-
1
-
-
29144504177
-
At least 1 in 20, 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
-
Ashelford, K.E., Chuzhanova, N.A., Fry, J.C., Jones, A.J. Weightman, A.J. (2005) At least 1 in 20, 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71 : 7724 7736.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
2
-
-
39649093260
-
Microbial nitrification in Mediterranean sponges: Possible involvement of ammonium-oxidizing Betaproteobacteria
-
In. Custódio, M.R., Hajdu, E., Lôbo-Hajdu, G. Muricy, G. (eds). Rio de Janeiro, Brazil: Museu Nacional, pp.
-
Bayer, K., Schmitt, S. Hentschel, U. (2007) Microbial nitrification in Mediterranean sponges: possible involvement of ammonium-oxidizing Betaproteobacteria. In Proceedings of the 7th International Sponge Symposium. Custódio, M.R., Hajdu, E., Lôbo-Hajdu, G. Muricy, G. (eds). Rio de Janeiro, Brazil : Museu Nacional, pp. 165 171.
-
(2007)
Proceedings of the 7th International Sponge Symposium.
, pp. 165-171
-
-
Bayer, K.1
Schmitt, S.2
Hentschel, U.3
-
3
-
-
34548492476
-
Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals
-
Beman, J.M., Roberts, K.J., Wegley, L., Rohwer, F. Francis, C.A. (2007) Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals. Appl Environ Microbiol 73 : 5642 5647.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5642-5647
-
-
Beman, J.M.1
Roberts, K.J.2
Wegley, L.3
Rohwer, F.4
Francis, C.A.5
-
4
-
-
34248562001
-
Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient
-
Bernhard, A.E., Tucker, J., Giblin, A.E. Stahl, D.A. (2007) Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ Microbiol 9 : 1439 1447.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1439-1447
-
-
Bernhard, A.E.1
Tucker, J.2
Giblin, A.E.3
Stahl, D.A.4
-
5
-
-
0027140741
-
Rates of nitrification along an estuarine gradient in Narragansett Bay
-
Berounsky, V.M. Nixon, S.W. (1993) Rates of nitrification along an estuarine gradient in Narragansett Bay. Estuaries 16 : 718 730.
-
(1993)
Estuaries
, vol.16
, pp. 718-730
-
-
Berounsky, V.M.1
Nixon, S.W.2
-
6
-
-
0002313791
-
Phylum Porifera: The sponges
-
In. Sinauer, A.D. (ed.). Sunderland, MA, USA: Sinauer Press, pp.
-
Brusca, R.C. Brusca, G.J. (1990) Phylum Porifera: the sponges. In The Invertebrates. Sinauer, A.D. (ed.). Sunderland, MA, USA : Sinauer Press, pp. 181 210.
-
(1990)
The Invertebrates.
, pp. 181-210
-
-
Brusca, R.C.1
Brusca, G.J.2
-
7
-
-
0037455774
-
Biogeochemical processes in a small California estuary, Elkhorn Slough, CA. 2. Nitrification activity, community structure and role in nitrogen budgets
-
Caffrey, J.M., Harrington, N.E., Solem, I. Ward, B.B. (2003) Biogeochemical processes in a small California estuary, Elkhorn Slough, CA. 2. Nitrification activity, community structure and role in nitrogen budgets. Mar Ecol Prog Ser 248 : 27 40.
-
(2003)
Mar Ecol Prog Ser
, vol.248
, pp. 27-40
-
-
Caffrey, J.M.1
Harrington, N.E.2
Solem, I.3
Ward, B.B.4
-
8
-
-
0002332212
-
The marine microbial nitrogen cycle
-
In. Kirchman, D.L. (ed.). New York, NY, USA: Wiley-Liss, pp.
-
Capone, D.G. (2000) The marine microbial nitrogen cycle. In Microbial Ecology of the Oceans. Kirchman, D.L. (ed.). New York, NY, USA : Wiley-Liss, pp. 455 494.
-
(2000)
Microbial Ecology of the Oceans.
, pp. 455-494
-
-
Capone, D.G.1
-
9
-
-
33947110858
-
Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: A basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids
-
Coolen, M.J.L., Abbas, B., van Bleijswijk, J., Hopmans, E.C., Kuypers, M.M.M., Wakeham, S.G. Sinninghe Damsté, J.S. (2007) Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ Microbiol 9 : 1001 1016.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1001-1016
-
-
Coolen, M.J.L.1
Abbas, B.2
Van Bleijswijk, J.3
Hopmans, E.C.4
Kuypers, M.M.M.5
Wakeham, S.G.6
Sinninghe Damsté, J.S.7
-
10
-
-
0002433777
-
Studies on nitrogen diagenesis in coral reef sands
-
In. Garies, C. (ed.). Moorea, France: Antenne Museum-EPHE, pp.
-
Corredor, J.E. Capone, D.G. (1985) Studies on nitrogen diagenesis in coral reef sands. In Proceedings of the 5th International Coral Reef Congress 3. Garies, C. (ed.). Moorea, France : Antenne Museum-EPHE, pp. 395 399.
-
(1985)
Proceedings of the 5th International Coral Reef Congress 3.
, pp. 395-399
-
-
Corredor, J.E.1
Capone, D.G.2
-
11
-
-
0024228464
-
Nitrate release by Caribbean reef sponges
-
Corredor, J.E., Wilkinson, C.R., Vicente, V.P., Morell, J.M. Otero, E. (1988) Nitrate release by Caribbean reef sponges. Limnol Oceanogr 33 : 114 120.
-
(1988)
Limnol Oceanogr
, vol.33
, pp. 114-120
-
-
Corredor, J.E.1
Wilkinson, C.R.2
Vicente, V.P.3
Morell, J.M.4
Otero, E.5
-
12
-
-
0026755238
-
Archaea in costal marine environments
-
DeLong, E.F. (1992) Archaea in costal marine environments. Proc Natl Acad Sci USA 89 : 5685 5689.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
Delong, E.F.1
-
13
-
-
0030981765
-
Sponge-mediated nitrification in tropical benthic communities
-
Diaz, C.M. Ward, B.B. (1997) Sponge-mediated nitrification in tropical benthic communities. Mar Ecol Prog Ser 156 : 97 107.
-
(1997)
Mar Ecol Prog Ser
, vol.156
, pp. 97-107
-
-
Diaz, C.M.1
Ward, B.B.2
-
14
-
-
33644938477
-
Denaturing gradient gel electrophoresis of nitrifying microbes associated with tropical sponges
-
Diaz, C.M., Akob, D. Cary, C.S. (2004) Denaturing gradient gel electrophoresis of nitrifying microbes associated with tropical sponges. Boll Mus Ist Biol Univ Genova 68 : 279 289.
-
(2004)
Boll Mus Ist Biol Univ Genova
, vol.68
, pp. 279-289
-
-
Diaz, C.M.1
Akob, D.2
Cary, C.S.3
-
15
-
-
12244310172
-
Quantification of ammonia-oxidizing bacteria and factors controlling nitrification in salt marsh sediments
-
Dollhopf, S.L., Hyun, J.H., Smith, A.C., Adams, H.A., O'Brien, S. Kostka, J.E. (2005) Quantification of ammonia-oxidizing bacteria and factors controlling nitrification in salt marsh sediments. Appl Environ Microbiol 71 : 240 246.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 240-246
-
-
Dollhopf, S.L.1
Hyun, J.H.2
Smith, A.C.3
Adams, H.A.4
O'Brien, S.5
Kostka, J.E.6
-
16
-
-
52949147962
-
-
Amplification of the amoA gene of Nitrosococcus oceani bacteria using Eppendorf® MasterTaq® [WWW document]. URL
-
Dudeck, K.L. Dustman, W.A. (2001) Amplification of the amoA gene of Nitrosococcus oceani bacteria using Eppendorf® MasterTaq® [WWW document]. URL http://www.bio-medicine.org/biology-technology/.
-
(2001)
-
-
Dudeck, K.L.1
Dustman, W.A.2
-
17
-
-
2942620063
-
Discovery of a novel candidate phylum 'Poribacteria' in marine sponges
-
Fieseler, L., Horn, M., Wagner, M. Hentschel, U. (2004) Discovery of a novel candidate phylum 'Poribacteria' in marine sponges. Appl Environ Microbiol 70 : 3724 3732.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3724-3732
-
-
Fieseler, L.1
Horn, M.2
Wagner, M.3
Hentschel, U.4
-
18
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis, C.A., Roberts, K.J., Beman, J.M., Santoro, A.E. Oakley, B.B. (2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102 : 14683 14688.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
19
-
-
2942620016
-
Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water
-
Freitag, T.E. Prosser, J.I. (2004) Differences between betaproteobacterial ammonia-oxidizing communities in marine sediments and those in overlying water. Appl Environ Microbiol 70 : 3789 3793.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3789-3793
-
-
Freitag, T.E.1
Prosser, J.I.2
-
20
-
-
33845286513
-
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
-
Hallam, S.J., Konstantinidis, K.T., Putnam, N., Schleper, C., Watanabe, Y., Sugahara, J., et al. (2006a) Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci USA 103 : 18296 18301.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18296-18301
-
-
Hallam, S.J.1
Konstantinidis, K.T.2
Putnam, N.3
Schleper, C.4
Watanabe, Y.5
Sugahara, J.6
-
21
-
-
33646260901
-
Pathways of carbon assimilation and ammonia-oxidation suggested by environmental genomic analyses of marine Crenarchaeota
-
Hallam, S.J., Mincer, T.J., Schleper, C., Preston, C.M., Roberts, K., Richardson, P.M. DeLong, E.F. (2006b) Pathways of carbon assimilation and ammonia-oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol 4 : e95.
-
(2006)
PLoS Biol
, vol.4
-
-
Hallam, S.J.1
Mincer, T.J.2
Schleper, C.3
Preston, C.M.4
Roberts, K.5
Richardson, P.M.6
Delong, E.F.7
-
22
-
-
0036729439
-
Molecular evidence for a uniform microbial community in sponges from different oceans
-
Hentschel, U., Hopke, J., Horn, M., Friedrich, A.B., Wagner, M., Hacker, J. Moore, B.S. (2002) Molecular evidence for a uniform microbial community in sponges from different oceans. Appl Environ Microb 68 : 4431 4440.
-
(2002)
Appl Environ Microb
, vol.68
, pp. 4431-4440
-
-
Hentschel, U.1
Hopke, J.2
Horn, M.3
Friedrich, A.B.4
Wagner, M.5
Hacker, J.6
Moore, B.S.7
-
24
-
-
52949116224
-
-
Align: a multicolor sequence alignment editor [WWW document]. URL
-
Hepperle, D. (2002) Align: a multicolor sequence alignment editor [WWW document]. URL http://science.do-mix.de/software.phd.
-
(2002)
-
-
Hepperle, D.1
-
25
-
-
39649111529
-
-
Mar Biol
-
Hoffmann, F., Røy, H., Bayer, K., Hentschel, U., Pfannkuchen, M., Brümmer, F. de Beer, D. (2008) Oxygen and pumping dynamics in the Mediterranean sponge Aplysina aerophoba. Mar Biol 153 : 1257 1264.
-
(2008)
Oxygen and Pumping Dynamics in the Mediterranean Sponge Aplysina Aerophoba
, vol.153
, pp. 1257-1264
-
-
Hoffmann, F.1
Røy, H.2
Bayer, K.3
Hentschel, U.4
Pfannkuchen, M.5
Brümmer, F.6
De Beer, D.7
-
26
-
-
0036198672
-
Widespread distribution in polar oceans of a 16S rRNA gene sequence with affinity to Nitrosospira-like ammonia-oxidizing bacteria
-
Hollibaugh, J.T., Bano, N. Ducklow, H.W. (2002) Widespread distribution in polar oceans of a 16S rRNA gene sequence with affinity to Nitrosospira-like ammonia-oxidizing bacteria. Appl Environ Microbiol 68 : 1478 1484.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1478-1484
-
-
Hollibaugh, J.T.1
Bano, N.2
Ducklow, H.W.3
-
27
-
-
33846525508
-
Genus-specific associations of marine sponges with group I crenarchaeotes
-
Holmes, B.M. Blanch, H.W. (2006) Genus-specific associations of marine sponges with group I crenarchaeotes. Mar Biol 150 : 759 772.
-
(2006)
Mar Biol
, vol.150
, pp. 759-772
-
-
Holmes, B.M.1
Blanch, H.W.2
-
28
-
-
0028791540
-
Evidence that particulate monooxygenase and ammonia monooxygenase may be evolutionarily related
-
Holmes, A., Costello, A., Lidstrom, M. Murrell, J. (1995) Evidence that particulate monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol Lett 132 : 203 208.
-
(1995)
FEMS Microbiol Lett
, vol.132
, pp. 203-208
-
-
Holmes, A.1
Costello, A.2
Lidstrom, M.3
Murrell, J.4
-
29
-
-
0034849408
-
Mrbayes: Bayesian inference of phylogeny
-
Huelsenbeck, J. Ronquist, F. (2001) mrbayes: Bayesian inference of phylogeny. Bioinformatics 17 : 754 755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.1
Ronquist, F.2
-
30
-
-
33646262107
-
Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon
-
Ingalls, A.E., Shah, S.R., Hansman, R.L., Aluwihare, L.I., Santos, G.M., Druffel, E.R.M. Pearson, A. (2006) Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon. Proc Natl Acad Sci USA 103 : 6442 6447.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6442-6447
-
-
Ingalls, A.E.1
Shah, S.R.2
Hansman, R.L.3
Aluwihare, L.I.4
Santos, G.M.5
Druffel, E.R.M.6
Pearson, A.7
-
31
-
-
34249654599
-
Sponges as a source of dissolved inorganic nitrogen: Nitrification mediated by temperate sponges
-
Jiménez, E. Ribes, M. (2007) Sponges as a source of dissolved inorganic nitrogen: nitrification mediated by temperate sponges. Limnol Oceanogr 52 : 948 958.
-
(2007)
Limnol Oceanogr
, vol.52
, pp. 948-958
-
-
Jiménez, E.1
Ribes, M.2
-
32
-
-
0033771975
-
Identification of novel archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization
-
Jurgens, G., Glöckner, F., Amann, R., Saano, A., Montonen, L., Likolammi, M. Munster, U. (2000) Identification of novel archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol Ecol 34 : 45 56.
-
(2000)
FEMS Microbiol Ecol
, vol.34
, pp. 45-56
-
-
Jurgens, G.1
Glöckner, F.2
Amann, R.3
Saano, A.4
Montonen, L.5
Likolammi, M.6
Munster, U.7
-
33
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Koenneke, M., Bernhard, A.E., de la Torre, J.R., Walker, C.B., Waterbury, J.B. Stahl, D.A. (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437 : 543 546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Koenneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
34
-
-
8744287762
-
The lithoautotrophic ammonia-oxidizers
-
In. Dworkin, M. (ed.). New York, NY, USA: Springer Verlag. [WWW document]. URL
-
Koops, H.-P., Purkhold, U., Pommerening-Röser, A., Timmermann, G. Wagner, M. (2003) The lithoautotrophic ammonia-oxidizers. In The Prokaryotes, 3rd edn. Dworkin, M. (ed.). New York, NY, USA : Springer Verlag [WWW document]. URL http://www.microbial-ecology.net/pdf_download_free/113.pdf.
-
(2003)
The Prokaryotes, 3rd Edn.
-
-
Koops, H.-P.1
Purkhold, U.2
Pommerening-Röser, A.3
Timmermann, G.4
Wagner, M.5
-
35
-
-
0034775280
-
Ammonia-oxidizing bacteria: A model for molecular microbial ecology
-
Kowalchuk, G.A. Stephen, J.R. (2001) Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55 : 485 529.
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
36
-
-
34249862426
-
From the cover: Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea
-
Lam, P., Jensen, M.M., Lavik, G., McGinnis, D.R., Mueller, B., Schubert, C.J., et al. (2007) From the cover: linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc Natl Acad Sci USA 104 : 7104 7109.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 7104-7109
-
-
Lam, P.1
Jensen, M.M.2
Lavik, G.3
McGinnis, D.R.4
Mueller, B.5
Schubert, C.J.6
-
37
-
-
0041565166
-
Diversity of symbiotic archaeal communities in marine sponges from Korea
-
Lee, E.Y., Lee, H.K., Lee, Y.K., Sim, C.J. Lee, J.H. (2003) Diversity of symbiotic archaeal communities in marine sponges from Korea. Biomol Eng 20 : 299 304.
-
(2003)
Biomol Eng
, vol.20
, pp. 299-304
-
-
Lee, E.Y.1
Lee, H.K.2
Lee, Y.K.3
Sim, C.J.4
Lee, J.H.5
-
38
-
-
33747479446
-
Archaea predominate among ammonia-oxidizing prokaryotes in soils
-
Leininger, S., Urich, T., Schloter, M., Schwark, L., Qi, J., Nicol, G.W., et al. (2006) Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442 : 806 809.
-
(2006)
Nature
, vol.442
, pp. 806-809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
Schwark, L.4
Qi, J.5
Nicol, G.W.6
-
39
-
-
0032488780
-
Precambrian sponges with cellular structures
-
Li, C.W., Chen, J.Y. Hua, T.E. (1998) Precambrian sponges with cellular structures. Science 279 : 879 882.
-
(1998)
Science
, vol.279
, pp. 879-882
-
-
Li, C.W.1
Chen, J.Y.2
Hua, T.E.3
-
40
-
-
0037258055
-
ProbeBase - An online resource for rRNA-targeted oligonucleotide probes
-
Loy, A., Horn, M. Wagner, M. (2003) probeBase - an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res 31 : 514 516.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 514-516
-
-
Loy, A.1
Horn, M.2
Wagner, M.3
-
41
-
-
2542523843
-
Arb: A software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, et al. (2004) arb: a software environment for sequence data. Nucleic Acids Res 32 : 1363 1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
-
42
-
-
19344365907
-
Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification rates in intertidal sediments and rocky biofilms of the Douro River estuary, Portugal
-
Magalhães, C.M., Joye, S.B., Moreira, R.M., Wiebe, W.J. Bordalo, A.A. (2005) Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification rates in intertidal sediments and rocky biofilms of the Douro River estuary, Portugal. Wat Res 39 : 1783 1794.
-
(2005)
Wat Res
, vol.39
, pp. 1783-1794
-
-
Magalhães, C.M.1
Joye, S.B.2
Moreira, R.M.3
Wiebe, W.J.4
Bordalo, A.A.5
-
43
-
-
0030620440
-
Vertical distribution and phylogenetic characterization of marine planktonic archaea in the Santa Barbara Channel
-
Massana, R., Murray, A., Preston, C. DeLong, E.F. (1997) Vertical distribution and phylogenetic characterization of marine planktonic archaea in the Santa Barbara Channel. Appl Environ Microbiol 63 : 50 56.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 50-56
-
-
Massana, R.1
Murray, A.2
Preston, C.3
Delong, E.F.4
-
44
-
-
0030001221
-
Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria
-
Mobarry, B.K., Wagner, M., Urbain, V., Rittmann, B.E. Stahl, D.A. (1996) Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria. Appl Environ Microbiol 62 : 2156 2162.
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2156-2162
-
-
Mobarry, B.K.1
Wagner, M.2
Urbain, V.3
Rittmann, B.E.4
Stahl, D.A.5
-
45
-
-
34249875441
-
Ammonia-oxidizing β-proteobacteria from the oxygen minimum zone off northern Chile
-
Molina, V., Ulloa, O., Farías, L., Urrutia, H., Ramírez, S., Junier, P. Witzel, K.-P. (2007) Ammonia-oxidizing β-proteobacteria from the oxygen minimum zone off northern Chile. Appl Environ Microbiol 73 : 3547 3555.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3547-3555
-
-
Molina, V.1
Ulloa, O.2
Farías, L.3
Urrutia, H.4
Ramírez, S.5
Junier, P.6
Witzel, K.-P.7
-
46
-
-
13544275091
-
Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California
-
O'Mullan, G.D. Ward, B.B. (2005) Relationship of temporal and spatial variabilities of ammonia-oxidizing bacteria to nitrification rates in Monterey Bay, California. Appl Environ Microbiol 71 : 697 705.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 697-705
-
-
O'Mullan, G.D.1
Ward, B.B.2
-
47
-
-
0003409380
-
-
New York, NY, USA: Pergamon Press.
-
Parsons, T.R., Maita, Y. Lalli, C.M. (1984) Manual of Chemical and Biological Methods for Seawater Analysis. New York, NY, USA : Pergamon Press.
-
(1984)
Manual of Chemical and Biological Methods for Seawater Analysis.
-
-
Parsons, T.R.1
Maita, Y.2
Lalli, C.M.3
-
48
-
-
0032975677
-
Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in the northwestern Mediterranean Sea
-
Phillips, C., Smith, Z., Embley, T.M. Prosser, J.I. (1999) Phylogenetic differences between particle-associated and planktonic ammonia-oxidizing bacteria of the β-subdivision of the class Proteobacteria in the northwestern Mediterranean Sea. Appl Environ Microbiol 65 : 779 786.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 779-786
-
-
Phillips, C.1
Smith, Z.2
Embley, T.M.3
Prosser, J.I.4
-
49
-
-
0032406564
-
Determination of nitrate in the blood of the hydrothermal vent tubeworm Rifteria pachyptila using nitrate reduction assay
-
Pospesel, M., Hentschel, U. Felbeck, H. (1998) Determination of nitrate in the blood of the hydrothermal vent tubeworm Rifteria pachyptila using nitrate reduction assay. Pergamon Deep Sea Res I 45 : 2189 2200.
-
(1998)
Pergamon Deep Sea Res I
, vol.45
, pp. 2189-2200
-
-
Pospesel, M.1
Hentschel, U.2
Felbeck, H.3
-
50
-
-
15844365305
-
A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov
-
Preston, C.M., Wu, K.Y., Molinski, T.F. DeLong, E.F. (1996) A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc Natl Acad Sci USA 93 : 6241 6246.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 6241-6246
-
-
Preston, C.M.1
Wu, K.Y.2
Molinski, T.F.3
Delong, E.F.4
-
51
-
-
0034466757
-
Phylogeny of all recognized species of ammonia-oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
-
Purkhold, U., Pommerening-Röser, A., Juretschko, S., Schmid, M., Koops, H.-P. Wagner, M. (2000) Phylogeny of all recognized species of ammonia-oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Micobiol 66 : 5368 5382.
-
(2000)
Appl Environ Micobiol
, vol.66
, pp. 5368-5382
-
-
Purkhold, U.1
Pommerening-Röser, A.2
Juretschko, S.3
Schmid, M.4
Koops, H.-P.5
Wagner, M.6
-
52
-
-
0030814870
-
The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
-
Rotthauwe, J.-H., Witzel, K.-P. Liesack, W. (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Micobiol 63 : 4704 4712.
-
(1997)
Appl Environ Micobiol
, vol.63
, pp. 4704-4712
-
-
Rotthauwe, J.-H.1
Witzel, K.-P.2
Liesack, W.3
-
53
-
-
0028789401
-
Differential inhibition by allylsulfide of nitrification and methane oxidation in freshwater sediment
-
Roy, R. Knowles, R. (1995) Differential inhibition by allylsulfide of nitrification and methane oxidation in freshwater sediment. Appl Environ Micobiol 61 : 4278 4283.
-
(1995)
Appl Environ Micobiol
, vol.61
, pp. 4278-4283
-
-
Roy, R.1
Knowles, R.2
-
54
-
-
0004136246
-
-
New York, NY, USA: Cold Spring Harbor Laboratory Press.
-
Sambrook, J., Fritsch, E.F. Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. New York, NY, USA : Cold Spring Harbor Laboratory Press.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Edn.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
55
-
-
0031904158
-
Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing
-
Stephen, J.R., Kowalchuk, G.A., Bruns, M.A.V., McCaig, A.E., Phillips, C.J., Embley, T.M. Prosser, J.I. (1998) Analysis of beta-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing. Appl Environ Microbiol 64 : 2958 2965.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2958-2965
-
-
Stephen, J.R.1
Kowalchuk, G.A.2
Bruns, M.A.V.3
McCaig, A.E.4
Phillips, C.J.5
Embley, T.M.6
Prosser, J.I.7
-
56
-
-
34250733462
-
Sponge-associated microorganisms: Evolution, ecology, and biotechnological potential
-
Taylor, M.W., Radax, R., Steger, D. Wagner, M. (2007) Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol Rev 71 : 295 347.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 295-347
-
-
Taylor, M.W.1
Radax, R.2
Steger, D.3
Wagner, M.4
-
57
-
-
0028980130
-
Seasonal patterns of nitrification and denitrification in a natural and a restored salt marsh
-
Thompson, S.P., Paerl, H.W. Go, M.C. (1995) Seasonal patterns of nitrification and denitrification in a natural and a restored salt marsh. Estuaries 18 : 399 408.
-
(1995)
Estuaries
, vol.18
, pp. 399-408
-
-
Thompson, S.P.1
Paerl, H.W.2
Go, M.C.3
-
58
-
-
28644435323
-
Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling
-
Treusch, A.H., Leininger, S., Kletzin, A., Schuster, S.C., Klenk, H.P. Schleper, C. (2005) Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling. Environ Microbiol 7 : 1985 1995.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1985-1995
-
-
Treusch, A.H.1
Leininger, S.2
Kletzin, A.3
Schuster, S.C.4
Klenk, H.P.5
Schleper, C.6
-
59
-
-
0034868926
-
2O production, nitrification and denitrification in an estuarine sediment
-
2O production, nitrification and denitrification in an estuarine sediment. Estuar Coast Shelf S 52 : 769 781.
-
(2001)
Estuar Coast Shelf S
, vol.52
, pp. 769-781
-
-
Usui, T.1
Koike, I.2
Ogura, N.3
-
60
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter, J.C., Remington, K., Heidelberg, J.F., Halpern, A.L., Rusch, D., Eisen, J.E., et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304 : 66 74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.E.6
-
62
-
-
2542449312
-
Bacterial nitrification activity directly associated with isolated benthic marine animals
-
Welsh, D.T. Castadelli, G. (2004) Bacterial nitrification activity directly associated with isolated benthic marine animals. Mar Biol 144 : 1029 1037.
-
(2004)
Mar Biol
, vol.144
, pp. 1029-1037
-
-
Welsh, D.T.1
Castadelli, G.2
-
63
-
-
33747596691
-
Archaeal nitrification in the ocean
-
Wuchter, C., Abbas, B., Coolen, M.J., Herfort, L., van Bleijswijk, J., Timmers, P., et al. (2006) Archaeal nitrification in the ocean. Proc Natl Acad Sci USA 103 : 12317 12322.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12317-12322
-
-
Wuchter, C.1
Abbas, B.2
Coolen, M.J.3
Herfort, L.4
Van Bleijswijk, J.5
Timmers, P.6
-
64
-
-
34250813048
-
In situ feeding and metabolism of glass sponges (Hexactinellida, Porifera) studied in a deep temperate fjord with a remotely operated submersible
-
Yahel, G., Whitney, F., Reiswig, H.M., Eerkes-Medrano, D.I. Leys, S.P. (2007) In situ feeding and metabolism of glass sponges (Hexactinellida, Porifera) studied in a deep temperate fjord with a remotely operated submersible. Limnol Oceanogr 52 : 428 440.
-
(2007)
Limnol Oceanogr
, vol.52
, pp. 428-440
-
-
Yahel, G.1
Whitney, F.2
Reiswig, H.M.3
Eerkes-Medrano, D.I.4
Leys, S.P.5
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