882 scopus 로고    scopus 로고
    • A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: Comparison with histidyl-tRNA synthetase
    • A. Yaremchuk, M. Tukalo, M. Grotli, S. Cusack, A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: comparison with histidyl-tRNA synthetase, J. Mol. Biol. 309 (2001) 989-1002.
    • (2001) J. Mol. Biol , vol.309 , pp. 989-1002
    • Yaremchuk, A.1    Tukalo, M.2    Grotli, M.3    Cusack, S.4
  • 22
    • 33847023388 scopus 로고    scopus 로고
    • Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase
    • E.C. Guth, C.S. Francklyn, Kinetic discrimination of tRNA identity by the conserved motif 2 loop of a class II aminoacyl-tRNA synthetase, Mol. Cell 25 (2007) 531-542.
    • (2007) Mol. Cell , vol.25 , pp. 531-542
    • Guth, E.C.1    Francklyn, C.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.