Cleaved AFLP (cAFLP), a modified amplified fragment length polymorphism analysis for cotton

Theoretical and Applied Genetics

Volumn 111, Issue 7, 2005, Pages 1385-1395

  Zhang, Jinfa ^a   Lu, Yingzhi ^a   Yu, Shuxun ^b  

^a NEW MEXICO STATE UNIVERSITY   (United States)

^b China Cotton Research Institute   (China)

Author keywords

AFLP; Cleaved AFLP; Cultivated tetraploid; Genetic similarity; Gossypium spp

Indexed keywords

CULTIVATION; GENES; GENETIC ENGINEERING; PLANTS (BOTANY);

AFLP; CLEAVED AFLP (CAFLP); CULTIVATED TETRAPLOID; GENETIC SIMILARITY; GOSSYPIUM SPP;

CROPS;

RESTRICTION ENDONUCLEASE;

ARTICLE; BREEDING; CLUSTER ANALYSIS; COMPARATIVE STUDY; COTTON; GENETIC MARKER; GENETICS; METABOLISM; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SPECIES DIFFERENCE;

BREEDING; CLUSTER ANALYSIS; DNA RESTRICTION ENZYMES; GENETIC MARKERS; GOSSYPIUM; NUCLEIC ACID AMPLIFICATION TECHNIQUES; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SPECIES SPECIFICITY;

COTTON; CULTIVATION; GENES; GENETIC ENGINEERING; PLANTS;

GOSSYPIUM; GOSSYPIUM BARBADENSE; GOSSYPIUM HIRSUTUM;

EID: 27744560751     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-0070-8     Document Type: Article

References (51)

1. Abdalla AM, Reddy OUK, El-Zik KM, Pepper AE (2001) Genetic diversity and relationships of diploid and tetraploid cottons revealed using AFLP. Theor Appl Genet 103:547-554
2. Altaf MK, Zhang JF, Stewart JM, Cantrell RG (1998) Integrated molecular map based on a trispecific F2 population of cotton. In: Proceedings of the Beltwide Cotton Conference, San Diego, CA. 5-9 January 1998. National Cotton Council of America, Memphis, TN, USA, pp 491-492
3. Bourland FM (1996) Registration of 'H1330' cotton. Crop Sci 36:813
4. Brubaker CL, Wendel JF (1994) Reevaluating the origin of domesticated cotton (Gossypium hirsutum Malvaceae) using nuclear restriction fragment length polymorphisms (RFLP). Am J Bot 81:1309-1326
5. Brubaker CL, Brown AH (2003) The use of multiple alien chromosome addition aneuploids facilitates genetic linkage mapping of the Gossypium G genome. Genome 46:774-791
6. Cantrell RG, Davis DD (2000) Registration of NM24016, an interspecific-derived cotton genetic stock. Crop Sci 40:1208
7. Cantrell RG, Roberts CL, Waddell C (2000) Registration of 'Acala 1517-99' cotton. Crop Sci 40:1200-1201
8. Chee PW, Rong J, Williams-Coplin D, Schulze SR, Paterson AH (2004) EST derived PCR-based markers for functional gene homologues in cotton. Genome 47:449-462
9. 2 performance. Crop Sci 42:1841-1847
10. Han ZG, Guo WZ, Song XL, Zhang TZ (2004) Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboreum in allotetraploid cotton. Mol Genet Genomics 272:308-327
11. Hinchliffe DJ, Lu Y, Potenza C, Segupta-Gopalan C, Cantrell RG, Zhang JF (2005) Resistance gene analogue markers are mapped to homeologous chromosomes in cultivated tetraploid cotton. Theor Appl Genet 110:1074-1085
12. Hutchinson JB, Silow RA, Stephens SG (1947) The evolution of Gossypium and diiferentiation of the cultivated cotton, 1st edn. Oxford University Press, London
13. Iqbal MJ, Reddy OUK, El-Zik KM, Pepper AE (2001) A genetic bottleneck in the 'evolution under domestication' of upland cotton Gossypium hirsutum L. examined using DNA finger-printing. Theor Appl Genet 103:547-554
14. Kohel RJ, Richmond TR, Lewis CF (1970) Texas Marker-1. Description of a genetic standard for Gossypium hirsutum L. Crop Sci 10:670-671
15. Lacape JM, Nguyen TB, Thibivilliers S, Bojinov B, Courtois B, Cantrell RG, Burr B, Hau B (2003) A combined RFLP-SSR-AFLP map of tetraploid cotton based on a Gossypium hirsutum x Gossypium barbadense backcross population. Genome 46:612-626
16. Lacape JM, Lacape, Nguyen TB, Courtois B, Belot JL, Giband M, Gourlot JP, Gawryziak G, Roques S, Hau B (2005) QTL Analysis of cotton fiber quality using multiple Gossypium hirsutum x Gossypium barbadense backcross generations. Crop Sci 45:123-140
17. Lewis H (2001) A review of yield and fiber quality trends and components in American upland cotton. In: Proceedings of the Beltwide Cotton Conference, January 9-13, Anaheim, CA. National Cotton Council of America, Memphis, TN, USA, pp 1447-1453
18. Liu B, Brubaker CL, Mergeai G, Cronn RC, Wendel JF (2001) Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 44:321-330
19. Lu HJ, Myers O (2002) Genetic relationships and discrimination of ten influential Upland cotton varieties using RAPD markers. Theor Appl Genet 105:325-331
20. Lu Y, Curtiss J, Percy RG, Cantrell RG, Zhang JF (2005) Discovery of single nucleotide polymorphism in selected fiber genes in cultivated tetraploid cotton. (2005). In: Proceedings of the Beltwide Cotton Conference, New Orleans, LA, USA, 5-9 January 2005. National Cotton Council of America, Memphis, TN, USA
21. May OL, Bowman DT, Calhoun DS (1995) Genetic diversity of U.S. Upland cotton cultivars released between 1980 and 1990. Crop Sci 35:1570-1574
22. Mei M, Syed NH, Gao W, Thaxton PM, Smith CW, Stelly DM, Chen ZJ (2004) Genetic mapping and QTL analysis of fiber-related traits in cotton (Gossypium). Theor Appl Genet 108:280-291
23. Meredith WR Jr (2000) Cotton yield progress - why has it reached a plateau. Better Crops 84:6-9
24. Multani DS, Lyon BR (1995) Genetic fingerprinting of Australian cotton cultivars with RAPD markers. Genome 38:1005-1010
25. Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM (2004) Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor Appl Genet 109:167-175
26. Park KC, Kim NH, Cho YS, Kang KH, Lee JK, Kim NS (2003) Genetic variations of AA genome Oryza species measured by MITE-AFLP. Theor Appl Genet 107:203-209
27. Paterson AH, Saranga Y, Menz M, Jiang CX, Wright RJ (2003) QTL Analysis of genotype x environment interactions affecting cotton fiber quality. Theor Appl Genet 106:384-396
28. Percy RG, Wendel JF (1990) Allozyme evidence for the origin and diversification of Gossypium barbadense L. Theor Appl Genet 79:529-542
29. Pilley M, Myers GO (1999) Genetic diversity in cotton assessed by variation in ribosomal RNA genes and AFLP markers. Crop Sci 39:1881-1886
30. Rahman M, Hussain D, Zafar Y (2002) Estimation of genetic divergence among elite cotton cultivars-genotypes by DNA fingerprinting technology. Crop Sci 42:2137-2144
31. Reinisch AJ, Dong JM, Brubaker CL, Stelly DM, Wendel JF, Paterson AH (1994) A detailed RFLP map of cotton, Gossypium hirsutum x Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics 138:829-847
32. Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH (2004) A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics 166:389-417
33. Roy JK, Balyan HS, Prasad M, Gupta PK (2002) Use of SAMPL for a study of DNA polymorphism, genetic diversity and possible gene tagging in bread wheat. Theor Appl Genet 104:465-472
34. Saranga Y, Menz M, Jiang C, Wright R, Yakir D, Paterson AH (2002) Genetic dissection of genotype x environment interactions conferring adaptation of cotton to arid conditions. Genome Res 11:1988-1995
35. Shappley ZW, Jenkins JN, Meredith Jr WR, McCarty JC Jr (1998) An RFLP linkage map of Upland Cotton, Gossypium hirsutum L. Theor Appl Genet 97:756-761
36. Smith CW, Cothern JT (1999) Cotton. Wiley, New York
37. Soriano JM, Vilanova S, Romero C, Llacer G, Badenes ML (2005) Characterization and mapping of NBS-LRR resistance gene analogs in apricot (Prunus armeniaca L.). Theor Appl Genet [Epub ahead of print]
38. Tatineni V, Cantrell RG, Davis DD (1996) Genetic diversity in elite cotton germplasm determined by morphological characteristics and RAPDs. Crop Sci 36:186-192
39. Ulloa M, Meredith WR Jr, Shappley ZW, Kahler AL (2002) RFLP genetic linkage maps from four F(2.3) populations and a join-map of Gossypium hirsutum L. Theor Appl Genet 104:200-208
40. Ulloa M, Saha S, Jenkins JN, Meredith WR Jr, McCarty JC Jr, Stelly DM (2005) Chromosomal assignment of RFLP linkage groups harboring important QTLs on an intraspecific cotton (Gossypium hirsutum L.) joinmap. J Hered 96:132-144
41. Van der Wurff AWG, Chan YL, van Straalen NM, Schouten J (2000) TE-AFLP: combining rapidity and robustness in DNA fingerprinting. Nucleic Acids Res 28:e105
42. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
43. Wendel JF, Cronn RC (2003) Polyploidy and the evolutionary history of cotton. Adv Agron 78:139-186
44. Wendel JF, Brubaker CF, Percival AE (1992) Genetic diversity in Gossypium hirsutum and the origin of Upland cotton. Am J Bot 79:1291-1310
45. Westengen OT, Huaman Z, Heun M (2005) Genetic diversity and geographic pattern in early South American cotton domestication. Theor Appl Genet 110:392-402
46. Wright RJ, Thaxton PM, El-Zik KM, Paterson AH (1998) D-subgenome bias of X cm resistance genes in tetraploid Gossypium (cotton) suggests that polyploid formation has created novel avenues for evolution. Genetics 149:1987-1996
47. Zhang J, Guo W, Zhang T (2003) Molecular linkage map of allotetraploid cotton (Gossypium hirsutum L. x Gossypium barbadense L.) with a haploid population. Theor Appl Genet 105:1166-1174
48. Zhang JF, Stewart JM (2000) Economical and rapid method for extracting cotton genomic DNA. J Cotton Sci 4:193-201
49. Zhang JF, Stewart JM (2004) Semigamy gene is associated with chlorophyll reduction in cotton. Crop Sci 44:2054-2062
50. Zhang JF, Lu Y, Cantrell RG, Hughs E (2005) Molecular marker diversity and field performance in commercial cotton cultivars evaluated in the Southwest U.S. Crop Sci 45:1483-1490
51. Zuo KJ, Sun JZ, Zhang JF, Nie YC, Liu JL (2000) Genetic diversity evaluation of some Chinese elite cotton varieties with RAPD markers. Acta Genetica Sinica 27:817-823