Archived unfrozen neonatal blood spots are amenable to quantitative gene expression analysis

Neonatology

Volumn 95, Issue 3, 2009, Pages 210-216

  Haak, Peterson T ^a,b,c   Busik, Julia V ^d   Kort, Eric J ^a   Tikhonenko, Maria ^d   Paneth, Nigel ^b   Resau, James H ^a  

^a VAN ANDEL RESEARCH INSTITUTE   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c MICHIGAN STATE UNIVERSITY   (United States)

^d MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Blood spot; Guthrie; Microarray; Neonatal screening; QPCR; Real time PCR; RNA

Indexed keywords

MESSENGER RNA;

ARTICLE; BLOOD SAMPLING; BLOOD STORAGE; GENE AMPLIFICATION; GENE EXPRESSION; GENE REPLICATION; HOUSEKEEPING GENE; HUMAN; MICROARRAY ANALYSIS; NEWBORN; NEWBORN SCREENING; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; QUANTITATIVE GENETICS; REAL TIME POLYMERASE CHAIN REACTION; RNA ISOLATION; RNA TRANSCRIPTION;

BLOOD SPECIMEN COLLECTION; GENE EXPRESSION PROFILING; HUMANS; INFANT, NEWBORN; NEONATAL SCREENING; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; RNA, MESSENGER; TIME FACTORS;

EID: 51749093547     PISSN: 16617800     EISSN: 16617819     Source Type: Journal    
DOI: 10.1159/000155652     Document Type: Article

References (39)

1. Raghuveer TS, Garg U, Graf WD: Inborn errors of metabolism in infancy and early childhood: an update. Am Fam Physician 2006; 73: 1981-1990.
2. Green NS, Pass KA: Neonatal screening by DNA microarray: spots and chips. Nat Rev Genet 2005; 6: 147-151.
3. Therrell BL, Johnson A, Williams D: Status of newborn screening programs in the United States. Pediatrics 2006; 117:S212-S252.
4. Miller AA, Sharrock KC, McDade TW: Measurement of leptin in dried blood spot samples. Am J Hum Biol 2006; 18: 857-860.
5. Alvarez-Muñoz MT, Zaragoza-Rodríguez S, Rojas-Montes O, Palacios-Saucedo G, Váz - quez-Rosales G, Gómez-Delgado A, Torres J, Muñoz O: High correlation of human immunodeficiency virus type-1 viral load measured in dried-blood spot samples and in plasma under different storage conditions. Arch Med Res 2005; 36: 382-386.
6. Sherman GG, Stevens G, Jones SA, Horsfield P, Stevens WS: Dried blood spots improve access to HIV diagnosis and care for infants in low-resource settings. J Acquir Immune Defic Syndr 2005; 38: 615-617.
7. Lewensohn-Fuchs I, Osterwall P, Forsgren M, Malm G: Detection of herpes simplex virus DNA in dried blood spots making a retrospective diagnosis possible. J Clin Virol 2003; 26: 39-48.
8. Solmone M, Girardi E, Costa F, Pucillo L, Ippolito G, Capobianchi MR: Simple and reliable method for detection and genotyping of hepatitis C virus RNA in dried blood spots stored at room temperature. J Clin Microbiol 2002; 40: 3512-3514.
9. McCabe KM, Zhang YH, Huang BL, Wagar EA, McCabe ER: Bacterial species identification after DNA amplification with a universal primer pair. Mol Genet Metab 1999; 66: 205-211.
10. Rubin EM, Andrews KA, Kan YW: Newborn screening by DNA analysis of dried blood spots. Hum Genet 1989; 82: 134-136.
11. Carducci C, Ellul L, Antonozzi I, Pontecorvi A: DNA elution and amplification by polymerase chain reaction from dried blood spots. Biotechniques 1992; 13: 735-737.
12. Mackey K, Steinkamp A, Chomczynski P: DNA extraction from small blood volumes and the processing of cellulose blood cards for use in polymerase chain reaction. Mol Biotechnol 1998; 9: 1-5.
13. Sorensen KM, Jespersgaard C, Vuust J, Hougaard D, Norgaard-Pedersen B, Andersen PS: Whole genome amplification on DNA from filter paper blood spot samples: an evaluation of selected systems. Genet Test 2007;11: 65-71.
14. Mitterer G, Bodamer O, Harwanegg C, Maurer W, Mueller MW, Schmidt WM: Microarray-based detection of mannose-binding lectin 2 (MBL2) polymorphisms in a routine clinical setting. Genet Test 2005; 9: 6-13.
15. Chow JC, Chen DJ, Lin CN, Chiu CY, Huang CB, Chiu PC, Lin CH, Lin SJ, Tzeng CC: Feasibility of blood spot PCR in large-scale screening of fragile X syndrome in southern Taiwan. J Formos Med Assoc 2003; 102: 12-16.
16. Dobrowolski SF, Angeletti J, Banas RA, Naylor EW: Real-time PCR assays to detect common mutations in the biotinidase gene and application of mutational analysis to newborn screening for biotinidase deficiency. Mol Genet Metab 2003; 78: 100-107.
17. Majumdar R, Rehana Z, Al Jumah M, Fetaini N: Spinal muscular atrophy carrier screening by multiplex polymerase chain reaction using dried blood spot on filter paper. Ann Hum Genet 2005; 69: 216-221.
18. Olshan AF, Shaw GM, Millikan RC, Laurent C, Finnell RH: Polymorphisms in DNA repair genes as risk factors for spina bifida and orofacial clefts. Am J Med Genet A 2005; 135:268-273.
19. Skinner JR, Chong B, Fawkner M, Webster DR, Hegde M: Use of the newborn screening card to define cause of death in a 12-year-old diagnosed with epilepsy. J Paediatr Child Health 2004; 40: 651-653.
20. Taub JW, Konrad MA, Ge Y, Naber JM, Scott JS, Matherly LH, Ravindranath Y: High frequency of leukemic clones in newborn screening blood samples of children with Bprecursor acute lymphoblastic leukemia. Blood 2002; 99: 2992-2996.
21. Gale KB, Ford AM, Repp R, Borkhardt A, Keller C, Eden OB, Greaves MF: Backtracking leukemia to birth: identification of clonotypic gene fusion sequences in neonatal blood spots. Proc Natl Acad Sci USA 1997; 94:13950-13954.
22. Yagi T, Hibi S, Tabata Y, Kuriyama K, Teramura T, Hashida T, Shimizu Y, Takimoto T, Todo S, Sawada T, et al: Detection of clonotypic IGH and TCR rearrangements in the neonatal blood spots of infants and children with B-cell precursor acute lymphoblastic leukemia. Blood 2000; 96: 264-268.
23. Wiemels JL, Xiao Z, Buffler PA, Maia AT, Ma X, Dicks BM, Smith MT, Zhang L, Feusner J, Wiencke J, et al: In utero origin of t(8; 21) AML1-ETO translocations in childhood acute myeloid leukemia. Blood 2002; 99:3801-3805.
24. Matsubara Y, Ikeda H, Endo H, Narisawa K: Dried blood spot on filter paper as a source of mRNA. Nucleic Acids Res 1992; 20: 1998.
25. Karlsson H, Guthenberg C, von Döbeln U, Kristenssson K: Extraction of RNA from dried blood on filter papers after long-term storage. Clin Chem 2003; 49: 979-981.
26. Suttorp M, Ritgen M, von Neuhoff N, Schoch R, Schmitz N: Blood on filter paper as a readily available source of bcr-abl rearranged mRNA. Blood 1997; 90: 1713-1715.
27. Pai JT, Tsai SF, Horng CJ, Chiu PC, Cheng MY, Hsiao KJ, Wuu KD: Absence of FMR-1 gene expression can be detected with RNA extracted from dried blood specimens. Hum Genet 1994; 93: 488-493.
28. Maeno Y, Nakazawa S, Nagashima S, Sasaki J, Higo KM, Taniguchi K: Utility of the dried blood on filter paper as a source of cytokine mRNA for the analysis of immunoreactions in Plasmodium yoelii infection. Acta Trop 2003; 87: 295-300.
29. Whitwam T, Vanbrocklin MW, Russo ME, Haak PT, Bilgili D, Resau JH, Koo HM, Holmen SL: Differential oncogenic potential of activated RAS isoforms in melanocytes. Oncogene 2007; 26: 4563-4570.
30. Gao C, Furge K, Koeman J, Dykema K, Su Y, Cutler ML, Werts A, Haak P, Vande Woude GF: Chromosome instability, chromosome transcriptome, and clonal evolution of tumor cell populations. Proc Natl Acad Sci USA 2007; 104: 8995-9000.
31. Smyth GK, Speed T: Normalization of cDNA microarray data. Methods 2003; 31: 265-273.
32. Ihaka R, Gentleman R: A language for data analysis and graphics. J Comput Graph Statist 1996; 5: 299-314.
33. Applied Biosystems: User bulletin #2: ABI PRISM 7700 Sequence Detection System, 2001.
34. Hembruff SL, Villeneuve DJ, Parissenti AM: The optimization of quantitative reverse transcription PCR for verification of cDNA microarray data. Anal Biochem 2005; 345: 237-249.
35. Morey JS, Ryan JC, Van Dolah FM: Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biol Proced Online 2006;8: 175-193.
36. Ponchel F, Toomes C, Bransfield K, Leong FT, Douglas SH, Field SL, Bell SM, Combaret V, Puisieux A, Mighell AJ, et al: Real-time PCR based on SYBR-Green I fluorescence: an alternative to the TaqMan assay for a relative quantification of gene rearrangements, gene amplifications and micro gene deletions. BMC Biotechnol 2003; 3: 18.
37. al-Naama MM, al-Naama LM, al-Sadoon TA: Glucose-6-phosphate dehydrogenase, hexokinase and pyruvate kinase activities in erythrocytes of neonates and adults in Basrah. Ann Trop Paediatr 1994; 14: 195-200.
38. Ugarova TP, Yakubenko VP: Recognition of fibrinogen by leukocyte integrins. Ann NY Acad Sci 2001; 936: 368-385.
39. Field LA, Jordan RM, Hadix JA, Dunn MA, Shriver CD, Ellsworth RE, Ellsworth DL: Functional identity of genes detectable in expression profiling assays following globin mRNA reduction of peripheral blood samples. Clin Biochem 2007; 40: 499-502.