ATG-anchored AFLP (ATG-AFLP) analysis in cotton

Plant Cell Reports

Volumn 27, Issue 10, 2008, Pages 1645-1653

  Lu, Yingzhi ^a   Curtiss, Jessica ^a   Miranda, Danielle ^a   Hughs, Ed ^b   Zhang, Jinfa ^a  

^a NEW MEXICO STATE UNIVERSITY   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

AFLP; ATG AFLP; G. barbadense; Gossypium hirsutum

Indexed keywords

RESTRICTION ENDONUCLEASE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BIOLOGY; CHROMOSOME MAP; CHROMOSOME SEGREGATION; CLUSTER ANALYSIS; COTTON; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; INBREEDING; METABOLISM; METHODOLOGY; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; POLYPLOIDY; SEQUENCE HOMOLOGY;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BASE SEQUENCE; CHROMOSOME MAPPING; CHROMOSOME SEGREGATION; CLONING, MOLECULAR; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DNA RESTRICTION ENZYMES; EXPRESSED SEQUENCE TAGS; GENETIC MARKERS; GENOTYPE; GOSSYPIUM; INBREEDING; POLYMORPHISM, GENETIC; POLYPLOIDY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

ARABIDOPSIS; GOSSYPIUM HIRSUTUM; PIMA;

EID: 51749088123     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-008-0568-z     Document Type: Article

References (37)

1. AM Abdalla OUK Reddy KM El-Zik AE Pepper 2001 Genetic diversity and relationships of diploid and tetraploid cottons revealed using AFLP Theor Appl Genet 103 547 554
2. Altaf MK, Zhang JF, Stewart JM, Cantrell RG (1998) Integrated molecular map based on a trispecific F2 population of cotton. Proc Beltwide Cotton Conf, Natl Cotton Council Am, Memphis, pp 491-492
3. S Bensch M Akesson 2005 Ten years of AFLP in ecology and evolution: why so few animals? Mol Ecol 14 2899 2914
4. J Bikandi R San Millán A Rementeria J Garaizar 2004 In silico analysis of complete bacterial genomes: PCR, AFLP-PCR, and endonuclease restriction Bioinformatics 20 798 799
5. CL Brubaker AH Brown 2003 The use of multiple alien chromosome addition aneuploids facilitates genetic linkage mapping of the Gossypium G genome Genome 46 774 791
6. RG Cantrell DD Davis 2000 Registration of NM24016, an interspecific-derived cotton genetic stock Crop Sci 40 1208
7. RG Cantrell CL Roberts C Waddell 2000 Registration of 'Acala 1517-99'cotton Crop Sci 40 1200 1201
8. Childs KL, Hamilton JP, Zhu W, Ly E, Cheung F, Wu H, Rabinowicz PD, Town CD, Buell CR, Chan AP (2007) The TIGR plant transcript assemblies database. Nucleic Acids Res 35:D846-D851
9. Endrizzi JE, Turcotte EL, Kohel RJ (1984) Qualitative genetics, cytology, and cytogenetics. In: Kohel RJ, Lewis CF (eds) Cotton. American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. Madison, Wisconsin pp 82-129, 605 p
10. V Hampl A Pavlícek J Flegr 2001 Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with a freeware program FreeTree: application to trichomonad parasites Int J Syst Evol Microbiol 51 731 735
11. J Hu BA Vick 2003 TRAP (target region amplification polymorphism), a novel marker technique for plant genotyping Plant Mol Biol Rep 21 289 294
12. MJ Iqbal OUK Reddy KM El-Zik AE Pepper 2001 A genetic bottleneck in the 'evolution under domestication' of upland cotton Gossypium hirsutum L examined using DNA fingerprinting. Theor Appl Genet 103 547 554
13. RJ Kohel TR Richmond CF Lewis 1970 Texas Marker-1. Description of a genetic standard for Gossypium hirsutum L. Crop Sci 10 670 671
14. JM Lacape TB Nguyen S Thibivilliers B Bojinov B Courtois RG Cantrell B Burr B Hau 2003 A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutum x Gossypium barbadense backcross population Genome 46 612 626
15. JM Lacape TB Nguyen B Courtois JL Belot M Giband JP Gourlot G Gawryziak S Roques B Hau 2005 QTL analysis of cotton fiber quality using multiple Gossypium hirsutum x Gossypium barbadense backcross generations Crop Sci 45 123 140
16. ES Lander P Green J Abrahamson A Barlow MJ Daly SE Lincoln L Newburg 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations Genomics 1 174 181
17. G Li CF Quiros 2001 Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica Theor Appl Genet 103 455 461
18. B Liu CL Brubaker G Mergeai RC Cronn JF Wendel 2001 Polyploid formation in cotton is not accompanied by rapid genomic changes Genome 44 321 330
19. M Mei NH Syed W Gao PM Thaxton CW Smith DM Stelly ZJ Chen 2004 Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium) Theor Appl Genet 108 280 291
20. HM Meudt AC Clarke 2007 Almost forgotten or latest practice? AFLP applications, analyses and advances Trends Plant Sci 12 106 117
21. C Niu DJ Hinchliffe RG Cantrell C Wang PA Roberts JF Zhang 2007 Identification of molecular markers associated with root-knot nematode resistance in Upland cotton Crop Sci 47 951 960
22. KC Park NH Kim YS Cho KH Kang JK Lee NS Kim 2003 Genetic variations of AA genome Oryza species measured by MITE-AFLP Theor Appl Genet 107 203 209
23. M Pillay GO Myers 1999 Genetic diversity in cotton assessed by variation in ribosomal RNA genes and AFLP markers Crop Sci 39 1881 1886
24. Rombauts S, Van de Peer Y, Rouz P (2002/3) AFLPinSilico, simulating AFLP fingerprints. Bioinformatics 19:776-777
25. JK Roy HS Balyan M Prasad PK Gupta 2002 Use of SAMPL for a study of DNA polymorphism, genetic diversity and possible gene tagging in bread wheat Theor Appl Genet 104 465 472
26. P Vos R Hogers M Bleeker M Reijans T van de Lee M Hornes A Frijters J Pot J Peleman M Kuiper M Zabeau 1995 AFLP: a new technique for DNA fingerprinting Nucleic Acids Res 23 4407 4414
27. M Vuylsteke JD Peleman MJ van Eijk 2007 AFLP technology for DNA fingerprinting Nat Protoc 2 1387 1398
28. M Vuylsteke JD Peleman MJ van Eijk 2007 AFLP-based transcript profiling (cDNA-AFLP) for genome-wide expression analysis Nat Protoc 2 1399 1413
29. 2 fertility restorer gene in cotton Genome 50 818 824
30. Weising K, Nybom H, Wolff K, Kahl G (2005) DNA fingerprinting in plants: principles, methods, and applications, 2nd edn. CRC Press, Boca Raton, FL
31. OT Westengen Z Huaman M Heun 2005 Genetic diversity and geographic pattern in early South American cotton domestication Theor Appl Genet 110 392 402
32. AWG Van der Wurff YL Chan NM van Straalen J Schouten 2000 TE-AFLP: combining rapidity and robustness in DNA fingerprinting Nucleic Acids Res 28 e105
33. Z Yue W Wang J Kong J Dai 2005 Isolation, cloning, and sequencing of AFLP markers related to disease resistance traits in Fennerospenaeus chinensis Chin J Oceanol Limnol 23 442 447
34. JF Zhang JM Stewart 2000 Economical and rapid method for extracting cotton genomic DNA J Cotton Sci 4 193 201
35. JF Zhang YZ Lu SX Yu 2005 Cleaved AFLP (cAFLP), a modified amplified fragment length polymorphism analysis for cotton Theor Appl Genet 111 1385 1395
36. Zhang JF, Lu Y, Percy RG, Ulloa M, Becelaere G, Chee P, Cantrell RG (2005b) A molecular linkage map and quantitative trait locus analysis based on a recombinant inbred line population of cotton. Proc Beltwide Cotton Conf, Natl Cotton Council Am, Memphis, p 899
37. JF Zhang YL Yuan C Niu DJ Hinchliffe Y Lu S Yu RG Percy RG Cantrell 2007 AFLP-RGA markers in comparison with RGA and AFLP in cultivated tetraploid cotton Crop Sci 47 180 187