Structure and dynamic of the nucleosome core particle;Structure et dynamique de la particule coeur de nucléosome

Medecine/Sciences

Volumn 24, Issue 8-9, 2008, Pages 715-719

  Bertin, Aurélie ^a   Mangenot, Stéphanie ^b,c  

^a University of California Berkeley   (United States)

^b UNIVERSITÉ PARIS SACLAY   (France)

^c INSTITUT CURIE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE;

CARBOXY TERMINAL SEQUENCE; CELL STRUCTURE; CHROMATIN; CRYSTALLOGRAPHY; EUKARYOTE; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOSOME; REVIEW;

EUKARYOTA;

EID: 53049102356     PISSN: 07670974     EISSN: None     Source Type: Journal    
DOI: 10.1051/medsci/20082489715     Document Type: Review

References (30)

1. Lomberk G, Wallrath L, Urrutia R. The heterochromatin protein 1 family. Genome Biol 2006 ; 7 : 228.
2. Peterson C. The SMC family: novel motor proteins for chromosome condensation? Cell 1994 ; 79 : 389-92.
3. DeLange RJ, Fambrough DM, Smith EL, Bonner J. Calf and Pea Histone IV. II. The complete amino acid sequence of calf thymus histone IV. Presence of egr-N-acetyllysine. J Biol Chem 1969 ; 244 : 319-34.
4. Paedon JF, Wilkins MHF. A super-coil model for nucleohistone. J Mol Biol 1972 ; 68 : 115-24.
5. Hewish DR, Burgoyne LA. Chromatin sub-structure. The digestion of chromatin DNA at regularly spaced sites by a nuclear deoxyribonuclease. Bioch Bioph Res Com 1973 ; 52 : 504-10.
6. Kornberg R, Thoma J. Chromatin structure: oligomers of the histones. Science 1974 ; 184 : 865-8.
7. Olins A, Olins D. Spheroid chromatin units (v bodies). Science 1974 ; 183 : 330-2.
8. Richmond TJ, Finch JT, Rushton B, et al. Structure of the nucleosome core particle at 7 Å resolution. Nature 1984 ; 311 : 532-7.
9. Luger K, Mader AW, Richmond RK, et al. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 1997 ; 389 : 251-60.
10. Arents G, Burlingame RW, Wang B, et al. The nucleosomal core histone octamer at 3.1 Å resolution: a tripartite protein assembly and a left-handed superhelix. Proc Natl Acad Sci USA 1991 ; 88 : 10148-52.
11. Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ. Solvent mediated interactions in the structure of the nucleosome core particle at 1,9 Å resolution. J Mol Biol 2002 ; 319 : 1097-113.
12. Harp JM, Hanson BL, Timm DE, Bunick GJ. Asymmetries in the nucleosome core particle at 2.5 Å resolution. Acta Cryst Section D 2000 ; 56 : 1513-34.
13. White C, Suto R, Luger K. Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions. EMBO J 2001 ; 20 : 5207-18.
14. Suto RK, Clarkson MJ, Tremethick DJ, Luger K. Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nat Struct Mol Biol 2000 ; 7 : 1121-4.
15. Tsunaka Y, Kajimura N, Tate S, Morikawa K. Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particle. Nucleic Acids Res 2005 ; 33 : 3424-34.
16. Guillemette B, Gaudreau L. H2A.Z : un variant d'histone qui orne les promoteurs des gènes. Med Sci (Paris) 2006 ; 22 : 941-6.
17. Strahl BD, Allis CD. The language of covalent histone modifications. Nature 2000 ; 403 : 41-5.
18. Lacoste N, Côté J. Le code épigénétique des histones. Med Sci (Paris) 2003 ; 19 : 955-9.
19. Miotto B, Struhl K. De la régulation du génome à la progression tumorale : acétylation de la lysine 16 de l'histone H4. Med Sci (Paris) 2007 ; 23 : 735-40.
20. Cheung P, Lau P. Epigenetic regulation by histone methylation and histone variants. Mol Endocrinol 2005 ; 19 : 563-73.
21. Lan F, Nottke AC, Shi Y. Mechanisms involved in the regulation of histone lysine demethylases. Curr Op Cell Biol 2008 ; 20 : 316-25.
22. Annunziato AT, Eason MB, Perry CA. Relationship between methylation and acetylation of arginine-rich histones in cycling and arrested HeLa cells. Biochemistry 1995 ; 34 : 2916-24.
23. Luger K. Dynamic nucleosomes. Chrom Res 2006 ; 14 : 5-16.
24. Li G, Levitus M, Bustamante C, Widom J. Rapid spontaneous accessibility of nucleosomal DNA. Nat Struct Mol Biol 2004 ; 12 : 46-53.
25. Becker PB, Horz W. ATP-dependent nucleosome remodeling. Ann Rev Biochem 2002 ; 71 : 247-73.
26. Langst G, Becker PB. ISWI induces nucleosome sliding on nicked DNA. Mol Cell 2001 ; 8 : 1085-92.
27. Peterson C, Tamkun J. The SWI/SNF complex: a chromatin remodeling machine ? Trends Biol Sci 1995 ; 20 : 143-6.
28. Gavin I, Horn P, Peterson C. SWI/SNF chromatin remodeling requires changes in DNA topology. Mol Cell 2001 ; 7 : 97-104.
29. Clapier C, Längst G, Corona D, et al. Critical role for the histone H4 N terminus in nucleosome remodeling by ISWI. Mol Cell Biol 2001 ; 21 : 875-83.
30. Hamiche A, Kang JG, Dennis C, et al. Histone tails modulate nucleosome mobility and regulate ATP-dependent nucleosome sliding by NURF. Proc Natl Acad Sci USA 2001 ; 98 : 14316-21.