Identification of transcripts overexpressed during airway epithelium differentiation

European Respiratory Journal

Volumn 32, Issue 1, 2008, Pages 121-128

  Chhin, B ^a,b   Pham, J T ^a,b   El Zein, L ^a,b   Kaiser, K ^a   Merrot, O ^c   Bouvagnet, P ^a,b,d,e  

^a UNIVERSITÉ LYON 1   (France)

^b INSERM   (France)

^c CROIX ROUSSE HOSPITAL   (France)

^d HOSPICES CIVILS DE LYON   (France)

^e CBPE   (France)

Author keywords

Airway epithelium; Cilia; Human; Representational difference analysis; Transcriptome

Indexed keywords

ACTIN; ALPHA TROPOMYOSIN; BETA TUBULIN; COMPLEMENTARY DNA; FK 506 BINDING PROTEIN; INITIATION FACTOR; INITIATION FACTOR 1; LIPOCORTIN 1; MESSENGER RNA; RIBOSOME PROTEIN; TRANSCRIPTOME;

ARTICLE; CELL DIFFERENTIATION; CILIARY DYSKINESIA; CILIATED EPITHELIUM; CONTROLLED STUDY; DNA DETERMINATION; DNA SEQUENCE; GENE EXPRESSION; GENE IDENTIFICATION; GENE OVEREXPRESSION; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HUMAN; HUMAN CELL; HUMAN EXPERIMENT; LINKAGE ANALYSIS; NORMAL HUMAN; PRIORITY JOURNAL; REPRESENTATIONAL DIFFERENCE ANALYSIS; RESPIRATORY EPITHELIUM; RESPIRATORY TRACT DISEASE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; CELL CULTURE; CYTOLOGY; EPITHELIUM CELL; EUKARYOTIC FLAGELLUM; GENE EXPRESSION PROFILING; GENETICS; TURBINATE;

CELL DIFFERENTIATION; CELLS, CULTURED; CILIA; EPITHELIAL CELLS; GENE EXPRESSION PROFILING; HUMANS; TURBINATES;

EID: 52749090552     PISSN: 09031936     EISSN: 13993003     Source Type: Journal    
DOI: 10.1183/09031936.00172107     Document Type: Article

References (30)

1. Ostrowski LE, Blackburn K, Radde KM, et al. A proteomic analysis of human cilia: identification of novel components. Mol Cell Proteomics 2002; 1: 451-465.
2. Smith JC, Northey JG, Garg J, Pearlman RE, Siu KW. Robust method for proteome analysis by MS/MS using an entire translated genome: demonstration on the ciliome of Tetrahymena thermophila. J Proteome Res 2005; 4: 909-919.
3. Pazour GJ, Agrin N, Leszyk J, Witman GB. Proteomic analysis of a eukaryotic cilium. J Cell Biol 2005; 170: 103-113.
4. Keller LC, Romijn EP, Zamora I, Yates JR 3rd., Marshall WF., Proteomic analysis of isolated Chlamydomonas centrioles reveals orthologs of ciliary-disease genes. Curr Biol 2005; 15: 1090-1098.
5. Broadhead R, Dawe HR, Farr H, et al. Flagellar motility is required for the viability of the bloodstream trypanosome. Nature 2006; 440: 224-227.
6. Li JB, Gerdes JM, Haycraft CJ, et al. Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene. Cell 2004; 117: 541-552.
7. Avidor-Reiss T, Maer AM, Koundakjian E, et al. Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis. Cell 2004; 117: 527-539.
8. Stolc V, Samanta MP, Tongprasit W, Marshall WF. Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes. Proc Natl Acad Sci USA 2005; 102: 3703-3707.
9. Blacque OE, Perens EA, Boroevich KA, et al. Functional genomics of the cilium, a sensory organelle. Curr Biol 2005; 15: 935-941.
10. Swoboda P, Adler HT, Thomas JH. The RFX-type transcription factor DAF-19 regulates sensory neuron cilium formation in C. elegans. Mol Cell 2000; 5: 411-421.
11. Lonergan KM, Chari R, Deleeuw RJ, et al. Identification of novel lung genes in bronchial epithelium by serial analysis of gene expression. Am J Respir Cell Mol Biol 2006; 35: 651-661.
12. Ross AJ, Dailey LA, Brighton LE, Devlin RB. Transcriptional profiling of mucociliary differentiation in human airway epithelial cells. Am J Respir Cell Mol Biol 2007; 37: 169-185.
13. Inglis PN, Boroevich KA, Leroux MR. Piecing together a ciliome. Trends Genet 2006; 22: 491-500.
14. Lisitsyn N, Lisitsyn N, Wigler M. Cloning the differences between two complex genomes. Science 1993; 259: 946-951.
15. Hubank M, Schatz DG. Identifying differences in mRNA expression by representational difference analysis of cDNA. Nucleic Acids Res 1994; 22: 5640-5648.
16. Jorissen M, Willems T, Van der Schueren B, Verbeken E, De Boeck K. Ultrastructural expression of primary ciliary dyskinesia after ciliogenesis in culture. Acta Otorhinolaryngol Belg 2000; 54: 343-356.
17. UK Medical Research Council Laboratory of Molecular Biology, Staden Package. http://staden.sourceforge.net/ Date last updated: July 5, 2006.
18. Pearson WR, Lipman DJ. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 1988; 85: 2444-2448.
19. European Molecular Biology Laboratory-European Bioinformatics Institute, Wellcome Trust Sanger Institute, Ensembl. www.ensembl.org Date last updated: October 23, 2007. Date last accessed: December, 6: 2007.
20. National Center for Biotechnology Information, National Center for Biotechnology Information. NCBI Build 36.2. www.ncbi.nlm.nih.gov/ Date last updated: September 14, 2006. Date last accessed: December 6, 2007.
21. Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001; 29: e45.
22. Iannaccone A, Breuer DK, Wang XF, et al. Clinical and immunohistochemical evidence for an X linked retinitis pigmentosa syndrome with recurrent infections and hearing loss in association with an RPGR mutation. J Med Genet 2003; 40: e118.
23. Blouin JL, Meeks M, Radhakrishna U, et al. Primary ciliary dyskinesia: a genome-wide linkage analysis reveals extensive locus heterogeneity. Eur J Hum Genet 2000; 8: 109-118.
24. Meeks M, Walne A, Spiden S, et al. A locus for primary ciliary dyskinesia maps to chromosome 19q. J Med Genet 2000; 37: 241-244.
25. Jeganathan D, Chodhari R, Meeks M, et al. Loci for primary ciliary dyskinesia map to chromosome 16p12.1-12.2 and 15q13.1-15.1 in Faroe Islands and Israeli Druze genetic isolates. J Med Genet 2004; 41: 233-240.
26. Krawczynski MR, Witt M. PCD and RP: X-linked inheritance of both disorders? Pediatr Pulmonol 2004; 38: 88-89.
27. Rendtorff ND, Zhu M, Fagerheim T, et al. A novel missense mutation in ACTG1 causes dominant deafness in a Norwegian DFNA20/26 family, but ACTG1 mutations are not frequent among families with hereditary hearing impairment. Eur J Hum Genet 2006; 14: 1097-1105.
28. Munier A, Serres C, Kann ML, et al. Nm23/NDP kinases in human male germ cells: role in spermiogenesis and sperm motility? Exp Cell Res 2003; 289: 295-306.
29. Weterman MA, Ajubi N, van Dinter IM, et al. nmb, a novel gene, is expressed in low-metastatic human melanoma cell lines and xenografts. Int J Cancer 1995; 60: 73-81.
30. Howng SL, Hsu HC, Cheng TS, et al. A novel ninein-interaction protein, CGI-99, blocks ninein phosphorylation by GSK3β and is highly expressed in brain tumors. FEBS Lett 2004; 566: 162-168.