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Volumn 24, Issue 5, 2008, Pages 825-847

Parsimony and explanatory power

Author keywords

[No Author keywords available]

Indexed keywords

COMMON ANCESTRY; HERITABILITY; PARSIMONY ANALYSIS; PHYLOGENY;

EID: 52949087195     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2008.00214.x     Document Type: Review
Times cited : (53)

References (58)
  • 1
    • 0000266922 scopus 로고
    • A randomization test for phylogenetic information in systematic data
    • Archie, J.W., 1989. A randomization test for phylogenetic information in systematic data. Syst. Zool., 38, 219 252.
    • (1989) Syst. Zool. , vol.38 , pp. 219-252
    • Archie, J.W.1
  • 2
    • 6544247208 scopus 로고
    • Random cladistics
    • Carpenter, J.M., 1992. Random cladistics. Cladistics, 8, 147 153.
    • (1992) Cladistics , vol.8 , pp. 147-153
    • Carpenter, J.M.1
  • 3
    • 0000443251 scopus 로고    scopus 로고
    • PTP is meaningless, T-PTP is contradictory: A reply to Trueman
    • Carpenter, J.M., Goloboff, P.A., Farris, J.S., 1998. PTP is meaningless, T-PTP is contradictory: a reply to Trueman. Cladistics, 14, 105 116.
    • (1998) Cladistics , vol.14 , pp. 105-116
    • Carpenter, J.M.1    Goloboff, P.A.2    Farris, J.S.3
  • 4
    • 17444363410 scopus 로고    scopus 로고
    • Parsimony and the problem of inapplicables in sequence data
    • In: Albert, V.A. (. Ed. Oxford University Press, Oxford, pp.
    • De Laet, J.E., 2005. Parsimony and the problem of inapplicables in sequence data. In: Parsimony, Phylogeny and Genomics. Albert, V.A. (Ed. Oxford University Press, Oxford, pp. 81 116.
    • (2005) Parsimony, Phylogeny and Genomics. , pp. 81-116
    • De Laet, J.E.1
  • 5
    • 0025288758 scopus 로고
    • Chance marsupial relationships
    • Faith, D.P., 1990. Chance marsupial relationships. Nature, 345, 393 394.
    • (1990) Nature , vol.345 , pp. 393-394
    • Faith, D.P.1
  • 6
    • 38249008775 scopus 로고
    • On corroboration: A reply to Carpenter
    • Faith, D.P., 1992. On corroboration: a reply to Carpenter. Cladistics, 8, 265 273.
    • (1992) Cladistics , vol.8 , pp. 265-273
    • Faith, D.P.1
  • 7
    • 22844454070 scopus 로고    scopus 로고
    • Error and the growth of experimental knowledge
    • Faith, D.P., 1999. Error and the growth of experimental knowledge. Syst. Biol., 48, 675 679.
    • (1999) Syst. Biol. , vol.48 , pp. 675-679
    • Faith, D.P.1
  • 8
    • 1542580018 scopus 로고    scopus 로고
    • From species to supertrees: Popperian corroboration and some current controversies in systematics
    • Faith, D.P., 2004. From species to supertrees: Popperian corroboration and some current controversies in systematics. Aust. Syst. Bot., 17, 1 16.
    • (2004) Aust. Syst. Bot. , vol.17 , pp. 1-16
    • Faith, D.P.1
  • 9
    • 30344480828 scopus 로고    scopus 로고
    • Science and philosophy for molecular systematics: Which is the cart and which is the horse?
    • Faith, D.P., 2006. Science and philosophy for molecular systematics: which is the cart and which is the horse? Mol. Phylo. Evol., 38, 553 557.
    • (2006) Mol. Phylo. Evol. , vol.38 , pp. 553-557
    • Faith, D.P.1
  • 10
    • 0002296484 scopus 로고
    • Could a cladogram this short have arisen by chance alone? on permutation tests for cladistic structure
    • Faith, D.P., Cranston, P.S., 1991. Could a cladogram this short have arisen by chance alone? On permutation tests for cladistic structure Cladistics 7, 1 28.
    • (1991) Cladistics , vol.7 , pp. 1-28
    • Faith, D.P.1    Cranston, P.S.2
  • 11
    • 11944264422 scopus 로고
    • Probability, parsimony, and Popper
    • Faith, D.P., Cranston, P.S., 1992. Probability, parsimony, and Popper. Syst. Biol., 41, 252 257.
    • (1992) Syst. Biol. , vol.41 , pp. 252-257
    • Faith, D.P.1    Cranston, P.S.2
  • 12
    • 0030311150 scopus 로고    scopus 로고
    • When the topology-dependent permutation test T-PTP for a null hypothesis of non-monophyly returns significant support for monophyly, should that be equated with a rejecting a null hypothesis, b rejecting a null hypothesis of 'no structure', c failing to falsify a hypothesis of monophyly, or d none of the above?
    • Faith, D.P., Trueman, J.W.H., 1996. When the topology-dependent permutation test T-PTP for a null hypothesis of non-monophyly returns significant support for monophyly, should that be equated with a rejecting a null hypothesis, b rejecting a null hypothesis of 'no structure', c failing to falsify a hypothesis of monophyly, or d none of the above? Syst. Biol., 45, 580 586.
    • (1996) Syst. Biol. , vol.45 , pp. 580-586
    • Faith, D.P.1    Trueman, J.W.H.2
  • 13
    • 0035527351 scopus 로고    scopus 로고
    • Towards an inclusive philosophy for phylogenetic inference
    • Faith, D.P., Trueman, J.W.H., 2001. Towards an inclusive philosophy for phylogenetic inference. Syst. Biol., 50, 331 350.
    • (2001) Syst. Biol. , vol.50 , pp. 331-350
    • Faith, D.P.1    Trueman, J.W.H.2
  • 14
    • 84959743928 scopus 로고
    • Methods for computing Wagner trees
    • Farris, J.S., 1970. Methods for computing Wagner trees. Syst. Zool., 19, 83 92.
    • (1970) Syst. Zool. , vol.19 , pp. 83-92
    • Farris, J.S.1
  • 15
    • 84959735289 scopus 로고
    • The efficient diagnoses of the phylogenetic system
    • Farris, J.S., 1980. The efficient diagnoses of the phylogenetic system. Syst. Zool., 29, 386 401.
    • (1980) Syst. Zool. , vol.29 , pp. 386-401
    • Farris, J.S.1
  • 16
    • 0001151063 scopus 로고
    • The logical basis of phylogenetic analysis
    • In: Platnick, N.I., Funk, V.A. (. Eds. Columbia University Press, New York, pp.
    • Farris, J.S., 1983. The logical basis of phylogenetic analysis. In: Platnick, N.I., Funk, V.A. (Eds Advances in Cladistics II. Columbia University Press, New York, pp. 7 36.
    • (1983) Advances in Cladistics II. , pp. 7-36
    • Farris, J.S.1
  • 17
    • 0001810596 scopus 로고
    • Excess homoplasy ratios
    • Farris, J.S., 1991. Excess homoplasy ratios. Cladistics, 7, 81 91.
    • (1991) Cladistics , vol.7 , pp. 81-91
    • Farris, J.S.1
  • 18
    • 0000375117 scopus 로고
    • Conjectures and refutations
    • Farris, J.S., 1995. Conjectures and refutations. Cladistics, 11, 105 118.
    • (1995) Cladistics , vol.11 , pp. 105-118
    • Farris, J.S.1
  • 19
    • 0000543191 scopus 로고    scopus 로고
    • Names and origins
    • Farris, J.S., 1996. Names and origins. Cladistics, 12, 263 264.
    • (1996) Cladistics , vol.12 , pp. 263-264
    • Farris, J.S.1
  • 20
    • 0000074814 scopus 로고    scopus 로고
    • Likelihood and inconsistency
    • Farris, J.S., 1999. Likelihood and inconsistency. Cladistics 15, 199 204.
    • (1999) Cladistics , vol.15 , pp. 199-204
    • Farris, J.S.1
  • 21
    • 0034465971 scopus 로고    scopus 로고
    • Corroboration versus "strongest evidence"
    • Farris, J.S., 2000. Corroboration versus "strongest evidence". Cladistics, 16, 385 393.
    • (2000) Cladistics , vol.16 , pp. 385-393
    • Farris, J.S.1
  • 22
    • 0001230425 scopus 로고
    • Synapomorphy, parsimony, and evidence
    • Farris, J.S., Kluge, A.G., 1986. Synapomorphy, parsimony, and evidence. Taxon, 35, 298 306.
    • (1986) Taxon , vol.35 , pp. 298-306
    • Farris, J.S.1    Kluge, A.G.2
  • 23
    • 0035527348 scopus 로고    scopus 로고
    • Popper and likelihood versus "popper.*"
    • Farris, J.S., Kluge, A.G., Carpenter, J.M., 2001. Popper and likelihood versus "Popper.*". Syst. Biol., 50, 438 444.
    • (2001) Syst. Biol. , vol.50 , pp. 438-444
    • Farris, J.S.1    Kluge, A.G.2    Carpenter, J.M.3
  • 24
    • 84959848780 scopus 로고
    • Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters
    • Felsenstein, J., 1973. Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Syst. Zool., 22, 240 249.
    • (1973) Syst. Zool. , vol.22 , pp. 240-249
    • Felsenstein, J.1
  • 25
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool., 27, 401 410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 26
    • 0002975381 scopus 로고
    • Alternative methods of phylogenetic inference and their interrelationship
    • Felsenstein, J., 1979. Alternative methods of phylogenetic inference and their interrelationship. Syst. Zool., 28, 49 62.
    • (1979) Syst. Zool. , vol.28 , pp. 49-62
    • Felsenstein, J.1
  • 27
    • 0001306645 scopus 로고
    • A likelihood approach to character weighting and what it tells us about parsimony and compatibility
    • Felsenstein, J., 1981. A likelihood approach to character weighting and what it tells us about parsimony and compatibility. Biol. Jour. Linn. Soc., 16, 183 196.
    • (1981) Biol. Jour. Linn. Soc. , vol.16 , pp. 183-196
    • Felsenstein, J.1
  • 28
    • 0003389826 scopus 로고
    • Methods for inferring phylogenies: A statistical view
    • In: Felsenstein, J. (. Ed. Springer-Verlag, Heidelberg, pp.
    • Felsenstein, J., 1983. Methods for inferring phylogenies: a statistical view. In: Felsenstein, J. (Ed Numerical Taxonomy. Springer-Verlag, Heidelberg, pp. 315 334.
    • (1983) Numerical Taxonomy. , pp. 315-334
    • Felsenstein, J.1
  • 29
    • 0040126598 scopus 로고
    • The statistical approach to inferring evolutionary trees and what it tells us about parsimony and compatibility
    • In: Duncan, T., Stuessy, T. (. Eds. Columbia University Press, New York, pp.
    • Felsenstein, J., 1984. The statistical approach to inferring evolutionary trees and what it tells us about parsimony and compatibility. In: Duncan, T., Stuessy, T. (Eds Cladistics: Perspectives on the Reconstruction of Evolutionary History. Columbia University Press, New York, pp. 169 191.
    • (1984) Cladistics: Perspectives on the Reconstruction of Evolutionary History. , pp. 169-191
    • Felsenstein, J.1
  • 32
    • 1642326753 scopus 로고    scopus 로고
    • Transformation series as an ideographic character concept
    • Grant, T., Kluge, A.G., 2004. Transformation series as an ideographic character concept. Cladistics, 20, 23 31.
    • (2004) Cladistics , vol.20 , pp. 23-31
    • Grant, T.1    Kluge, A.G.2
  • 36
    • 0033511221 scopus 로고    scopus 로고
    • The science of phylogenetic systematics: Explanation, prediction, and test
    • Kluge, A.G., 1999. The science of phylogenetic systematics: explanation, prediction, and test. Cladistics, 15, 429 436.
    • (1999) Cladistics , vol.15 , pp. 429-436
    • Kluge, A.G.1
  • 37
    • 0035527349 scopus 로고    scopus 로고
    • Philosophical conjectures and their refutation
    • Kluge, A.G., 2001. Philosophical conjectures and their refutation. Syst. Biol., 50, 322 330.
    • (2001) Syst. Biol. , vol.50 , pp. 322-330
    • Kluge, A.G.1
  • 38
    • 0043241707 scopus 로고    scopus 로고
    • The repugnant and the mature in phylogenetic inference: Atemporal similarity and historical identity
    • Kluge, A.G., 2003. The repugnant and the mature in phylogenetic inference: atemporal similarity and historical identity. Cladistics, 19, 356 368.
    • (2003) Cladistics , vol.19 , pp. 356-368
    • Kluge, A.G.1
  • 39
    • 84963036271 scopus 로고
    • Quantitative phyletics and the evolution of anurans
    • Kluge, A.G., Farris, J.S., 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool., 18, 1 32.
    • (1969) Syst. Zool. , vol.18 , pp. 1-32
    • Kluge, A.G.1    Farris, J.S.2
  • 40
    • 33745011394 scopus 로고    scopus 로고
    • From conviction to anti-superfluity: Old and new justifications of parsimony in phylogenetic inference
    • Kluge, A.G., Grant, T., 2006. From conviction to anti-superfluity: old and new justifications of parsimony in phylogenetic inference. Cladistics, 22, 276 288.
    • (2006) Cladistics , vol.22 , pp. 276-288
    • Kluge, A.G.1    Grant, T.2
  • 41
    • 0038633960 scopus 로고    scopus 로고
    • Empirical equivalence and underdetermination
    • In: Balashov, Y., Rosenberg, A. (. Eds. Routledge, London, pp.
    • Laudan, L., Leplin, J., 2002. Empirical equivalence and underdetermination. In: Balashov, Y., Rosenberg, A. (Eds Philosophy of Science. Contemporary Readings. Routledge, London, pp. 362 384.
    • (2002) Philosophy of Science. Contemporary Readings. , pp. 362-384
    • Laudan, L.1    Leplin, J.2
  • 42
    • 0038918486 scopus 로고
    • Report on nineteenth international taxonomy conference
    • Legendre, P., 1986. Report on nineteenth international taxonomy conference. Syst. Zool., 35, 135 139.
    • (1986) Syst. Zool. , vol.35 , pp. 135-139
    • Legendre, P.1
  • 48
    • 0035527346 scopus 로고    scopus 로고
    • Philosophy and phylogenetic inference: A comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration
    • de Queiroz, K., Poe, S., 2001. Philosophy and phylogenetic inference: a comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration. Syst. Biol., 50, 305 321.
    • (2001) Syst. Biol. , vol.50 , pp. 305-321
    • De Queiroz, K.1    Poe, S.2
  • 49
    • 0038487291 scopus 로고    scopus 로고
    • Failed refutations: Further comments on parsimony and likelihood methods and their relationship to Popper's degree of corroboration
    • de Queiroz, K., Poe, S., 2003. Failed refutations: further comments on parsimony and likelihood methods and their relationship to Popper's degree of corroboration. Syst. Biol., 52, 352 367.
    • (2003) Syst. Biol. , vol.52 , pp. 352-367
    • De Queiroz, K.1    Poe, S.2
  • 50
    • 0038632315 scopus 로고    scopus 로고
    • Popper and Systematics
    • Rieppel, O., 2003. Popper and Systematics. Syst. Biol., 52, 259 271.
    • (2003) Syst. Biol. , vol.52 , pp. 259-271
    • Rieppel, O.1
  • 52
    • 0035725563 scopus 로고    scopus 로고
    • Philosophy and phylogenetic inference: A comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration
    • Siddall, M.E., 2001. Philosophy and phylogenetic inference: a comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration. Cladistics, 17, 395 399.
    • (2001) Cladistics , vol.17 , pp. 395-399
    • Siddall, M.E.1
  • 54
    • 0028457461 scopus 로고
    • Reconstructing trees when sequence sites evolve at variable rates
    • Steel, M.A., Szekely, L.A., Hendy, M.D., 1994. Reconstructing trees when sequence sites evolve at variable rates. J. Comput. Biol., 1, 153 163.
    • (1994) J. Comput. Biol. , vol.1 , pp. 153-163
    • Steel, M.A.1    Szekely, L.A.2    Hendy, M.D.3
  • 55
    • 0031149251 scopus 로고    scopus 로고
    • Links between maximum likelihood and maximum parsimony under a simple model of site substitution
    • Tuffley, C., Steel, M., 1997. Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull. Math. Biol., 59, 581 607.
    • (1997) Bull. Math. Biol. , vol.59 , pp. 581-607
    • Tuffley, C.1    Steel, M.2
  • 57
    • 84959834965 scopus 로고
    • Karl R. Popper, systematics, and classification: A reply to Walter Bock and other evolutionary systematists
    • Wiley, E.O., 1975. Karl R. Popper, systematics, and classification: a reply to Walter Bock and other evolutionary systematists. Syst. Zool., 24, 233 243.
    • (1975) Syst. Zool. , vol.24 , pp. 233-243
    • Wiley, E.O.1


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