Changes in soil microbial community structure under elevated tropospheric O3 and CO2

Soil Biology and Biochemistry

Volumn 40, Issue 10, 2008, Pages 2502-2510

  Kanerva, Teri ^a   Palojärvi, Ansa ^b   Rämö, Kaisa ^a   Manninen, Sirkku ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b FINNISH FOREST RESEARCH INSTITUTE   (Finland)

Author keywords

Elevated CO2; Elevated O3; Meadow ecosystem; Microbial community; Open top chambers; PLFA

Indexed keywords

ELEVATED CO2; ELEVATED O3; MEADOW ECOSYSTEM; MICROBIAL COMMUNITY; OPEN-TOP CHAMBERS; PLFA;

BIOMASS; CARBON DIOXIDE; COMMUNITY STRUCTURE; ENVIRONMENTAL RESPONSE; FATTY ACID; FUMIGATION; FUNCTIONAL CHANGE; GROWING SEASON; MEADOW; MESOCOSM; MICROBIAL COMMUNITY; OPEN-TOP CHAMBER; OZONE; PHOSPHOLIPID; SOIL ECOSYSTEM; SOIL MICROORGANISM; TROPOSPHERE;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS);

EID: 51549089751     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2008.06.007     Document Type: Article

References (81)

1. Allen Jr. L.H. Plant responses to rising carbon dioxide and potential interactions with air pollutants. Journal of Environmental Quality 19 (1990) 15-34
2. Andersen C.P., Wilson R., Plocherm M., and Hogsettm W.E. Carry-over effects of ozone on root growth and carbohydrate concentrations of ponderosa pine seedlings. Tree Physiology 21 (1997) 1288-1291
3. Andersen C.P. Source-sink balance and carbon allocation below ground in plants exposed to ozone. New Phytologist 157 (2003) 213-228
4. Ashmore M.R., Emberson L.D., Karlsson P.E., and Pleijel H. New Directions. A new generation of ozone critical levels for the protection of vegetation in Europe. Atmospheric Environment 38 (2004) 2213-2214
5. Bååth E., and Anderson T.H. Comparison of soil fungal/bacteria ratios in a pH gradient using physiological and PLFA-based techniques. Soil Biology & Biochemistry 35 (2003) 955-963
6. Bassin S., Kölliker R., Creton C., Bertossa M., Widmer F., Bungener P., and Fuhrer J. Intra-specific variability of ozone sensitivity in Centaurea jacea L., a potential bioindicator for elevated ozone concentrations. Environmental Pollution 131 (2004) 1-12
7. 2 levels. Annual Review of Ecology and Systematics 21 (1990) 167-196
8. Bender J., Bergmann E., Dohrmann A., Tebbe C.C., and Weigel H.J. Impact of ozone on plant competition and structural diversity of rhizosphere microbial communities in grassland mesocosms. Phyton - Annales Rei Botanicae 42 (2002) 7-12
9. Benton J., Fuhrer J., Gimeno B.S., Skärby L., Palmer-Brown D., Ball G., Roadknight C., and Mills G. An international cooperative programme indicates the widespread occurrence of ozone injury on crops. Agriculture, Ecosystems and Environment 78 (2000) 19-30
10. 2. Global Change Biology 11 (2005) 203-212
11. Brookes P.C., Landman A., Pruden G., and Jenkinson D.S. Chloroform fumigation and the release of soil nitrogen: a rapid direct extraction method to measure microbial biomass nitrogen in soil. Soil Biology & Biochemistry 17 (1985) 837-842
12. Chameides W.L., Kasibhatla P.S., Yienger J., and Levy II H. Growth of continental-scale, metro-agro-plexes, regional ozone pollution, and world food production. Science 264 (1994) 74-77
13. 2, and atmospheric nitrogen deposition alter soil microbial community composition and function. Global Change Biology 13 (2007) 980-989
14. Davison A.W., and Barnes J.M. Effects of ozone on wild plants. New Phytologist 139 (1998) 135-151
15. De Temmerman L., Pihl Karlsson G., Donelly A., Ojanperä K., Jäger J., Finnan J., and Ball G. Factors influencing visible ozone injury on potato including the interaction with carbon dioxide. European Journal of Agronomy 17 (2002) 291-302
16. Dohrmann A.B., and Tebbe C.C. Effect of elevated tropospheric ozone on the structure of bacterial communities inhabiting the rhizosphere of herbaceous plants native to Germany. Applied and Environmental Microbiology 71 (2005) 7750-7758
17. 2 enrichment on microbial community structure in calcareous grassland. Plant and Soil 264 (2004) 313-323
18. Edwards G.S., and Kelly J.M. Ectomycorrhizal colonization of loblolly pine seedlings during three growing seasons in response to ozone, acidic precipitation, and soil Mg status. Environmental Pollution 76 (1992) 71-77
19. 2. Plant and Soil 197 (1997) 251-259
20. Franzaring J., Tonneijck A.E.G., Kooijman A.W.N., and Dueck Th.A. Growth responses to ozone in plant species from wetlands. Environmental and Experimental Botany 44 (2000) 39-48
21. Frostegård A., Tunlid A., and Bååth E. Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Applied and Environmental Microbiology 59 (1993) 3605-3617
22. Frostegård A., and Bååth E. The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biology and Fertility of Soils 22 (1996) 59-65
23. Fuhrer J., Skärby L., and Ashmore M.R. Critical levels of ozone on vegetation. Environmental Pollution 97 (1997) 91-106
24. Grayston S.J., and Campbell C.D. Functional biodiversity of microbial communities in the rhizosphere of hybrid larch (Larix eurolepis) and Sitka spruce (Picea sitchensis). Tree Physiology 16 (1996) 1031-1038
25. 2 on the metabolic diversity of microbial communities in N-limited grass swards. Plant and Soil 203 (1998) 289-300
26. Griffiths B.S., Ritz K., Ebblewhite N., Paterson E., and Killham K. Ryegrass rhizosphere microbial community structure under elevated carbon dioxide concentrations, with observations on wheat rhizosphere. Soil Biology & Biochemistry 30 (1998) 315-321
27. 2 on mycorrhizal associations and implications for plant growth. Biology and Fertility of Soils 23 (1996) 388-398
28. 3. Global Change Biology 9 (2003) 1743-1750
29. 2 enrichment. Trends in Ecology and Evolution 14 (1999) 433-437
30. 2 in an artificial tropical ecosystem. Journal of Microbiological Methods 36 (1999) 45-54
31. IPCC. Climate Change 2007 - the Physical Science Basis. Working Group I Contribution to the Fourth Assessment Report of the IPCC (2007), Cambridge University Press, Cambridge, UK 1009 pp.
32. 3 enrichments and moisture variations on microbial biomass and respiration in soil. Global Change Biology 6 (2000) 255-265
33. 2 conditions: a meta analysis of reports on crop and wild species. New Phytologist 156 (2002) 9-26
34. Kainulainen P., Utriainen J., Holopainen J.K., Oksanen J., and Holopainen T. Influence of elevated ozone and limited nitrogen availability on conifer seedlings in an open-air fumigation system: effects on growth, nutrient content, mycorrhiza, needle ultrastructure, starch and secondary compounds. Global Change Biology 6 (2000) 345-355
35. 2 and temperature in a terrestrial model ecosystem. Plant and Soil 202 (1998) 251-262
36. Kanerva T., Regina K., Rämö K., Karhu K., Ojanperä K., and Manninen S. Mesocosms mimic natural meadows as regards greenhouse gas fluxes and potential activities of nitrifying and denitrifying bacteria. Plant and Soil 276 (2005) 287-299
37. 3 induced minor changes in soil N cycling in a meadow ecosystem. Plant and Soil 286 (2006) 61-73
38. 2 in a meadow ecosystem exposed to elevated ozone and carbon dioxide for three years. Environmental Pollution 145 (2007) 818-828
39. 3 on fine roots and mycorrhizas of naturally growing young Scots pine trees during three exposure years. Global Change Biology 5 (1999) 771-780
40. 3 levels during three growing seasons. Global Change Biology 11 (2005) 1167-1179
41. 2. Functional Ecology 10 (1996) 527-534
42. Körner C., and Arnone III J.A. Response to elevated carbon dioxide in artificial tropical ecosystems. Science 257 (1992) 1672-1675
43. 2 and ozone reduce nitrogen acquisition by Pinus halepensis from its mycorrhizal symbiont. Physiologia Plantarum 111 (2001) 305-312
44. Larson J.L., Zak D.R., and Sinsabaugh R.L. Extracellular enzyme activity beneath temperate trees growing under elevated carbon dioxide and ozone. Soil Science Society of America Journal 66 (2002) 1848-1856
45. Laughlin R.J., and Stevens R.J. Evidence for fungal dominance of denitrification and codenitrification in a grassland soil. Soil Science Society of America Journal 66 (2002) 1540-1548
46. Laurila T., Tuovinen J.-P., Tarvainen V., and Simpson D. Trends and scenarios of ground-level ozone concentrations in Finland. Boreal Environment Research 9 (2004) 167-184
47. Lövblad G., Grennfelt P., Kärenlampi L., Laurila T., Mortensen L., Ojanperä K., Pleijel H., Semb A., Simpson D., Skärby L., Tuovinen J.-P., and Torseth K. Ozone Exposure Mapping in the Nordic Countries. Tema-Nord 1996: 522 (1996), Nordic Council of Ministries, Copenhagen
48. Macalady J.L., Mack E.E., Nelson D.C., and Scow K.M. Sediment microbial community structure and mercury methylation in mercury-polluted Clear Lake, California. Applied and Environmental Microbiology 66 (2000) 1479-1488
49. 3. In: Wieser G., and Tausz M. (Eds). Proceedings on the Workshop "Critical Levels of Ozone: Further Applying and Developing the Flux-based Concept", 15-19 November, Obergurgl, Tyrol, Austria (2005) 127-132
50. Marenco A., Gouget H., Nedelec P., Pages J.P., and Karcher F. Evidence of a long-term increase in tropospheric ozone from Pic du Midi series: consequences: positive radiative forcing. Journal of Geophysical Research 99 D8 (1994) 16617-16632
51. 2 concentration: ozone exclusion and detoxification. New Phytologist 137 (1997) 275-284
52. 3 damage to photosynthetic tissues of field-grown wheat. New Phytologist 146 (2000) 427-435
53. Miller M., Palojärvi A., Rangger A., Reeslev M., and Kjøller A. The use of fluorogenic substrates to measure fungal presence and activity in soil. Applied and Environmental Microbiolgy 64 (1998) 613-617
54. Montealegre C.M., van Kessel C., Russelle M.P., and Sadowsky M.J. Changes in microbial activity and composition in a pasture ecosystem exposed to elevated atmospheric carbon dioxide. Plant and Soil 243 (2002) 197-207
55. Nebel B., and Fuhrer J. Inter- and intraspecific differences in ozone sensitivity in semi-natural plant communities. Angewandte Botanik 68 (1994) 116-121
56. 2 enrichment evoke changes in soil structure and soil biota of nutrient-poor grassland. Global Change Biology 9 (2003) 585-600
57. Olsson P.A. Signature fatty acids provide tools for determination of distribution and interactions of mycorrhizal fungi in soil. FEMS Microbiology Ecology 29 (1999) 303-310
58. 3 on a ponderosa pine plant/litter/soil mesocosm. Environmental Pollution 115 (2001) 447-462
59. 2 uptake, Rubisco, leaf senescence and grain filling. New Phytologist 138 (1998) 451-460
60. Palojärvi A. Phospholipid fatty acid (PLFA) analyses. In: Bloem J., Hopkins D.W., and Benedetti A. (Eds). Microbiological Methods For Assessing Soil Quality (2006), CAB International, UK 204-211
61. 3. Oecologia 131 (2002) 236-244
62. Pleijel H., Grennfelt P., and Skärby L. Synthesis and evaluation. In: Pleijel H. (Ed). Ground-Level Ozone - a Threat to Vegetation (1999) Swedish Environmental Protection Agency, Report 4970, pp. 91-105
63. Pleijel H., Danielson H., Karlsson G.P., Gelang J., Karlsson P.E., and Selldén G. An ozone flux-relationship for wheat. Environmental Pollution 109 (2000) 453-462
64. 2 under non-optimal environmental conditions. Oecologia 129 (2001) 1-20
65. Power S.A., and Ashmore M.R. Responses of fen and fen-meadow communities to ozone. New Phytologist 156 (2002) 339-408
66. Rämö K., Kanerva T., Nikula S., Ojanperä K., and Manninen S. Influences of elevated ozone and carbon dioxide in growth responses of lowland hay meadow mesocosms. Environmental Pollution 144 (2006) 101-111
67. 3 and nutrient status of trees: effects on nutrient content and uptake, growth, mycorrhiza and needle ultrastructure. New Phytologist 128 (1994) 679-687
68. Ringelberg D.B., Stair J.O., Almeida J., Norby R.J., O'Neill E.G., and White D.C. Consequences of rising atmospheric carbon dioxide levels for belowground microbiota associated with white oak. Journal of Environmental Quality 26 (1997) 495-503
69. 2 and presence of mycorrhiza. Soil Biology & Biochemistry 34 (2002) 923-932
70. Ruzicka S., Edgerton D., Norman M., and Hill T. The utility of ergosterol as a bioindicator of fungi in temperate soils. Soil Biology & Biochemistry 34 (2000) 989-1005
71. Schortemeyer M., Hartwig U.A., Hendrey G.R., and Sadowsky M.J. Microbial community changes in the rhizosphere of white clover and perennial ryegrass exposed to free air carbon dioxide enrichment (FACE). Soil Biology & Biochemistry 28 (1996) 1717-1724
72. SPSS Inc. SPSS for Windows Version 11.0 (2001), SPSS, Chicago, Illinois, USA
73. Stoeck T., Kröncke I., Duineveld G., and Palojärvi A. Phospholipid fatty acid profiles at depositional and non-depositional sites in the North Sea. Marine Ecology Progress Series 241 (2002) 57-70
74. Vance E.D., Brookes P.C., and Jenkinson D.S. An extraction method for measuring soil microbial biomass. Soil Biology & Biochemistry 19 (1987) 703-707
75. Vingarzan R. A review of surface ozone background levels and trends. Atmospheric Environment 33 (2004) 3431-3442
76. Volin J.C., Reich P.B., and Givnish T.J. Elevated carbon dioxide ameliorates the effects of ozone on photosynthesis and growth: species respond similarly regardless of photosynthetic pathway or plant functional group. New Phytologist 138 (1998) 315-325
77. Vorne V., Ojanperä K., De Temmerman L., Bindi M., Högy P., Jones M.B., Lawson T., and Persson K. Effects of elevated carbon dioxide and ozone on potato tuber quality in the European multiple-site experiment 'CHIP-project'. European Journal of Agronomy 17 (2002) 369-381
78. Wiemken V., Laczko E., Ineichen K., and Boller T. Effects of elevated carbon dioxide and nitrogen fertilization on mycorrhizal fine roots and the soil microbial community in beech-spruce ecosystems on siliceous and calcareous soil. Microbial Ecology 42 (2001) 126-135
79. Yoshida L.C., Gamon J.A., and Andersen C.P. Differences in above-and below-ground responses to ozone between two populations of a perennial grass. Plant and Soil 233 (2001) 203-211
80. 2 and the composition and function of soil microbial communities. Ecological Application 10 (2000) 47-59
81. Zelles L. Fatty acid patterns of phospholipid and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biology and Fertility of Soils 29 (1999) 111-129