-
1
-
-
10944231221
-
The number of recombination events in a sample history: Conflict graph and lower bounds
-
Bafna, V., and Bansal, V. 2004. The number of recombination events in a sample history: conflict graph and lower bounds. IEEE/ACM Trans. Comput. Biol. Bioinform. 1, 78-90.
-
(2004)
IEEE/ACM Trans. Comput. Biol. Bioinform
, vol.1
, pp. 78-90
-
-
Bafna, V.1
Bansal, V.2
-
2
-
-
33645987285
-
Inference about recombination from haplotype data: Lower bounds and recombination hotspots
-
Bafna, V., and Bansal, V. 2006. Inference about recombination from haplotype data: lower bounds and recombination hotspots. J. Comput. Biol. 13, 501-521.
-
(2006)
J. Comput. Biol
, vol.13
, pp. 501-521
-
-
Bafna, V.1
Bansal, V.2
-
3
-
-
13844266486
-
On the computational complexity of the rooted subtree prune and regraft distance
-
Bordewich, M., and Semple, C. 2004. On the computational complexity of the rooted subtree prune and regraft distance. Ann. Combin. 8, 409-423.
-
(2004)
Ann. Combin
, vol.8
, pp. 409-423
-
-
Bordewich, M.1
Semple, C.2
-
4
-
-
0038392950
-
Finding genes underlying risk of complex disease by linkage disequilibrium mapping
-
Clark, A.G. 2003. Finding genes underlying risk of complex disease by linkage disequilibrium mapping. Curr. Opin. Genet. Dev. 13, 296-302.
-
(2003)
Curr. Opin. Genet. Dev
, vol.13
, pp. 296-302
-
-
Clark, A.G.1
-
5
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376.
-
(1981)
J. Mol. Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
6
-
-
0346837920
-
Primal-dual approximation algorithms for integral flow and multicut in trees
-
Garg, N., Vazirani, V., and Yannakakis, M. 1997. Primal-dual approximation algorithms for integral flow and multicut in trees. Algorithmica 18, 3-20.
-
(1997)
Algorithmica
, vol.18
, pp. 3-20
-
-
Garg, N.1
Vazirani, V.2
Yannakakis, M.3
-
7
-
-
0030498194
-
Ancestral inference from samples of DNA sequences with recombination
-
Griffiths, R.C., and Marjoram, P. 1996. Ancestral inference from samples of DNA sequences with recombination. J. Comput. Biol. 3, 479-502.
-
(1996)
J. Comput. Biol
, vol.3
, pp. 479-502
-
-
Griffiths, R.C.1
Marjoram, P.2
-
8
-
-
15344339638
-
Optimal, efficient reconstruction of Root-Unknown phylogenetic networks with constrained and structured recombination
-
Gusfield, D. 2005. Optimal, efficient reconstruction of Root-Unknown phylogenetic networks with constrained and structured recombination. JCSS 70, 381-398.
-
(2005)
JCSS
, vol.70
, pp. 381-398
-
-
Gusfield, D.1
-
9
-
-
3242876395
-
Optimal, efficient reconstruction of phylogenetic networks with constrained recombination
-
Gusfield, D., Eddhu, S., and Langley, C. 2004a. Optimal, efficient reconstruction of phylogenetic networks with constrained recombination. J. Bioinform. Comput. Biol. 2, 173-213.
-
(2004)
J. Bioinform. Comput. Biol
, vol.2
, pp. 173-213
-
-
Gusfield, D.1
Eddhu, S.2
Langley, C.3
-
10
-
-
10044254311
-
The fine structure of galls in phylogenetic networks
-
Gusfield, D., Eddhu, S., and Langley, C. 2004b. The fine structure of galls in phylogenetic networks. INFORMS J. Comput. 16, 459-469.
-
(2004)
INFORMS J. Comput
, vol.16
, pp. 459-469
-
-
Gusfield, D.1
Eddhu, S.2
Langley, C.3
-
11
-
-
0025299784
-
Reconstructing evolution of sequences subject to recombination using parsimony
-
Hein, J. 1990. Reconstructing evolution of sequences subject to recombination using parsimony. Math. Biosci. 98, 185-200.
-
(1990)
Math. Biosci
, vol.98
, pp. 185-200
-
-
Hein, J.1
-
12
-
-
0027471670
-
A heuristic method to reconstruct the history of sequences subject to recombination
-
Hein, J. 1993. A heuristic method to reconstruct the history of sequences subject to recombination. J. Mol. Evol. 36, 396-405.
-
(1993)
J. Mol. Evol
, vol.36
, pp. 396-405
-
-
Hein, J.1
-
13
-
-
5044229945
-
-
Oxford University Press, New York
-
Hein, J., Schierup, M., and Wiuf, C. 2005. Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory. Oxford University Press, New York.
-
(2005)
Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory
-
-
Hein, J.1
Schierup, M.2
Wiuf, C.3
-
14
-
-
13844313862
-
Whole-genome patterns of common DNA variation in three human populations
-
Hinds, D., Stuve, L., Nilsen, G., et al. 2005. Whole-genome patterns of common DNA variation in three human populations. Science 307, 1072-1079.
-
(2005)
Science
, vol.307
, pp. 1072-1079
-
-
Hinds, D.1
Stuve, L.2
Nilsen, G.3
-
15
-
-
0022211482
-
Statistical properties of the number of recombination events in the history of a sample of DNA sequences
-
Hudson, R., and Kaplan, N. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164.
-
(1985)
Genetics
, vol.111
, pp. 147-164
-
-
Hudson, R.1
Kaplan, N.2
-
16
-
-
79959503826
-
The HapMap project
-
International HapMap Consortium
-
International HapMap Consortium. 2003. The HapMap project. Nature 426, 789-796.
-
(2003)
Nature
, vol.426
, pp. 789-796
-
-
-
17
-
-
79959524146
-
A haplotype map of the human genome
-
International HapMap Consortium
-
International HapMap Consortium. 2005. A haplotype map of the human genome. Nature 437, 1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
18
-
-
0024423668
-
Identification of the cystic fibrosis gene: Genetic analysis
-
Kerem, B., Rommens, J.M., Buchanan, J.A., et al. 1989. Identification of the cystic fibrosis gene: genetic analysis. Science 245, 1073-1080.
-
(1989)
Science
, vol.245
, pp. 1073-1080
-
-
Kerem, B.1
Rommens, J.M.2
Buchanan, J.A.3
-
19
-
-
0036725038
-
Gene mapping via ancestral recombination graph
-
Larribe, F., Lessard, S., and Schork, N.J. 2002. Gene mapping via ancestral recombination graph. Theor. Popul. Biol. 62, 215-229.
-
(2002)
Theor. Popul. Biol
, vol.62
, pp. 215-229
-
-
Larribe, F.1
Lessard, S.2
Schork, N.J.3
-
20
-
-
0347361674
-
Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data
-
Li, N., and Stephens, M., 2003. Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data. Genetics 165, 2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
21
-
-
30744479464
-
Minimum recombination histories by branch and bound
-
Lyngso, R., Song, Y.S., and Hein, J. 2005. Minimum recombination histories by branch and bound. Proc. WABI 3692, 239-250.
-
(2005)
Proc. WABI
, vol.3692
, pp. 239-250
-
-
Lyngso, R.1
Song, Y.S.2
Hein, J.3
-
22
-
-
0033358667
-
Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping
-
McPeek, M.S., and Strahs, A. 1999. Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping. Am. J. Hum. Genet. 65, 858-875.
-
(1999)
Am. J. Hum. Genet
, vol.65
, pp. 858-875
-
-
McPeek, M.S.1
Strahs, A.2
-
23
-
-
33751112507
-
Mapping trait loci using inferred ancestral recombination graphs
-
Minichiello, M., and Durbin, R. 2006. Mapping trait loci using inferred ancestral recombination graphs. Am. J. Hum. Genet. 79, 910-922.
-
(2006)
Am. J. Hum. Genet
, vol.79
, pp. 910-922
-
-
Minichiello, M.1
Durbin, R.2
-
24
-
-
0036177752
-
Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
-
Morris, A.P., Whittaker, J.C., and Balding, D.J. 2002. Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am. J. Hum. Genet. 70, 686-707.
-
(2002)
Am. J. Hum. Genet
, vol.70
, pp. 686-707
-
-
Morris, A.P.1
Whittaker, J.C.2
Balding, D.J.3
-
25
-
-
0037279717
-
Bounds on the minimum number of recombination events in a sample history
-
Myers, S.R., and Griffiths, R.C. 2003. Bounds on the minimum number of recombination events in a sample history. Genetics 163, 375-394.
-
(2003)
Genetics
, vol.163
, pp. 375-394
-
-
Myers, S.R.1
Griffiths, R.C.2
-
26
-
-
17344364213
-
DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene
-
Nickerson, D., Taylor, S., Weiss, K., et al. 1998. DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene. Nat. Genet. 19, 233-240.
-
(1998)
Nat. Genet
, vol.19
, pp. 233-240
-
-
Nickerson, D.1
Taylor, S.2
Weiss, K.3
-
27
-
-
0036468808
-
Linkage disequilibrium: What history has to tell us
-
Norborg, M., and Tavare, S., 2002. Linkage disequilibrium: what history has to tell us. Trends Genet. 18, 83-90.
-
(2002)
Trends Genet
, vol.18
, pp. 83-90
-
-
Norborg, M.1
Tavare, S.2
-
28
-
-
0034973984
-
High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence
-
Rannala, B., and Reeve, J.P. 2001. High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence. Am. J. Hum. Genet. 69, 159-178.
-
(2001)
Am. J. Hum. Genet
, vol.69
, pp. 159-178
-
-
Rannala, B.1
Reeve, J.P.2
-
29
-
-
0029741063
-
The future of genetic studies of complex human diseases
-
Risch, N., and Merikangas, K. 1996. The future of genetic studies of complex human diseases. Science 275, 1516-1517.
-
(1996)
Science
, vol.275
, pp. 1516-1517
-
-
Risch, N.1
Merikangas, K.2
-
30
-
-
35248892541
-
Parsimonious reconstruction of sequence evolution and haplotype blocks: Finding the minimum number of recombination events
-
Song, Y., and Hein, J. 2003a. Parsimonious reconstruction of sequence evolution and haplotype blocks: finding the minimum number of recombination events. Proc. WABI. 287-302.
-
(2003)
Proc. WABI
, pp. 287-302
-
-
Song, Y.1
Hein, J.2
-
31
-
-
16544370982
-
On the minimum number of recombination events in the evolutionary history of DNA sequences
-
Song, Y., and Hein, J. 2003b. On the minimum number of recombination events in the evolutionary history of DNA sequences. J. Math. Biol. 48, 160-186.
-
(2003)
J. Math. Biol
, vol.48
, pp. 160-186
-
-
Song, Y.1
Hein, J.2
-
32
-
-
29144460130
-
Efficient computation of close lower and upper bounds on the minimum number of needed recombinations in the evolution of biological sequences
-
Song, Y.S., Wu, Y., and Gusfield, D. 2005. Efficient computation of close lower and upper bounds on the minimum number of needed recombinations in the evolution of biological sequences. Bioinformatics 421, i413-i422.
-
(2005)
Bioinformatics
, vol.421
-
-
Song, Y.S.1
Wu, Y.2
Gusfield, D.3
-
33
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens, M., Smith, N., and Donnelly, P. 2001. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68, 978-989.
-
(2001)
Am. J. Hum. Genet
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.2
Donnelly, P.3
-
34
-
-
0023425198
-
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
-
Templeton, A.R., Boerwinkle, E., and Sing, C.F. 1987. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117, 343-351.
-
(1987)
Genetics
, vol.117
, pp. 343-351
-
-
Templeton, A.R.1
Boerwinkle, E.2
Sing, C.F.3
-
35
-
-
34250843719
-
Efficient computation of minimum reombination over genotypes (not haplotypes)
-
Wu, Y., and Gusfield, D. 2006. Efficient computation of minimum reombination over genotypes (not haplotypes). Proc. Life Sci. Soc. CSB 145-156.
-
(2006)
Proc. Life Sci. Soc. CSB
, pp. 145-156
-
-
Wu, Y.1
Gusfield, D.2
-
36
-
-
0034913468
-
Perfect phylogenetic networks with recombination
-
Wang, L., Zhang, K., and Zhang, L. 2001. Perfect phylogenetic networks with recombination. J. Comput. Biol. 8, 69-78.
-
(2001)
J. Comput. Biol
, vol.8
, pp. 69-78
-
-
Wang, L.1
Zhang, K.2
Zhang, L.3
-
37
-
-
15544365509
-
Coalescent-based association mapping and fine mapping of complex trait loci
-
Zollner, S., and Pritchard, J.K. 2005. Coalescent-based association mapping and fine mapping of complex trait loci. Genetics 169, 1071-1092.
-
(2005)
Genetics
, vol.169
, pp. 1071-1092
-
-
Zollner, S.1
Pritchard, J.K.2
|