Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disiase genes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 10, 2005, Pages 3703-3707

  Stolc, Viktor ^a,b   Samanta, Manoj Pratim ^a,d   Tongprasit, Waraporn ^a   Marshall, Wallace F ^c  

^a NASA AMES RESEARCH CENTER   (United States)

^b YALE UNIVERSITY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d Systemix Institute   (United States)

Author keywords

Cilia; Flagella; Polycystic kidney disease; RNA transcription

Indexed keywords

ARTICLE; CHLAMYDOMONAS REINHARDTII; CILIARY MOTILITY; CILIATED EPITHELIUM; DATA ANALYSIS; DNA MICROARRAY; EUKARYOTIC FLAGELLUM; EXON; FLAGELLUM; GENE SEQUENCE; GENOME ANALYSIS; HYBRIDIZATION; KIDNEY POLYCYSTIC DISEASE; NONHUMAN; ORTHOLOGY; PRIORITY JOURNAL; REGENERATION; RNA TRANSCRIPTION; ZEBRA FISH;

NASA CENTER ARC; NASA DISCIPLINE CELL BIOLOGY; NASA PROGRAM FUNDAMENTAL SPACE BIOLOGY;

ANIMALS; CHLAMYDOMONAS REINHARDTII; EYE PROTEINS; FLAGELLA; GENOME, BACTERIAL; HUMANS; MICE; NUCLEAR PROTEINS; POLYCYSTIC KIDNEY DISEASES; REGENERATION; TRANSCRIPTION, GENETIC; ZEBRAFISH PROTEINS;

CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; DANIO RERIO;

EID: 14844346387     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0408358102     Document Type: Article

References (25)

1. Pazour, G. J. & Rosenbaum, J. L. (2002) Trends Cell Biol. 12, 551-555.
2. Ostrowski, L. E., Blackburn, K., Radde, K. M., Moyer, M. B., Schlatzer, D. M., Moseley, A. & Boucher, R. C. (2002) Mol. Cell. Proteomics 1, 451-465.
3. Li, J. B., Gerdes, J. M., Haycraft, C. J., Fan, Y., Teslovich, T. M., May-Simera, H., Li, H., Blacque, O. E., Li, L., Leitch, C. C., et al. (2004) Cell 117, 541-552.
4. Avidor-Reiss, T., Maer, A. M., Koundakjian, E., Polyanovsky, A., Keil, T., Subramaniam, S. & Zuker, C. S. (2004) Cell 117, 527-539.
5. Lefebvre, P. A. & Rosenbaum, J. L. (1986) Annu. Rev. Cell Biol. 2, 517-546.
6. Marshall, W. F. & Rosenbaum, J. L. (2001) J. Cell Biol. 155, 405-414.
7. Stolc, V., Gauhar, Z., Mason, C., Halasz, G., van Batenburg, M. F., Rifkin, S. A., Hua, S., Herreman, T., Tongprasit, W., Barbano, P. E., et al. (2004) Science 306, 655-660.
8. Birrell, G. W., Brown, J. A., Wu, H. I., Giaever, G., Chu, A. M., Davis, R. W. & Brown, J. M. (2002) Proc. Natl. Acad. Sci. USA. 99, 8778-8783.
9. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
10. Kent, W. J. (2002) Genome Res. 12, 656-664.
11. Nuwaysir, E. F., Huang, W., Albert, T. J., Singh, J., Nuwaysir, K., Pitas, A., Richmond, T., Gorski, T., Berg, J. P., Ballin, J., et al. (2002) Genome Res. 12, 1749-1755.
12. Witman, G. B. (1986) Methods Enzymol. 134, 280-290.
13. Hill, A. A., Hunter, C. P., Tsung, B. T., Tucker-Kellogg, G. & Brown, E. L. (2000) Saence 290, 809-812.
14. Bertone, P., Stolc, V., Royce, T. E., Rozowsky, J. S., Urban, A. E., Zhu, X., Rinn, J. L., Tongprasit, W., Samanta, M., Weissman, S., et al. (2004) Science 306, 2242-2246.
15. Stolc, V., Samanta, M. P., Tongprasit, W., Sethi, H., Liang, S., Hegeman, A., Nelson, C., Rancour, D., Bednarek, S., Ulrich, E., et al. (2005) Proc. Natl. Acad. Sci. USA, in press.
16. Liu, X. S., Brutlag, D. L. & Liu, J. S. (2002) Nat. Biotechnol. 20, 835-839.
17. Bailey, T. (1995) Ph.D. thesis (Univ. of California, San Diego).
18. Albert, T. J., Norton, J., Ott, M., Richmond, T., Nuwaysir, K., Nuwaysir, E. F., Stengele, K. P. & Green, R. D. (2003) Nucleic Acids Res. 31, e35.
19. Seixas, C., Casalou, C., Melo, L.V., Nolasco, S., Brogueira, P. & Soares, H. (2003) Exp. Cell Res. 290, 303-321.
20. Sun, Z., Amsterdam, A., Pazour, G. J., Cole, D. G., Miller, M. S. & Hopkins, N. (2004) Development (Cambridge, U.K.) 131, 4085-4093.
21. Amsterdam, A., Nissen, R. M., Sun, Z., Swindell, E. C., Farrington, S. & Hopkins, N. (2004) Proc. Natl. Acad. Sci. USA 101, 12792-12797.
22. Kanemaki, M., Kurokawa, Y., Matsu-ura, T., Makino, Y., Masani, A. Okazaki, K., Morishita, T. & Tamura, T. A. (1999) J. Biol. Chem. 274, 22437-22444.
23. Carroll, K., Gomez, C. & Shapiro, L. (2004) Nat. Rev. Mol. Cell. Biol. 5, 55-63.
24. Pazour, G. J. & Witman, G. B. (2003) Curr. Opin. Cell Biol. 15, 105-110.
25. Hsu, D. R. & Meyer, B. J. (1994) Genetics 137, 999-1018.