Inter-oceanic genetic differentiation among albacore (Thunnus alalunga) populations

Marine Biology

Volumn 145, Issue 2, 2004, Pages 225-232

  Vinas J ^a   Alvarado Bremer, J R ^a   Pla, C ^b  

^a TEXAS A AND M UNIVERSITY AT GALVESTON   (United States)

^b UNIVERSITY OF GIRONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

FISHERY MANAGEMENT; GENETIC DIFFERENTIATION; POPULATION GENETICS; STOCK IDENTIFICATION; TUNA FISHERY;

ATLANTIC OCEAN; ATLANTIC OCEAN (NORTHEAST); MEDITERRANEAN SEA;

PISCES; THUNNUS ALALUNGA;

EID: 4344593014     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (53)

1. Alvarado Bremer JR (1994) Assessment of morphological and genetic variation of the swordfish (Xiphias gladius Linnaeus): evolutionary patterns of nucleotide substitution in the mitochondrial genome. PhD Thesis University of Toronto, Ontario, Canada
2. Alvarado Bremer JR, Mejuto J, Baker AJ (1995) Mitochondrial DNA control region sequences indicate extensive mixing of swordfish (Xiphias gladius) populations in the Atlantic Ocean. Can J Fish Aquatic Sci 52:1720-1732
3. Alvarado Bremer JR, Mejuto J, Greig TW, Ely B (1996) Global population structure of the swordfish (Xiphias gladius L.) as revealed by analysis of the mitochondrial DNA control region. J Exp Mar Biol Ecol 197:295-310
4. Alvarado Bremer JR, Naseri I, Ely B (1997) Orthodox and unorthodox phylogenetic relationships among tunas revealed by the nucleotide sequence analysis of the mitochondrial control region. J Fish Biol 50:540-554
5. Alvarado Bremer JR, Stequert B, Robertson NW, Ely B (1998) Genetic evidence for inter-oceanic subdivision of bigeye tuna (Thunnus obesus) populations. Mar Biol 132:547-557
6. Arrizabalaga H, López-Rodas V, Ortíz de Zárate V, Costas E, González-Garcés A (2002) Study on the migrations and stock structure of albacore (Thunnus alalunga) from the Atlantic Ocean and the Mediterranean Sea based on conventional tag release-recapture experiences. ICCAT Coll Vol Sci Pap 54:1479-1494
7. Bandelt HJ, Forster P, Sykes BC, Richards MB (1995) Mitochondrial portraits of human populations using median networks. Genetics 141:743-753
8. Bandelt HJ, Forster P, Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48
9. Beardsley FL (1969) Proposed migrations of albacore (Thunnus alalunga) in the Atlantic Ocean. Trans Am Fish Soc 98:589-590
10. Chow S, Ushiama H (1995) Global population structure of albacore (Thunnus alalunga) inferred by RFLP analysis of the mitochondrial ATPase gene. Mar Biol 123:39-45
11. Chow S, Okamoto H, Miyabe N, Hiramatsu K, Barut N (2000) Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa. Mol Ecol 9:221-227
12. th Indo-Pacfic Fish Conf, Noumeá, 1997, Soc Fr Icthyol pp149-164
13. Collette BB, Nauen DA (1983) FAO species catalogue, Vol. 2. Scombrids of the world: an annotated and illustrated catalogue of tunas, mackerels, bonitos, and related species known to date. FAO Fish Synop 125:1-137
14. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491
15. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
16. Finnerty JR, Block BA (1992) Direct sequencing of mitochondrial DNA detects highly divergent haplotypes in blue marlin (Makaira nigricans). Mol Mar Biol Biotechnol 1:206-214
17. Fitch WM (1971) Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-410
18. Graves JE, McDowell JR (1995) Inter-ocean genetic-divergence of istiophorid billfishes. Mar Biol 122:193-203
19. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
20. Harpending HC, Batzer MA, Gurven M, Jorde LB, Rogers AR, Sherry ST (1998) Genetic traces of ancient demography. Proc Natl Acad Sci USA 95:1961-1967
21. Holm S (1979) A simple sequentially rejective multiple test procedure. Scand J Statist 6:65-70
22. ICCAT (2002) International Comission for the Conservation of Atlantic tunas. Report for the biennial period 2000-2001. Part II, Madrid, Spain
23. Kluge AG, Farris JS (1969) Quantitative phyletics and the evolution of anurans. Syst Zool 18:1-32
24. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
25. McElroy D, Moran P, Bermingham E, Kornfield I (1992) REAP: an integrated environment for the manipulation and phylogenic analysis of restriction data. J Hered 83:157-158
26. Megalofonou P (2000) Age and growth of Mediterranean albacore. J Fish Biol 57:700-715
27. Moritz C (1994) Defining "evolutionarily significant units" for conservation. Trends Ecol Evol 9:373-375
28. Moritz C, Dowling TE, Brown WM (1987) Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu Rev Ecol Syst 18:269-292.
29. Murray T (1994) A review of the biology and fisheries for albacore, Thunnus alalunga, in the South Pacific Ocean. In: Shomura RS, Majkowski J, Langi S (eds) Interactions of Pacific tuna fisheries. FAO Fish Tech Pap No 336/2:188-206
30. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York
31. Nei M, Tajima F (1981) DNA polymorphism detectable by restriction endonucleases. Genetics 97:145-163
32. Nesbø CL, Rueness EK, Iversen SA, Skagen DW, Jakobsen KS (2000) Phylogeography and population history of Atlantic mackerel (Scomber scombrus L.): a genealogical approach reveals genetic structuring among the eastern Atlantic stocks. Proc R Soc Lond B 267:281-292
33. Ortíz de Zárate V, Cort JL (1998) Albacore (Thunnus alalunga, Bonaterre) stock structure in the Atlantic Ocean, as inferred from distribution and migration patterns. ICCAT Coll Vol Sci Pap 50:251-261
34. Otsu T, Uchida RN (1959) Sexual maturity and spawning of albacore in the Pacific Ocean. Fish Bull 59:287-305
35. Piccinetti C, Piccinetti-Mafrin G, Soro S (1996) Larve di tunnidi in Mediterranea. Biol Mar Medit 3:303-309
36. Posada D, Crandall KA (2001) Intraspecific gene genealogies: trees grafting into networks. Trends Ecol Evol 16:37-45
37. Pujolar JM, Roldán MI, Pla C (2003) Genetic analysis of tuna populations Thunnus thynnus thynnus and T. alalunga. Mar Biol 143:613-621
38. Ramón D, Bailey K (1996) Spawning seasonality of albacore, Thunnus alalunga, in the South Pacific Ocean. Fish Bull 88:207-216
39. Reeb CA, Arcangeli L, Block BA (2000) Structure and migration corridors in Pacific populations of the Swordfish Xiphius gladius, as inferred through analyses of mitochondrial DNA. Mar Biol 136:1123-1131
40. Rice WR (1989) Analyzing tables of statistical test. Evolution 43:223-225
41. 2 and the problem of small sample sizes. MoL Biol Evol 6:539-545
42. Rosel PE, Block BA (1996) Mitochondrial control region variability and global population structure in the swordfish, Xiphias gladius. Mar Biol 125:11-22
43. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
44. Sambrook J, Fritsch EJ, Maniatis. T (1989) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory, New York
45. Schneider S, Roessli D, Excoffier L (2000) Arlequin: A software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneve, Switzerland
46. Slatkin M, Hudson R (1991) Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562
47. Slatkin M, Maddison WP (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123:603-613
48. Swofford DL (2000) PAUP*. Phylogenetic analysis using parsimony (* and other methods). Sinauer, Sunderland, Mass.
49. Takagi M, Okamura T, Chow S, Taniguchi N (2001) Preliminary study of albacore (Thunnus alalunga) stock differentiation inferred from microsatellite DNA analysis. Fish Bull 99:697-701
50. Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526
51. Viñas J, Santiago J, Pla C (1999) Genetic characterization and Atlantic Mediterranean stock structure of Albacore, Thunnus alalunga. ICCAT Coll Vol Sci Pap 49:188-191
52. Wakeley J (1993) Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA. J Mol Evol 37:613-623
53. Xia X, Xie Z (2001) DAMBE: data analysis in molecular biology and evolution. J Hered 92:371-373