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Volumn 82, Issue 19, 2008, Pages 9417-9424

Comparative analysis of nearly full-length hepatitis C virus quasispecies from patients experiencing viral breakthrough during antiviral therapy: Clustered mutations in three functional genes, E2, NS2, and NS5a

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID DERIVATIVE; PEGINTERFERON ALPHA2A; RIBAVIRIN;

EID: 52649090810     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.00896-08     Document Type: Article
Times cited : (15)

References (34)
  • 1
    • 0036838224 scopus 로고    scopus 로고
    • Evolution of phenotypic drug susceptibility and viral replication capacity during long-term virologic failure of protease inhibitor therapy in human immunodeficiency virus-infected adults
    • Barbour, J. D., T. Wrin, R. M. Grant, J. N. Martin, M. R. Segal, C. J. Petropoulos, and S. G. Deeks. 2002. Evolution of phenotypic drug susceptibility and viral replication capacity during long-term virologic failure of protease inhibitor therapy in human immunodeficiency virus-infected adults. J. Virol. 76:11104-11112.
    • (2002) J. Virol , vol.76 , pp. 11104-11112
    • Barbour, J.D.1    Wrin, T.2    Grant, R.M.3    Martin, J.N.4    Segal, M.R.5    Petropoulos, C.J.6    Deeks, S.G.7
  • 2
    • 0034623816 scopus 로고    scopus 로고
    • Efficient initiation of HCV RNA replication in cell culture
    • Blight, K. J., A. A. Kolykhalov, and C. M. Rice. 2000. Efficient initiation of HCV RNA replication in cell culture. Science 290:1972-1974.
    • (2000) Science , vol.290 , pp. 1972-1974
    • Blight, K.J.1    Kolykhalov, A.A.2    Rice, C.M.3
  • 4
    • 13944249457 scopus 로고    scopus 로고
    • Quasispecies heterogeneity within the E1/E2 region as a pretreatment variable during pegylated interferon therapy of chronic hepatitis C virus infection
    • Chambers, T. J., X. Fan, D. A. Droll, E. Hembrador, T. Slater, M. W. Nickells, L. B. Dustin, and A. M. Di Bisceglie. 2005. Quasispecies heterogeneity within the E1/E2 region as a pretreatment variable during pegylated interferon therapy of chronic hepatitis C virus infection. J. Virol. 79:3071-3083.
    • (2005) J. Virol , vol.79 , pp. 3071-3083
    • Chambers, T.J.1    Fan, X.2    Droll, D.A.3    Hembrador, E.4    Slater, T.5    Nickells, M.W.6    Dustin, L.B.7    Di Bisceglie, A.M.8
  • 5
    • 1842484005 scopus 로고    scopus 로고
    • Role of minority populations of human immunodeficiency virus type 1 in the evolution of viral resistance to protease inhibitors
    • Charpentier, C., D. E. Dwyer, F. Mammano, D. Lecossier, F. Clavel, and A. J. Hance. 2004. Role of minority populations of human immunodeficiency virus type 1 in the evolution of viral resistance to protease inhibitors. J. Virol. 78:4234-4247.
    • (2004) J. Virol , vol.78 , pp. 4234-4247
    • Charpentier, C.1    Dwyer, D.E.2    Mammano, F.3    Lecossier, D.4    Clavel, F.5    Hance, A.J.6
  • 6
    • 0032583933 scopus 로고    scopus 로고
    • Hepatitis C
    • Di Bisceglie, A. M. 1998. Hepatitis C. Lancet 351:351-355.
    • (1998) Lancet , vol.351 , pp. 351-355
    • Di Bisceglie, A.M.1
  • 7
    • 34447320468 scopus 로고    scopus 로고
    • Quasispecies and its impact on viral hepatitis
    • Domingo, E., and J. Gomez. 2007. Quasispecies and its impact on viral hepatitis. Virus Res. 127:131-150.
    • (2007) Virus Res , vol.127 , pp. 131-150
    • Domingo, E.1    Gomez, J.2
  • 8
    • 0029161576 scopus 로고
    • Comparison of full-length sequences of interferon-sensitive and resistant hepatitis-C virus 1b-sensitivity to interferon is conferred by amino-acid substitutions in the NS5a region
    • Enomoto, N., I. Sakuma, Y. Asahina, M. Kurosaki, T. Murakami, C. Yamamoto, N. Izumi, F. Maruino, and C. Sato. 1995. Comparison of full-length sequences of interferon-sensitive and resistant hepatitis-C virus 1b-sensitivity to interferon is conferred by amino-acid substitutions in the NS5a region. J. Clin. Investig. 96:224-230.
    • (1995) J. Clin. Investig , vol.96 , pp. 224-230
    • Enomoto, N.1    Sakuma, I.2    Asahina, Y.3    Kurosaki, M.4    Murakami, T.5    Yamamoto, C.6    Izumi, N.7    Maruino, F.8    Sato, C.9
  • 10
    • 0034817076 scopus 로고    scopus 로고
    • Differential amplication of hypervariable region 1 of hepatitis C virus by partially mismatched primers
    • Fan, X., A. C. Lyra, D. Tan, Y. Xu, and A. M. Di Bisceglie. 2001. Differential amplication of hypervariable region 1 of hepatitis C virus by partially mismatched primers. Biochem. Biophy. Res. Commun. 284:694-697.
    • (2001) Biochem. Biophy. Res. Commun , vol.284 , pp. 694-697
    • Fan, X.1    Lyra, A.C.2    Tan, D.3    Xu, Y.4    Di Bisceglie, A.M.5
  • 12
    • 33745333404 scopus 로고    scopus 로고
    • Efficient amplification and cloning of near full-length hepatitis C virus genome from clinical samples
    • Fan, X., Y. Xu, and A. M. Di Biceglie. 2006. Efficient amplification and cloning of near full-length hepatitis C virus genome from clinical samples. Biochem. Biophys. Res. Commun. 346:1163-1172.
    • (2006) Biochem. Biophys. Res. Commun , vol.346 , pp. 1163-1172
    • Fan, X.1    Xu, Y.2    Di Biceglie, A.M.3
  • 13
    • 23944462641 scopus 로고    scopus 로고
    • Mechanism of action of interferon and ribavirin in treatment of hepatitis C
    • Feld, J. J., and J. H. Hoofnagle. 2005. Mechanism of action of interferon and ribavirin in treatment of hepatitis C. Nature 436:967-972.
    • (2005) Nature , vol.436 , pp. 967-972
    • Feld, J.J.1    Hoofnagle, J.H.2
  • 14
    • 52649124805 scopus 로고    scopus 로고
    • Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
    • Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.
  • 16
    • 0024234855 scopus 로고
    • CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
    • Higgins, D. G., and P. M. Sharp. 1988. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244.
    • (1988) Gene , vol.73 , pp. 237-244
    • Higgins, D.G.1    Sharp, P.M.2
  • 17
    • 0036196640 scopus 로고    scopus 로고
    • Kalinina, O., H. Norder, S. Mukomolov, and L. O. Magnius. 2002. A natural intergenotypic recombinant of hepatitis C virus identified in St. Petersburg. J. Virol. 76:4034-4043.
    • Kalinina, O., H. Norder, S. Mukomolov, and L. O. Magnius. 2002. A natural intergenotypic recombinant of hepatitis C virus identified in St. Petersburg. J. Virol. 76:4034-4043.
  • 18
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 20
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
    • (2004) Brief. Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 22
    • 33750828434 scopus 로고    scopus 로고
    • Moreno, M. P., D. Casane, L. Lopez, and J. Cristina. 2006. Evidence of recombination in quasispecies populations of a hepatitis C virus patient undergoing anti-viral therapy. Virol. J. 3:87.
    • Moreno, M. P., D. Casane, L. Lopez, and J. Cristina. 2006. Evidence of recombination in quasispecies populations of a hepatitis C virus patient undergoing anti-viral therapy. Virol. J. 3:87.
  • 24
    • 0032804864 scopus 로고    scopus 로고
    • Increased fitness of drug resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy
    • Nijhuis, M., R. Schuurman, D. de Jong, J. Erickson, E. Gustchina, J. Albert, P. Schipper, S. Gulnik, and C. A. B. Boucher. 1999. Increased fitness of drug resistant HIV-1 protease as a result of acquisition of compensatory mutations during suboptimal therapy. AIDS 13:2349-2359.
    • (1999) AIDS , vol.13 , pp. 2349-2359
    • Nijhuis, M.1    Schuurman, R.2    de Jong, D.3    Erickson, J.4    Gustchina, E.5    Albert, J.6    Schipper, P.7    Gulnik, S.8    Boucher, C.A.B.9
  • 25
    • 0026703267 scopus 로고    scopus 로고
    • Okada, S., Y. Akahane, H. Suzuki, H. Okamoto, and S. Mishiro, S. 1992. The degree of variability in the amino terminal region of the E2/NS1 protein of hepatitis C virus correlates with responsiveness to interferon therapy in viremic patients. Hepatology 16:619-624.
    • Okada, S., Y. Akahane, H. Suzuki, H. Okamoto, and S. Mishiro, S. 1992. The degree of variability in the amino terminal region of the E2/NS1 protein of hepatitis C virus correlates with responsiveness to interferon therapy in viremic patients. Hepatology 16:619-624.
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 33748170576 scopus 로고    scopus 로고
    • A phylogenetic method for detecting positive epistasis in gene sequences and its application to RNA virus evolution
    • Shapiro, B., A. Rambaut, O. G. Pybus, and E. C. Holmes. 2006. A phylogenetic method for detecting positive epistasis in gene sequences and its application to RNA virus evolution. Mol. Biol. Evol. 23:1724-1730.
    • (2006) Mol. Biol. Evol , vol.23 , pp. 1724-1730
    • Shapiro, B.1    Rambaut, A.2    Pybus, O.G.3    Holmes, E.C.4
  • 29
    • 0033516497 scopus 로고    scopus 로고
    • Taylor, D. R., S. T. Shi, P. R. Romano, G. N. Barber, and M. M. Lai. 1999. Inhibition of the interferon-inducible protein kinase PKR by HCV E2 protein. Science 285:107-110.
    • Taylor, D. R., S. T. Shi, P. R. Romano, G. N. Barber, and M. M. Lai. 1999. Inhibition of the interferon-inducible protein kinase PKR by HCV E2 protein. Science 285:107-110.
  • 31
    • 33846521154 scopus 로고    scopus 로고
    • Viral determinants of resistance to treatment in patients with hepatitis C
    • Wohnsland, A., W. P. Hofmann, and C. Sarrazin. 2007. Viral determinants of resistance to treatment in patients with hepatitis C. Clin. Microbiol. Rev. 20:23-38.
    • (2007) Clin. Microbiol. Rev , vol.20 , pp. 23-38
    • Wohnsland, A.1    Hofmann, W.P.2    Sarrazin, C.3
  • 33
    • 0141755411 scopus 로고    scopus 로고
    • Identification of a ribavirin-resistant NS5B mutation of hepatitis C virus during ribavirin monotherapy
    • Young, K. C., K. L. Lindsay, K. J. Lee, W. C. Liu, J. W. He, S. L. Milstein, and M. M. Lai. 2003. Identification of a ribavirin-resistant NS5B mutation of hepatitis C virus during ribavirin monotherapy. Hepatology 38:869-878.
    • (2003) Hepatology , vol.38 , pp. 869-878
    • Young, K.C.1    Lindsay, K.L.2    Lee, K.J.3    Liu, W.C.4    He, J.W.5    Milstein, S.L.6    Lai, M.M.7
  • 34
    • 33947505046 scopus 로고    scopus 로고
    • Separation of near full-length hepatitis C virus quasispecies variants from a complex population
    • Zhou, D., X. Fan, D. Tan, Y. Xu, J. E. Tavis, and A. M. Di Bisceglie. 2007. Separation of near full-length hepatitis C virus quasispecies variants from a complex population. J. Virol. Methods 141:220-224.
    • (2007) J. Virol. Methods , vol.141 , pp. 220-224
    • Zhou, D.1    Fan, X.2    Tan, D.3    Xu, Y.4    Tavis, J.E.5    Di Bisceglie, A.M.6


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