메뉴 건너뛰기




Volumn 19, Issue 3, 2008, Pages 159-166

Complete mitochondrial DNA sequences of the frigate tuna Auxis thazard and the bullet tuna Auxis rochei

Author keywords

Auxis rochei; Auxis thazard; Mitogenome; Mitotype; Phylogeny

Indexed keywords

MITOCHONDRIAL DNA; TRANSFER RNA;

EID: 51449090799     PISSN: 10425179     EISSN: 10292365     Source Type: Journal    
DOI: 10.1080/10425170701207117     Document Type: Article
Times cited : (31)

References (40)
  • 1
    • 0029731773 scopus 로고    scopus 로고
    • Global population structure of the swordfish (Xiphias gladius L.) as revealed by analysis of the mitochondrial DNA control region
    • Alvarado Bremer JR, Mejuto J, Greig TW, Ely B. 1996. Global population structure of the swordfish (Xiphias gladius L.) as revealed by analysis of the mitochondrial DNA control region. J Exp Mar Biol Ecol 197:295-310.
    • (1996) J Exp Mar Biol Ecol , vol.197 , pp. 295-310
    • Alvarado Bremer, J.R.1    Mejuto, J.2    Greig, T.W.3    Ely, B.4
  • 2
    • 0031106031 scopus 로고    scopus 로고
    • Orthodox and unorthodox phylogenetic relationships among tunas revealed by the nucleotide sequence analysis of the mitochondrial DNA control region
    • Alvarado Bremer JR, Naseri I, Ely B. 1997. Orthodox and unorthodox phylogenetic relationships among tunas revealed by the nucleotide sequence analysis of the mitochondrial DNA control region. J Fish Biol 50:540-554.
    • (1997) J Fish Biol , vol.50 , pp. 540-554
    • Alvarado Bremer, J.R.1    Naseri, I.2    Ely, B.3
  • 3
    • 0032433463 scopus 로고    scopus 로고
    • Genetic evidence for inter-oceanic subdivision of bigeye tuna (Thunnus obesus) populations
    • Alvarado Bremer JR, Stequert B, Robertson NW, Ely B. 1998. Genetic evidence for inter-oceanic subdivision of bigeye tuna (Thunnus obesus) populations. Mar Biol 132:547-557.
    • (1998) Mar Biol , vol.132 , pp. 547-557
    • Alvarado Bremer, J.R.1    Stequert, B.2    Robertson, N.W.3    Ely, B.4
  • 5
    • 0027231871 scopus 로고
    • Evolution of endothermy in fish: Mapping physiological traits on a molecular phylogeny
    • Block BA, Finnerty JR, Stewart AF, Gidd J. 1993. Evolution of endothermy in fish: Mapping physiological traits on a molecular phylogeny. Science 260:210-214.
    • (1993) Science , vol.260 , pp. 210-214
    • Block, B.A.1    Finnerty, J.R.2    Stewart, A.F.3    Gidd, J.4
  • 6
    • 0035179744 scopus 로고    scopus 로고
    • The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA
    • Broughton RE, Milam JE, Roe BA. 2001. The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA. Genome Res 11:1958-1967.
    • (2001) Genome Res , vol.11 , pp. 1958-1967
    • Broughton, R.E.1    Milam, J.E.2    Roe, B.A.3
  • 7
    • 0033561361 scopus 로고    scopus 로고
    • Animal mitochondrial genomes
    • Boore JL. 1999. Animal mitochondrial genomes. Nucleic Acids Res 27:1767-1780.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1767-1780
    • Boore, J.L.1
  • 8
    • 0029589302 scopus 로고
    • Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes
    • Chow S, Kishino H. 1995. Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes. J Mol Evol 41:741-748.
    • (1995) J Mol Evol , vol.41 , pp. 741-748
    • Chow, S.1    Kishino, H.2
  • 9
    • 20644445539 scopus 로고    scopus 로고
    • Genetic and morphological identification of larval and small juvenile tunas (Pisces: Scombridae) caught by a mid-water trawl in the western Pacific
    • Chow S, Nohara K, Tanabe T, Itoh T, Tsuji S, Nishikawa Y, Uyeyanagi S, Uchikawa K. 2003. Genetic and morphological identification of larval and small juvenile tunas (Pisces: Scombridae) caught by a mid-water trawl in the western Pacific. Bull Fish Res Agen 8:1-14.
    • (2003) Bull Fish Res Agen , vol.8 , pp. 1-14
    • Chow, S.1    Nohara, K.2    Tanabe, T.3    Itoh, T.4    Tsuji, S.5    Nishikawa, Y.6    Uyeyanagi, S.7    Uchikawa, K.8
  • 10
    • 0034144343 scopus 로고    scopus 로고
    • Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa
    • Chow S, Okamoto H, Miyabe N, Hiramatsu K, Barut N. 2000. Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa. Mol Ecol 9:221-227.
    • (2000) Mol Ecol , vol.9 , pp. 221-227
    • Chow, S.1    Okamoto, H.2    Miyabe, N.3    Hiramatsu, K.4    Barut, N.5
  • 11
    • 0021118509 scopus 로고
    • Transcription of the mammalian mitochondrial genome
    • Clayton DA. 1984. Transcription of the mammalian mitochondrial genome. Annu Rev Biochem 53:573-594.
    • (1984) Annu Rev Biochem , vol.53 , pp. 573-594
    • Clayton, D.A.1
  • 12
    • 0029783977 scopus 로고    scopus 로고
    • Revision of the frigate tunas (Scombridae, Auxis), with descriptions of two new subspecies from the eastern Pacific
    • Collette BB, Aadland CR. 1996. Revision of the frigate tunas (Scombridae, Auxis), with descriptions of two new subspecies from the eastern Pacific. Fish Bull 94:423-441.
    • (1996) Fish Bull , vol.94 , pp. 423-441
    • Collette, B.B.1    Aadland, C.R.2
  • 13
    • 35648985741 scopus 로고    scopus 로고
    • Systematics of the tunas and mackerels (Scombridae)
    • Collette BB, Reeb C, Block B. 2001. Systematics of the tunas and mackerels (Scombridae). Fish Physiol 19:1-33.
    • (2001) Fish Physiol , vol.19 , pp. 1-33
    • Collette, B.B.1    Reeb, C.2    Block, B.3
  • 14
    • 0033213874 scopus 로고    scopus 로고
    • Mitogenomics: Digging deeper with complete mitochondrial genomes
    • Curole JP, Kocher TD. 1999. Mitogenomics: Digging deeper with complete mitochondrial genomes. Tree 14:394-398.
    • (1999) Tree , vol.14 , pp. 394-398
    • Curole, J.P.1    Kocher, T.D.2
  • 15
    • 77956844355 scopus 로고
    • Kates M, Kushner DJ, Matheson AT, editors, Amsterdam: Elsevier. p
    • Dalgaard JZ, Garret TA. 1993. In: Kates M, Kushner DJ, Matheson AT, editors. Archaeal hyperthermophile genes. Amsterdam: Elsevier. p 535-563.
    • (1993) Archaeal hyperthermophile genes , pp. 535-563
    • Dalgaard, J.Z.1    Garret, T.A.2
  • 16
    • 0012353175 scopus 로고
    • Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences
    • Doda JN, Wright CT, Clayton DA. 1981. Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc Natl Acad Sci USA 78:6116-6120.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 6116-6120
    • Doda, J.N.1    Wright, C.T.2    Clayton, D.A.3
  • 17
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 18
    • 0030900384 scopus 로고    scopus 로고
    • Relationships between genomic G + C content, RNA secondary structures and optimal growth temperture in prokaryotes
    • Galtier N, Lobry JR. 1997. Relationships between genomic G + C content, RNA secondary structures and optimal growth temperture in prokaryotes. J Mol Evol 44:632-663.
    • (1997) J Mol Evol , vol.44 , pp. 632-663
    • Galtier, N.1    Lobry, J.R.2
  • 19
    • 0032740650 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the Atlantic Salmon, Salmo salar
    • Hurst CD, Barlett SE, Davidson WS, Bruce IJ. 1999. The complete mitochondrial DNA sequence of the Atlantic Salmon, Salmo salar. Gene 239:237-242.
    • (1999) Gene , vol.239 , pp. 237-242
    • Hurst, C.D.1    Barlett, S.E.2    Davidson, W.S.3    Bruce, I.J.4
  • 20
    • 10644271557 scopus 로고    scopus 로고
    • Novel method for the authentication of frigate tunas (Auxis thazard and Auxis rochei) in commercial canned products
    • Infante C, Catanese G, Ponce M, Manchado M. 2004. Novel method for the authentication of frigate tunas (Auxis thazard and Auxis rochei) in commercial canned products. J Agric Food Chem 52:7435-7443.
    • (2004) J Agric Food Chem , vol.52 , pp. 7435-7443
    • Infante, C.1    Catanese, G.2    Ponce, M.3    Manchado, M.4
  • 21
    • 0034904214 scopus 로고    scopus 로고
    • A mitogenomic perspective on the basal teleostean phylogeny: Resolving higher-level relationships with longer DNA sequences
    • Inoue JG, Miya M, Tsukamoto K, Nishida M. 2001a. A mitogenomic perspective on the basal teleostean phylogeny: Resolving higher-level relationships with longer DNA sequences. Mol Phylogenet Evol 20:275-285.
    • (2001) Mol Phylogenet Evol , vol.20 , pp. 275-285
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 22
    • 0000307861 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Japanese anchovy Engraulis japonicus
    • Inoue JG, Miya M, Tsukamoto K, Nishida M. 2001b. Complete mitochondrial DNA sequence of the Japanese anchovy Engraulis japonicus. Fish Sci 67:828-835.
    • (2001) Fish Sci , vol.67 , pp. 828-835
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 23
    • 25144447559 scopus 로고    scopus 로고
    • Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: Implications for higher-level relationships within the Otocephala
    • Lavoue S, Miya M, Inoue JG, Saitoh K, Ishiguro NB, Nishida M. 2005. Molecular systematics of the gonorynchiform fishes (Teleostei) based on whole mitogenome sequences: Implications for higher-level relationships within the Otocephala. Mol Phylogenet Evol 37:165-177.
    • (2005) Mol Phylogenet Evol , vol.37 , pp. 165-177
    • Lavoue, S.1    Miya, M.2    Inoue, J.G.3    Saitoh, K.4    Ishiguro, N.B.5    Nishida, M.6
  • 24
    • 0029053662 scopus 로고
    • Structure and evolution of teleost mitochondrial control region
    • Lee WJ, Conroy J, Howell WH, Kocher TD. 1995. Structure and evolution of teleost mitochondrial control region. J Mol Evol 41:54-66.
    • (1995) J Mol Evol , vol.41 , pp. 54-66
    • Lee, W.J.1    Conroy, J.2    Howell, W.H.3    Kocher, T.D.4
  • 25
    • 33244486794 scopus 로고    scopus 로고
    • The complete mitochondrial genome sequence and characterization of single-nucleotide polymorphisms in the control region of the Asian seabass (Lates calcarifer)
    • Lin G, Lo LC, Zhu ZY, Feng F, Chou R, Yue GH. 2006. The complete mitochondrial genome sequence and characterization of single-nucleotide polymorphisms in the control region of the Asian seabass (Lates calcarifer). Mar Biotechnol 8:71-79.
    • (2006) Mar Biotechnol , vol.8 , pp. 71-79
    • Lin, G.1    Lo, L.C.2    Zhu, Z.Y.3    Feng, F.4    Chou, R.5    Yue, G.H.6
  • 26
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 27
    • 1542351350 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of the Atlantic bluefin tuna Thunnus thynnus
    • Manchado M, Catanese G, Infante C. 2004. Complete mitochondrial DNA sequence of the Atlantic bluefin tuna Thunnus thynnus. Fish Sci 70:68-73.
    • (2004) Fish Sci , vol.70 , pp. 68-73
    • Manchado, M.1    Catanese, G.2    Infante, C.3
  • 28
    • 74549183083 scopus 로고    scopus 로고
    • Estudio comparativo del ADN mitocondrial en miembros de la familia Scombridae Consejería de Agricultura y Pesca de la Junta de Andalucía
    • editor. Sevilla
    • Manchado M, Catanese G, Infante C. 2005. Estudio comparativo del ADN mitocondrial en miembros de la familia Scombridae Consejería de Agricultura y Pesca de la Junta de Andalucía, editor. Sevilla: Libro de Actas IX Congreso Nacional de Acuicultura Cádiz 2003. p 149-153.
    • (2003) Libro de Actas IX Congreso Nacional de Acuicultura Cádiz , pp. 149-153
    • Manchado, M.1    Catanese, G.2    Infante, C.3
  • 29
    • 0034749003 scopus 로고    scopus 로고
    • Mitogenomic exploration of higher teleostean phylogenies: A case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences
    • Miya M, Kawaguchi A, Nishida M. 2001. Mitogenomic exploration of higher teleostean phylogenies: A case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol Biol Evol 18:1993-2009.
    • (2001) Mol Biol Evol , vol.18 , pp. 1993-2009
    • Miya, M.1    Kawaguchi, A.2    Nishida, M.3
  • 31
    • 11144339387 scopus 로고    scopus 로고
    • Water buffalo (Bubalus bubalis): Complete nucleotide mitochondrial genome sequence
    • Parma P, Erra-Pujada M, Feligini M, Greppi G, Enne G. 2004. Water buffalo (Bubalus bubalis): Complete nucleotide mitochondrial genome sequence. DNA Seq 15:369-373.
    • (2004) DNA Seq , vol.15 , pp. 369-373
    • Parma, P.1    Erra-Pujada, M.2    Feligini, M.3    Greppi, G.4    Enne, G.5
  • 32
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 33
    • 0029669748 scopus 로고    scopus 로고
    • Mitochondrial control region variability and global population structure in the swordfish, Xiphias gladius
    • Rosel PE, Block BA. 1996. Mitochondrial control region variability and global population structure in the swordfish, Xiphias gladius. Mar Biol 125:11-22.
    • (1996) Mar Biol , vol.125 , pp. 11-22
    • Rosel, P.E.1    Block, B.A.2
  • 35
    • 0031593240 scopus 로고    scopus 로고
    • Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications
    • Sbisà E, Tanzariello F, Reyes A, Pesole G, Saccone C. 1997. Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications. Gene 205:125-140.
    • (1997) Gene , vol.205 , pp. 125-140
    • Sbisà, E.1    Tanzariello, F.2    Reyes, A.3    Pesole, G.4    Saccone, C.5
  • 36
    • 51649106948 scopus 로고    scopus 로고
    • Swofford DL. 2000. PAUP* phylogenetic analysis using parsimony (*and other methods) version 4.0b2. Sunderland, Mass. Sinauer
    • Swofford DL. 2000. PAUP* phylogenetic analysis using parsimony (*and other methods) version 4.0b2. Sunderland, Mass. Sinauer.
  • 37
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in human and chimpanzees
    • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in human and chimpanzees. Mol Biol Evol 10:512-526.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 38
    • 4344593014 scopus 로고    scopus 로고
    • Inter-oceanic genetic differentiation among albacore (Thunnus alalunga) populations
    • Viñas J, Alvarado Bremer J, Pla C. 2004a. Inter-oceanic genetic differentiation among albacore (Thunnus alalunga) populations. Mar Biol 145:225-232.
    • (2004) Mar Biol , vol.145 , pp. 225-232
    • Viñas, J.1    Alvarado Bremer, J.2    Pla, C.3
  • 39
    • 4344672205 scopus 로고    scopus 로고
    • Phylogeography of the Atlantic bonito (Sarda sarda) in the northern Mediterranean: The combined effects of historical vicariance, population expansion, secondary invasion, and isolation by distance
    • Viñas J, Alvarado Bremer J, Pla C. 2004b. Phylogeography of the Atlantic bonito (Sarda sarda) in the northern Mediterranean: The combined effects of historical vicariance, population expansion, secondary invasion, and isolation by distance. Mol Phylogenet Evol 33:32-42.
    • (2004) Mol Phylogenet Evol , vol.33 , pp. 32-42
    • Viñas, J.1    Alvarado Bremer, J.2    Pla, C.3
  • 40
    • 0036606141 scopus 로고    scopus 로고
    • Evidence for strong selective constraint acting on nucleotide composition of 16S ribosomal RNA genes
    • Wang HC, Hickey DA. 2002. Evidence for strong selective constraint acting on nucleotide composition of 16S ribosomal RNA genes. Nucleic Acids Res 30:2501-2507.
    • (2002) Nucleic Acids Res , vol.30 , pp. 2501-2507
    • Wang, H.C.1    Hickey, D.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.