-
1
-
-
0037223888
-
The evolutionary genomics of pathogen recombination
-
Awadalla, P. 2003. The evolutionary genomics of pathogen recombination. Nat. Rev. Genet. 4, 50-60.
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 50-60
-
-
Awadalla, P.1
-
2
-
-
0038047665
-
Hybrid origin of SIV in chimpanzees
-
Bailes, E., Gao, F., Bibollet-Ruche, F., et al. 2003. Hybrid origin of SIV in chimpanzees. Science 300, 1713.
-
(2003)
Science
, vol.300
, pp. 1713
-
-
Bailes, E.1
Gao, F.2
Bibollet-Ruche, F.3
-
3
-
-
1942531897
-
-
Available at:, Accessed July 6, 2008
-
Circulating Recombinant Forms. 2008. Available at: http://hiv-web. lanl.gov/content/hiv-db/CRFs/CRFs.html. Accessed July 6, 2008.
-
Circulating Recombinant Forms. 2008
-
-
-
4
-
-
0034791035
-
High-resolution haplotype structure in the human genome
-
Daly, M., Andeweg, A., Fouchier, R., et al. 2001. High-resolution haplotype structure in the human genome. Nat. Genet. 29, 229-232.
-
(2001)
Nat. Genet
, vol.29
, pp. 229-232
-
-
Daly, M.1
Andeweg, A.2
Fouchier, R.3
-
5
-
-
0024077312
-
Genetic exchange among natural isolates of bacteria: Recombination within the phoa locus of Escherichia coli
-
DuBose, R., Dykhuisen, D., and Hartl, D. 1988. Genetic exchange among natural isolates of bacteria: recombination within the phoa locus of Escherichia coli. Proc. Natl. Acad. Sci. USA 85, 7036-7040.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 7036-7040
-
-
DuBose, R.1
Dykhuisen, D.2
Hartl, D.3
-
6
-
-
10744226089
-
Recombination following superinfection by HIV-1
-
Fang, G., Weiser, B., Kuiken, C., et al. 2004. Recombination following superinfection by HIV-1. AIDS 18, 153-159.
-
(2004)
AIDS
, vol.18
, pp. 153-159
-
-
Fang, G.1
Weiser, B.2
Kuiken, C.3
-
7
-
-
15244355067
-
Kolmogorov-Smirnov test
-
2nd ed, Cambridge University Press, New York, NY
-
Flannery, W.H., Teukolsky, S.A., and Vertterling, W.T. 1992. Kolmogorov-Smirnov test, 617-620. In: Numerical Recipes in FORTRAN: The Art of Scientific Computing, 2nd ed., Cambridge University Press, New York, NY.
-
(1992)
Numerical Recipes in FORTRAN: The Art of Scientific Computing
, pp. 617-620
-
-
Flannery, W.H.1
Teukolsky, S.A.2
Vertterling, W.T.3
-
8
-
-
0026640859
-
Pheotype-associated env gene variation among eight related human immunodeficiency virus type 1 clones: Evidence for in vivo recombination and determinants of cytotropism outside the V3 doman
-
Groenink, M., Andeweg, A., Fouchier, R., et al. 1992. Pheotype-associated env gene variation among eight related human immunodeficiency virus type 1 clones: evidence for in vivo recombination and determinants of cytotropism outside the V3 doman. J. Virol. 66, 6175-6180.
-
(1992)
J. Virol
, vol.66
, pp. 6175-6180
-
-
Groenink, M.1
Andeweg, A.2
Fouchier, R.3
-
9
-
-
51349124783
-
-
Available at:, Accessed July 6
-
HIV Sequence Database. 2008. Available at: www.hiv.lanl.gov/content/ hiv-db/mainpage.html. Accessed July 6, 2008.
-
(2008)
HIV Sequence Database
-
-
-
10
-
-
0002459241
-
Probabilistic divergence measures for detecting interspecies recombination
-
Husmeier, D., and Wright, F. 2001. Probabilistic divergence measures for detecting interspecies recombination. Bioinformatics 17, 123-131.
-
(2001)
Bioinformatics
, vol.17
, pp. 123-131
-
-
Husmeier, D.1
Wright, F.2
-
11
-
-
18744378862
-
Detecting interspecific recombination with a pruned probabilistic divergence measure
-
Husmeier, D., Wright, F., and Milne, I. 2005. Detecting interspecific recombination with a pruned probabilistic divergence measure. Bioinformatics 21, 1797-1806.
-
(2005)
Bioinformatics
, vol.21
, pp. 1797-1806
-
-
Husmeier, D.1
Wright, F.2
Milne, I.3
-
12
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
-
(1980)
J. Mol. Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
13
-
-
0029063822
-
Biological and molecular characterization of subtype D, G, and A/D recombinant HIV-1 transmissions in Sweden
-
Leitner, T., Escanilla, D., Marquina, S., et al. 1995. Biological and molecular characterization of subtype D, G, and A/D recombinant HIV-1 transmissions in Sweden. Virology 209, 136-146.
-
(1995)
Virology
, vol.209
, pp. 136-146
-
-
Leitner, T.1
Escanilla, D.2
Marquina, S.3
-
14
-
-
51349141248
-
-
Available at:, Accessed July 6, 2008
-
Leitner, T., Korber, B., Daniels, M., et al. 2005. HIV-1 subtype and circulating recombinant form (CRF) reference sequences. Available at: www.hiv.lanl.gov/content/hiv-db/REVIEWS/RefSeqs2005/RefSeqs05.html. Accessed July 6, 2008.
-
(2005)
HIV-1 subtype and circulating recombinant form (CRF) reference sequences
-
-
Leitner, T.1
Korber, B.2
Daniels, M.3
-
15
-
-
33646154660
-
Recco: Recombination analysis using cost optimization
-
Maydt, J., and Lengauer, T. 2006. Recco: recombination analysis using cost optimization. Bioinformatics 22, 1064-1071.
-
(2006)
Bioinformatics
, vol.22
, pp. 1064-1071
-
-
Maydt, J.1
Lengauer, T.2
-
16
-
-
0034097468
-
TOPAL 2.0: Improved detection of mosaic sequences within multiple alignments
-
McGuire, G., and Wright, F. 2000. TOPAL 2.0: improved detection of mosaic sequences within multiple alignments. Bioinformatics 16, 130-134.
-
(2000)
Bioinformatics
, vol.16
, pp. 130-134
-
-
McGuire, G.1
Wright, F.2
-
17
-
-
0037279717
-
Bounds on the minimum number of recombination events in a sample history
-
Myers, S.R., and Griffiths, R.C. 2003. Bounds on the minimum number of recombination events in a sample history. Genetics 163, 375-394.
-
(2003)
Genetics
, vol.163
, pp. 375-394
-
-
Myers, S.R.1
Griffiths, R.C.2
-
18
-
-
0037470983
-
Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis
-
Paulson, I.T., Banerjei, L., Myers, G.S., et al. 2003. Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science 299, 1999-2002.
-
(2003)
Science
, vol.299
, pp. 1999-2002
-
-
Paulson, I.T.1
Banerjei, L.2
Myers, G.S.3
-
19
-
-
0036097812
-
Evaluation of methods for detecting recombination from data sequences: Empirical data
-
Posada, D. 2002. Evaluation of methods for detecting recombination from data sequences: empirical data. Mol. Biol. Evol. 19, 1198-1212.
-
(2002)
Mol. Biol. Evol
, vol.19
, pp. 1198-1212
-
-
Posada, D.1
-
20
-
-
0036183042
-
The effect of recombination on the accuracy of phylogeny estimation
-
Posada, D., and Crandall, K.R. 2002. The effect of recombination on the accuracy of phylogeny estimation. J. Mol. Evol. 54, 396-402.
-
(2002)
J. Mol. Evol
, vol.54
, pp. 396-402
-
-
Posada, D.1
Crandall, K.R.2
-
21
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson, D.R., and Foulds, L.R. 1981. Comparison of phylogenetic trees. Math. Biosci. 53, 131-147.
-
(1981)
Math. Biosci
, vol.53
, pp. 131-147
-
-
Robinson, D.R.1
Foulds, L.R.2
-
22
-
-
3142681466
-
A web-based genotyping resource for viral sequences
-
Rozanov, M., Plikat, U., Chappey, C., et al. 2004. A web-based genotyping resource for viral sequences. Nucleic Acids Res. 32, 654-659.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 654-659
-
-
Rozanov, M.1
Plikat, U.2
Chappey, C.3
-
24
-
-
0033793521
-
Consequences of recombination on traditional phylogenetic analysis
-
Schierup, M.H., and Hein, J. 2000. Consequences of recombination on traditional phylogenetic analysis. Genetics 156, 879-891.
-
(2000)
Genetics
, vol.156
, pp. 879-891
-
-
Schierup, M.H.1
Hein, J.2
-
25
-
-
0346252370
-
Variety of interpretation systems for human immunodeficiency virus type 1 genotyping: Confirmatory information or additional confusion?
-
Sturmer, M., Doerr, W., and Preiser, W. 2003. Variety of interpretation systems for human immunodeficiency virus type 1 genotyping: Confirmatory information or additional confusion? Curr. Drug Targets Infect. Disord. 3, 373-382.
-
(2003)
Curr. Drug Targets Infect. Disord
, vol.3
, pp. 373-382
-
-
Sturmer, M.1
Doerr, W.2
Preiser, W.3
-
26
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
27
-
-
0031892518
-
Phylogenetic profiles: A graphical method for detecting genetic recombination in homologous sequences
-
Weiller, G.F. 1998. Phylogenetic profiles: a graphical method for detecting genetic recombination in homologous sequences. Mol. Biol. Evol. 15, 326-335.
-
(1998)
Mol. Biol. Evol
, vol.15
, pp. 326-335
-
-
Weiller, G.F.1
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