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Volumn 164, Issue 1, 2008, Pages 161-165

A visualization and segmentation toolbox for electron microscopy

Author keywords

Electron microscopy toolbox; Image processing; Segmentation; Visualization

Indexed keywords

ANALYTIC METHOD; ARTICLE; COMPUTER PROGRAM; ELECTRON MICROSCOPY; IMAGE ANALYSIS; IMAGE INTENSIFIER; IMAGE PROCESSING; IMAGE QUALITY; PRIORITY JOURNAL; SIGNAL NOISE RATIO; THREE DIMENSIONAL IMAGING;

EID: 51549110953     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2008.05.003     Document Type: Article
Times cited : (76)

References (28)
  • 1
    • 51549119198 scopus 로고    scopus 로고
    • Amira, 2001. User's Guide and Reference Manual. Mercury, Computer Systems, Inc.
    • Amira, 2001. User's Guide and Reference Manual. Mercury, Computer Systems, Inc.
  • 2
    • 0036815763 scopus 로고    scopus 로고
    • Electron tomography: towards visualizing the molecular organization of the cytoplasm
    • Baumeister W. Electron tomography: towards visualizing the molecular organization of the cytoplasm. Curr. Opin. Struct. Biol. 12 (2002) 679-684
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 679-684
    • Baumeister, W.1
  • 3
    • 33644806492 scopus 로고    scopus 로고
    • The mechanism of HIV-1 core assembly: insights from three-dimensional reconstructions of authentic virions
    • Briggs J.A., Grunewald K., Glass B., Forster F., Krausslich H.G., and Fuller S.D. The mechanism of HIV-1 core assembly: insights from three-dimensional reconstructions of authentic virions. Structure 14 (2006) 15-20
    • (2006) Structure , vol.14 , pp. 15-20
    • Briggs, J.A.1    Grunewald, K.2    Glass, B.3    Forster, F.4    Krausslich, H.G.5    Fuller, S.D.6
  • 4
    • 33845286204 scopus 로고    scopus 로고
    • Implementation and performance evaluation of reconstruction algorithms on graphics processors
    • Castano Diez D., Mueller H., and Frangakis A.S. Implementation and performance evaluation of reconstruction algorithms on graphics processors. J. Struct. Biol. 157 (2006) 288-295
    • (2006) J. Struct. Biol. , vol.157 , pp. 288-295
    • Castano Diez, D.1    Mueller, H.2    Frangakis, A.S.3
  • 5
    • 0345414562 scopus 로고    scopus 로고
    • An improved algorithm for anisotropic nonlinear diffusion for denoising cryo-tomograms
    • Fernandez J.J., and Li S. An improved algorithm for anisotropic nonlinear diffusion for denoising cryo-tomograms. J. Struct. Biol. 144 (2003) 152-161
    • (2003) J. Struct. Biol. , vol.144 , pp. 152-161
    • Fernandez, J.J.1    Li, S.2
  • 6
    • 33847232164 scopus 로고    scopus 로고
    • Structure determination in situ by averaging of tomograms
    • Forster F., and Hegerl R. Structure determination in situ by averaging of tomograms. Methods Cell Biol. 79 (2007) 741-767
    • (2007) Methods Cell Biol. , vol.79 , pp. 741-767
    • Forster, F.1    Hegerl, R.2
  • 7
    • 16344390563 scopus 로고    scopus 로고
    • Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography
    • Forster F., Medalia O., Zauberman N., Baumeister W., and Fass D. Retrovirus envelope protein complex structure in situ studied by cryo-electron tomography. Proc. Natl. Acad. Sci. USA 102 (2005) 4729-4734
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 4729-4734
    • Forster, F.1    Medalia, O.2    Zauberman, N.3    Baumeister, W.4    Fass, D.5
  • 8
    • 0035783287 scopus 로고    scopus 로고
    • Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion
    • Frangakis A.S., and Hegerl R. Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion. J. Struct. Biol. 135 (2001) 239-250
    • (2001) J. Struct. Biol. , vol.135 , pp. 239-250
    • Frangakis, A.S.1    Hegerl, R.2
  • 9
    • 0036417303 scopus 로고    scopus 로고
    • Segmentation of two- and three-dimensional data from electron microscopy using eigenvector analysis
    • Frangakis A.S., and Hegerl R. Segmentation of two- and three-dimensional data from electron microscopy using eigenvector analysis. J. Struct. Biol. 138 (2002) 105-113
    • (2002) J. Struct. Biol. , vol.138 , pp. 105-113
    • Frangakis, A.S.1    Hegerl, R.2
  • 10
    • 2942544494 scopus 로고    scopus 로고
    • Computational exploration of structural information from cryo-electron tomograms
    • Frangakis A.S., and Forster F. Computational exploration of structural information from cryo-electron tomograms. Curr. Opin. Struct. Biol. 14 (2004) 325-331
    • (2004) Curr. Opin. Struct. Biol. , vol.14 , pp. 325-331
    • Frangakis, A.S.1    Forster, F.2
  • 11
    • 0035083779 scopus 로고    scopus 로고
    • Wavelet transform filtering and nonlinear anisotropic diffusion assessed for signal reconstruction performance on multidimensional biomedical data
    • Frangakis A.S., Stoschek A., and Hegerl R. Wavelet transform filtering and nonlinear anisotropic diffusion assessed for signal reconstruction performance on multidimensional biomedical data. IEEE Trans. Biomed. Eng. 48 (2001) 213-222
    • (2001) IEEE Trans. Biomed. Eng. , vol.48 , pp. 213-222
    • Frangakis, A.S.1    Stoschek, A.2    Hegerl, R.3
  • 14
    • 51549088470 scopus 로고    scopus 로고
    • Glassner, A.S., 1989. An Introduction to Ray Tracing Morgan Kaufmann, London.
    • Glassner, A.S., 1989. An Introduction to Ray Tracing Morgan Kaufmann, London.
  • 15
    • 0029879294 scopus 로고    scopus 로고
    • The EM program package: a platform for image processing in biological electron microscopy
    • Hegerl R. The EM program package: a platform for image processing in biological electron microscopy. J. Struct. Biol. 116 (1996) 30-34
    • (1996) J. Struct. Biol. , vol.116 , pp. 30-34
    • Hegerl, R.1
  • 16
    • 33845336533 scopus 로고    scopus 로고
    • Bsoft: image processing and molecular modeling for electron microscopy
    • Heymann J.B., and Belnap D.M. Bsoft: image processing and molecular modeling for electron microscopy. J. Struct. Biol. 157 (2007) 3-18
    • (2007) J. Struct. Biol. , vol.157 , pp. 3-18
    • Heymann, J.B.1    Belnap, D.M.2
  • 17
    • 23044475632 scopus 로고    scopus 로고
    • Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology
    • Heymann J.B., Chagoyen M., and Belnap D.M. Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology. J. Struct. Biol. 151 (2005) 196-207
    • (2005) J. Struct. Biol. , vol.151 , pp. 196-207
    • Heymann, J.B.1    Chagoyen, M.2    Belnap, D.M.3
  • 18
    • 0344983355 scopus 로고    scopus 로고
    • Applications of a bilateral denoising filter in biological electron microscopy
    • Jiang W., Baker M.L., Wu Q., Bajaj C., and Chiu W. Applications of a bilateral denoising filter in biological electron microscopy. J. Struct. Biol. 144 (2003) 114-122
    • (2003) J. Struct. Biol. , vol.144 , pp. 114-122
    • Jiang, W.1    Baker, M.L.2    Wu, Q.3    Bajaj, C.4    Chiu, W.5
  • 19
    • 0029879295 scopus 로고    scopus 로고
    • Computer visualization of three-dimensional image data using IMOD
    • Kremer J.R., Mastronarde D.N., and McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116 (1996) 71-76
    • (1996) J. Struct. Biol. , vol.116 , pp. 71-76
    • Kremer, J.R.1    Mastronarde, D.N.2    McIntosh, J.R.3
  • 24
    • 0037333340 scopus 로고    scopus 로고
    • The next ice age: cryo-electron tomography of intact cells
    • Steven A.C., and Aebi U. The next ice age: cryo-electron tomography of intact cells. Trends Cell Biol. 13 (2003) 107-110
    • (2003) Trends Cell Biol. , vol.13 , pp. 107-110
    • Steven, A.C.1    Aebi, U.2
  • 26
    • 0036424944 scopus 로고    scopus 로고
    • A novel three-dimensional variant of the watershed transform for segmentation of electron density maps
    • Volkmann N. A novel three-dimensional variant of the watershed transform for segmentation of electron density maps. J. Struct. Biol. 138 (2002) 123-129
    • (2002) J. Struct. Biol. , vol.138 , pp. 123-129
    • Volkmann, N.1
  • 27
    • 33748038359 scopus 로고    scopus 로고
    • Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ
    • Zanetti G., Briggs J.A., Grunewald K., Sattentau Q.J., and Fuller S.D. Cryo-electron tomographic structure of an immunodeficiency virus envelope complex in situ. PLoS Pathog. 2 (2006) e83
    • (2006) PLoS Pathog. , vol.2
    • Zanetti, G.1    Briggs, J.A.2    Grunewald, K.3    Sattentau, Q.J.4    Fuller, S.D.5
  • 28
    • 0030412929 scopus 로고    scopus 로고
    • Zoeckler, M., Stalling, D., Hege, H.-C., 1996. Interactive Visualization of 3D-Vector Fields using Illuminated Streamlines, Proc. IEEE Visualization '96, San Francisco. pp. 107-113.
    • Zoeckler, M., Stalling, D., Hege, H.-C., 1996. Interactive Visualization of 3D-Vector Fields using Illuminated Streamlines, Proc. IEEE Visualization '96, San Francisco. pp. 107-113.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.