-
1
-
-
0001415964
-
The pitch of chromatin DNA is reflected in its nucleotide sequence
-
E. Trifonov, and J. Sussman The pitch of chromatin DNA is reflected in its nucleotide sequence Proc. Natl Acad. Sci. USA 77 1980 3816 3820
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 3816-3820
-
-
Trifonov, E.1
Sussman, J.2
-
2
-
-
0033379115
-
DNA repeats archaeal nucleosome positioning
-
K. Bailey, and J. Reeve DNA repeats archaeal nucleosome positioning Res. Microbiol. 150 1999 701 709
-
(1999)
Res. Microbiol.
, vol.150
, pp. 701-709
-
-
Bailey, K.1
Reeve, J.2
-
3
-
-
0031757877
-
Sequence periodicity in complete genomes of archaea suggests positive supercoiling
-
H. Herzel, O. Weiss, and E. Trifonov Sequence periodicity in complete genomes of archaea suggests positive supercoiling J. Biomol. Struct. Dynam. 16 1998 341 345
-
(1998)
J. Biomol. Struct. Dynam.
, vol.16
, pp. 341-345
-
-
Herzel, H.1
Weiss, O.2
Trifonov, E.3
-
4
-
-
0030596486
-
Short-range order in two eukaryotic genomes: Relation to chromosome structure
-
J. Widom Short-range order in two eukaryotic genomes: relation to chromosome structure J. Mol. Biol. 259 1996 579 588
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 579-588
-
-
Widom, J.1
-
5
-
-
0032891716
-
10-11 bp periodicities in complete genomes reflect protein structure and DNA folding
-
H. Herzel, O. Weiss, and E. Trifonov 10-11 bp periodicities in complete genomes reflect protein structure and DNA folding Bioinformatics 15 1999 187 193
-
(1999)
Bioinformatics
, vol.15
, pp. 187-193
-
-
Herzel, H.1
Weiss, O.2
Trifonov, E.3
-
6
-
-
0032770571
-
ApA dinucleotide periodicity in prokaryote, eukaryote, and organelle genomes
-
M. Tomita, M. Wada, and Y. Kawashima ApA dinucleotide periodicity in prokaryote, eukaryote, and organelle genomes J. Mol. Evol. 49 1999 182 192
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 182-192
-
-
Tomita, M.1
Wada, M.2
Kawashima, Y.3
-
7
-
-
0034141421
-
Structural analysis of DNA sequence: Evidence for lateral gene transfer in Thermotoga maritima
-
P. Worning, L. Jensen, K. Nelson, S. Brunak, and D. Ussery Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima Nucl. Acids Res. 28 2000 706 709
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 706-709
-
-
Worning, P.1
Jensen, L.2
Nelson, K.3
Brunak, S.4
Ussery, D.5
-
8
-
-
42749101835
-
Repeats and correlations in human DNA sequences
-
D. Holste, I. Grosse, S. Beirer, P. Schieg, and H. Herzel Repeats and correlations in human DNA sequences Phys. Rev. E 67 2003 061913
-
(2003)
Phys. Rev. e
, vol.67
, pp. 061913
-
-
Holste, D.1
Grosse, I.2
Beirer, S.3
Schieg, P.4
Herzel, H.5
-
9
-
-
0035847859
-
Longe-range correlations in genomic DNA: A signature of the nucleosomal structure
-
B. Audit, C. Thermes, C. Vaillant, Y. d'Aubenton-Carafa, J. Muzy, and A. Arneodo Longe-range correlations in genomic DNA: a signature of the nucleosomal structure Phys. Rev. Letters 86 2001 2471 2474
-
(2001)
Phys. Rev. Letters
, vol.86
, pp. 2471-2474
-
-
Audit, B.1
Thermes, C.2
Vaillant, C.3
D'Aubenton-Carafa, Y.4
Muzy, J.5
Arneodo, A.6
-
10
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 Å resolution
-
K. Luger, A. Mader, R. Richmond, D. Sargent, and T. Richmond Crystal structure of the nucleosome core particle at 2.8 Å resolution Nature 389 1997 251 260
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.2
Richmond, R.3
Sargent, D.4
Richmond, T.5
-
11
-
-
0021154312
-
Reverse gyrase - A topoisomerase which introduces positive superhelical turns into DNA
-
A. Kikuchi, and K. Asai Reverse gyrase - a topoisomerase which introduces positive superhelical turns into DNA Nature 309 1984 677 681
-
(1984)
Nature
, vol.309
, pp. 677-681
-
-
Kikuchi, A.1
Asai, K.2
-
12
-
-
0025885691
-
DNA binding by the archaeal histone HMf results in positive supercoiling
-
D. Musgrave, K. Sandman, and J. Reeve DNA binding by the archaeal histone HMf results in positive supercoiling Proc. Natl Acad. Sci. USA 88 1991 10397 10401
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 10397-10401
-
-
Musgrave, D.1
Sandman, K.2
Reeve, J.3
-
13
-
-
0030956537
-
DNA topology in hyperthermophilic archaea: Reference states and their variation with growth phase, growth temperature, and temperature stresses
-
P. Lopez-Garcia, and P. Forterre DNA topology in hyperthermophilic archaea: reference states and their variation with growth phase, growth temperature, and temperature stresses Mol. Microbiol. 23 1997 1267 1279
-
(1997)
Mol. Microbiol.
, vol.23
, pp. 1267-1279
-
-
Lopez-Garcia, P.1
Forterre, P.2
-
14
-
-
0022449038
-
Positively supercoiled DNA in a virus-like particle of an archaebacterium
-
M. Nadal, G. Mirambeau, P. Forterre, W.-D. Reiter, and M. Duguet Positively supercoiled DNA in a virus-like particle of an archaebacterium Nature 321 1986 256 258
-
(1986)
Nature
, vol.321
, pp. 256-258
-
-
Nadal, M.1
Mirambeau, G.2
Forterre, P.3
Reiter, W.-D.4
Duguet, M.5
-
16
-
-
0033980483
-
Negative constrained DNA supercoiling in archaeal nucleosomes
-
D. Musgrave, P. Forterre, and A. Slesarev Negative constrained DNA supercoiling in archaeal nucleosomes Mol. Microbiol. 35 2000 341 349
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 341-349
-
-
Musgrave, D.1
Forterre, P.2
Slesarev, A.3
-
17
-
-
0023001414
-
Sequence periodicities in chicken nucleosome core DNA
-
S. Satchwell, H. Drew, and A. Travers Sequence periodicities in chicken nucleosome core DNA J. Mol. Biol. 191 1986 659 675
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 659-675
-
-
Satchwell, S.1
Drew, H.2
Travers, A.3
-
18
-
-
0030595138
-
Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences
-
I. Ioshikhes, A. Bolshoy, K. Derenshteyn, M. Borodovsky, and E. Trifonov Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences J. Mol. Biol. 262 1996 129 139
-
(1996)
J. Mol. Biol.
, vol.262
, pp. 129-139
-
-
Ioshikhes, I.1
Bolshoy, A.2
Derenshteyn, K.3
Borodovsky, M.4
Trifonov, E.5
-
19
-
-
0001079085
-
Artificial nucleosome positioning sequences
-
T. Shrader, and D. Crothers Artificial nucleosome positioning sequences Proc. Natl Acad. Sci. USA 86 1989 7418 7422
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 7418-7422
-
-
Shrader, T.1
Crothers, D.2
-
20
-
-
0039837085
-
Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
-
A. Thastrom, P. Lowary, H. Widlund, H. Cao, M. Kubista, and J. Widom Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences J. Mol. Biol. 288 1999 213 229
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 213-229
-
-
Thastrom, A.1
Lowary, P.2
Widlund, H.3
Cao, H.4
Kubista, M.5
Widom, J.6
-
21
-
-
0034644767
-
Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution
-
K. Bailey, S. Pereira, J. Widom, and J. Reeve Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution J. Mol. Biol. 303 2000 25 34
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 25-34
-
-
Bailey, K.1
Pereira, S.2
Widom, J.3
Reeve, J.4
-
22
-
-
0017873321
-
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins
-
J. Garnier, D. Osguthorpe, and B. Robson Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins J. Mol. Biol. 120 1978 97 120
-
(1978)
J. Mol. Biol.
, vol.120
, pp. 97-120
-
-
Garnier, J.1
Osguthorpe, D.2
Robson, B.3
-
23
-
-
0019065166
-
Local hydrophobicity stabilizes secondary structures in proteins
-
M. Kanehisa, and T. Tsong Local hydrophobicity stabilizes secondary structures in proteins Biopolymers 19 1980 1617 1628
-
(1980)
Biopolymers
, vol.19
, pp. 1617-1628
-
-
Kanehisa, M.1
Tsong, T.2
-
24
-
-
0029115481
-
A sequence property approach to searching protein databases
-
U. Hobohm, and C. Sander A sequence property approach to searching protein databases J. Mol. Biol. 251 1995 390 399
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 390-399
-
-
Hobohm, U.1
Sander, C.2
-
26
-
-
0019887286
-
Periodicity in DNA primary structure is defined by secondary structure of the coded protein
-
V. Zhurkin Periodicity in DNA primary structure is defined by secondary structure of the coded protein Nucl. Acids Res. 9 1981 1963 1971
-
(1981)
Nucl. Acids Res.
, vol.9
, pp. 1963-1971
-
-
Zhurkin, V.1
-
27
-
-
0032554318
-
Correlations in protein sequences and property codes
-
O. Weiss, and H. Herzel Correlations in protein sequences and property codes J. Theoret. Biol. 190 1998 341 353
-
(1998)
J. Theoret. Biol.
, vol.190
, pp. 341-353
-
-
Weiss, O.1
Herzel, H.2
-
30
-
-
0021810948
-
The mosaic genome of warm-blooded vertebrates
-
G. Bernardi, B. Olofsson, J. Filipski, M. Zerial, J. Salinas, and G. Cuny The mosaic genome of warm-blooded vertebrates Science 228 1985 953 958
-
(1985)
Science
, vol.228
, pp. 953-958
-
-
Bernardi, G.1
Olofsson, B.2
Filipski, J.3
Zerial, M.4
Salinas, J.5
Cuny, G.6
-
31
-
-
0030479536
-
The origin of interspersed repeats in the human genome
-
A. Smit The origin of interspersed repeats in the human genome Curr. Opin. Genet. Dev. 6 1996 743 748
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 743-748
-
-
Smit, A.1
-
32
-
-
0037178777
-
Modifying gene expression programs by altering core promoter chromatin architecture
-
S. Lomvardas, and D. Thanos Modifying gene expression programs by altering core promoter chromatin architecture Cell 110 2002 261 271
-
(2002)
Cell
, vol.110
, pp. 261-271
-
-
Lomvardas, S.1
Thanos, D.2
-
34
-
-
0029833881
-
Isolation and chromosomal distribution of natural Z-DNA-forming sequences in Halobacterium halobium
-
J. Kim, and S. DasSarma Isolation and chromosomal distribution of natural Z-DNA-forming sequences in Halobacterium halobium J. Biol. Chem. 271 1996 19724 19731
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 19724-19731
-
-
Kim, J.1
Dassarma, S.2
-
35
-
-
0030043986
-
Genetic and topological analyses of the bop promoter of Halobacterium halobium: Stimulation by DNA supercoiling and non-B-DNA structure
-
C. Yang, J. Kim, E. Molinari, and S. DasSarma Genetic and topological analyses of the bop promoter of Halobacterium halobium: stimulation by DNA supercoiling and non-B-DNA structure J. Bacteriol. 178 1996 840-845
-
(1996)
J. Bacteriol.
, vol.178
, pp. 840-845
-
-
Yang, C.1
Kim, J.2
Molinari, E.3
Dassarma, S.4
-
36
-
-
0001818891
-
Measuring correlations in symbol sequences
-
H. Herzel, and I. Grosse Measuring correlations in symbol sequences Physica A 216 1995 518 542
-
(1995)
Physica a
, vol.216
, pp. 518-542
-
-
Herzel, H.1
Grosse, I.2
-
38
-
-
0028624664
-
Bending and curvature calculations in B-DNA
-
D. Goodsell, and R. Dickerson Bending and curvature calculations in B-DNA Nucl. Acids Res. 22 1994 5497 5503
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 5497-5503
-
-
Goodsell, D.1
Dickerson, R.2
|