Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium)

Theoretical and Applied Genetics

Volumn 108, Issue 2, 2004, Pages 280-291

  Mei, M ^a   Syed, N H ^a,b   Gao, W ^a   Thaxton, P M ^a   Smith, C W ^a   Stelly, D M ^a   Chen, Z J ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

^b UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; BIOMARKERS; COTTON FIBERS; CULTIVATION;

QUANTITATIVE TRAIT LOCI (QTL);

GENETIC ENGINEERING;

PLANT DNA;

ARTICLE; CHROMOSOME MAP; CHROMOSOME SEGREGATION; COTTON; GENETIC LINKAGE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; GENOME; GROWTH, DEVELOPMENT AND AGING; PHENOTYPE; PLANT CHROMOSOME; POLYPLOIDY; QUANTITATIVE TRAIT LOCUS; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

CHROMOSOME MAPPING; CHROMOSOME SEGREGATION; CHROMOSOMES, PLANT; DNA, PLANT; GENETIC MARKERS; GENOME, PLANT; GOSSYPIUM; LINKAGE (GENETICS); PHENOTYPE; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYPLOIDY; QUANTITATIVE TRAIT LOCI; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

EMBRYOPHYTA; GOSSYPIUM; GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM;

EID: 0842287596     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-003-1433-7     Document Type: Article

References (58)

1. Applequist WL, Cronn R, Wendel JF (2001) Comparative development of fiber in wild and cultivated cotton. Evol Dev 3:3-17
2. Basten CJ, Weir BS, Zeng ZB (2001) QTL CARTOGRAPHER version 1.15, North Carolina State University, Raleigh, N.C.
3. Beasley JO (1940) The origin of American tetraploid Gossypium species. Am Nat 74:285-286
4. Brown MS (1980) Identification of the chromosomes of Gossypium hirsutum L. by means of translocations. J Hered 71:266-274
5. Brubaker CL, Paterson AH, Wendel JF (1999) Comparative genetic mapping of allotetraploid cotton and its diploid progenitors. Genome 42:184-203
6. Castiglioni P, Ajmone-Marsan P, Wijk R (1999) AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution. Theor Appl Genet 99:425-431
7. Chen Z, Devey M, Tuleen NA, Hart GE (1994) Use of recombinant substitution lines in construction of RFLP-based genetic maps of chromosomes 6A and 6B of tetraploid wheat (Triticum turgidum L.). Theor Appl Genet 89:703-712
8. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
9. Doerge RW, Craig BA (2000) Model selection for quantitative trait locus analysis in polyploids. Proc Natl Acad Sci USA 97:7951-7956
10. Endrizzi JE, Turcotte EL, Kohel RJ (1984) Qualitative genetics, cytology and cytogenetics. In: Kohel RJ, Lewis DF (eds) Agronomy, vol 24. Cotton. American Society of Agronomy, Madison, Wis., pp 59-80
11. Feldman M, Liu B, Segal G, Abbo S, Levy AA, Vega JM (1997) Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics 147:1381-1387
12. Geever RF, Katterman F, Endrizzi JE (1989) DNA hybridization analyses of a Gossypium allotetraploid and two closely related diploid species. Theor Appl Genet 77:553-559
13. Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69:315-324
14. Hyne V, Kearsey MJ, Pike DJ, Snape JW (1995) QTL analysis: unreliability and bias in estimation procedures. Mol Breed 1:273-282
15. Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447-1485
16. Jiang C, Wright RJ, El-Zik KM, Paterson AH (1998) Polyploid formation created unique avenues for response to selection in Gossypium. Proc Natl Acad Sci USA 95:4419-4424
17. Kearsey M, Farquhar AGL (1998) QTL analysis in plants; where are we now? Heredity 80:137-142
18. Kearsey MJ, Hyne V (1994) QTL analysis: A simple "marker regression approach". Theor Appl Genet 89:698-702
19. Kimber G (1961) Basis of the diploid-like meiotic behavior of polyploid cotton. Nature 191:98-99
20. Klein PE, Klein RR, Cartinhour SW, Ulanch PE, Dong J, Obert JA, Morishige DT, Schlueter SD, Childs KL, Ale M, Mullet JE (2000) A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map. Genome Res 10:789-807
21. Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B (2003) A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutumxGossypium barbadense backcross population. Genome 46:612-626
22. Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185-199
23. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
24. Leitch IL, Bennett MD (1997) Polyploidy in angiosperms. Trends Plant Sci 2:470-476
25. Lincoln S, Daly M, Lander E (1992) Constructing genetic maps with MAPMAKER/EXP3.0. Whitehead Institute, Cambridge, Mass.
26. Liu B, Brubaker G, Cronn RC, Wendel JF (2001) Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 44:321-330
27. Liu S, Saha S, Stelly D, Burr B, Cantrell RG (2000) Chromosomal assignment of microsatellite loci in cotton. J Hered 91:326-332
28. Livingstone KD, Churchill G, Jahn MK (2000) Linkage mapping in populations with karyotypic rearrangements. J Hered 91:423-428
29. Masterson J (1994) Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 264:421-424
30. McGregor CE, Lambert CA, Greyling MM, Louw JH, Warnich L (2000) A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solanum tuberosum L.). Euphytica 113:135-144
31. Moser EB, Saxton AM, Geaghan JP (1988) Biological applications of the SAS system: an overview. Comput Appl Biosci 4:233-238
32. Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA (2003) Understanding mechanisms of novel gene expression in polyploids. Trends Genet 19:141-147
33. Ozkan H, Levy AA, Feldman M (2001) Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 13:1735-1747
34. Paterson AH, Brubaker CL, Wendel JF (1993) A rapid method for extraction of cotton (Gossypium spp.) genome DNA suitable for RFLP or PCR analysis. Plant Mol Biol Rep 11:122-127
35. Percival AE, Wendel JF, Stewart JM (1999) Taxonomy and germplasm resources. In: Smith CW, Cothren JT (eds) Cotton: origin, history, technology, and production. John Wiley & Sons, New York, pp 33-63
36. Reddy OUK, Pepper AE, Abdurakhmonov I, Saha S, Jenkins JN, Brooks T, Bolek Y, El-Zik KM (2001) New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. J Cotton Sci 5:103-113
37. Reinisch AJ, Dong JM, Brubaker CL, Stelly DM, Wendel JF, Paterson AH (1994) A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics 138:829-847
38. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81:8014-8018
39. Saliba-Colombani V, Causse M, Gervais L, Philouze J (2000) Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome. Genome 43:29-40
40. Sebastian RL, Howell EC, King GJ, Marshall DF, Kearsey MJ (2000) An integrated AFLP and RFLP Brassica oleracea linkage map from two morphologically distinct doubled-haploid mapping populations. Theor Appl Genet 100:75-81
41. Shappley ZW, Jenkins JN, Meredith WR, McCarty JC Jr (1998) An RFLP linkage map of upland cotton, Gossypium hirsutum L. Theor Appl Genet 97:756-761
42. Song K, Lu P, Tang K, Osborn TC (1995) Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Natl Acad Sci USA 92:7719-7723
43. Stebbins GL (1940) Types of polyploids: their classification and significance. Adv Genet 1:403-429
44. Stebbins GL (1950) Variation and evolution in plants. Columbia University Press, New York
45. Stebbins GL (1971) Chromosomal evolution in higher plants. Edward Arnold, London
46. Stelly DM (1993) Interfacing cytogenetics with the cotton genome mapping effort. In: Herber DJ, Richter DA (eds) Beltwide Cotton Conf. National Cotton Council of America, Memphis, pp 1545-1550
47. Tinker NA, Mather DE (1995) MQTL: software for simplified composite interval mapping of QTL in multiple environments. J Quant Loci ftp://gnome.agrenv.mcgill.ca/software/MQTL
48. Ulloa M, Meredith R Jr (2000) Genetic linkage map and QTL analysis of agronomic and fiber quality traits in an interspecific population. J Cotton Sci 4:161-170
49. (2.3) populations and a joinmap of Gossypium hirsutum L. Theor Appl Genet 104:200-208
50. Vos P (1998) AFLP fingerprinting of Arabidopsis. Methods Mol Biol 82:147-155
51. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Homes M, Frijters A, Pot J, Peleman J, Kuiper M, et al. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
52. Waugh R, Bonar N, Baird E, Thomas B, Graner A, Hayes P, Powell W (1997) Homology of AFLP products in three mapping populations of barley. Mol Gen Genet 255:311-321
53. Wendel JF (2000) Genome evolution in polyploids. Plant Mol Biol 42:225-249
54. Wendel JF, Schnabel A, Seelanan T (1995) An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Mol Phylogenet Evol 4:298-313
55. Wight CP, Tinker NA, Kianian SF, Sorrells ME, O'Donoughue LS, Hoffman DL, Groh S, Scoles GJ, Li CD, Webster FH, Phillips RL, Rines HW, Livingston SM, Armstrong KC, Fedak G, Molnar SJ (2003) A molecular marker map in 'Kanota' x 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework. Genome 46:28-47
56. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468
57. Zhang J, Guo W, Zhang T (2002) Molecular linkage map of allotetraploid cotton (Gossypium hirsutum L. X Gossypium barbadense L.) with a haploid population. Theor Appl Genet 105:1166-1174
58. Zhao XP, Si Y, Hanson RE, Crane CF, Price HJ, Stelly DM, Wendel JF, Paterson AH (1998) Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton. Genome Res 5:479-492