Functional identification of an anti-σE factor from Thermus thermophilus HB8

Gene

Volumn 423, Issue 2, 2008, Pages 153-159

  Sakamoto, Keiko ^a   Agari, Yoshihiro ^a   Yokoyama, Shigeyuki ^a,b,c   Kuramitsu, Seiki ^a,d   Shinkai, Akeo ^a  

^a RIKEN SPring 8 Center   (Japan)

^b RIKEN YOKOHAMA INSTITUTE   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d OSAKA UNIVERSITY   (Japan)

Author keywords

Anti factor; Extracytoplasmic function (ECF) Factor; Gene regulation; Thermophile; Transcription

Indexed keywords

HOLOENZYME; RNA POLYMERASE; SIGMA FACTOR;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GENOME; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; ESCHERICHIA COLI; GENE ACTIVITY; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSCRIPTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; THERMUS THERMOPHILUS; TTHB212 GENE;

BACTERIAL PROTEINS; CLONE CELLS; DNA-DIRECTED RNA POLYMERASES; GENE DELETION; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; HOLOENZYMES; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; REGULON; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SIGMA FACTOR; THERMUS THERMOPHILUS; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; SIGE; THERMUS THERMOPHILUS;

EID: 51249103804     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.07.012     Document Type: Article

References (31)

1. Bashyam M.D., and Hasnain S.E. The extracytoplasmic function sigma factors: role in bacterial pathogenesis. Infect. Genet. Evol. 4 (2004) 301-308
2. Braun V., and Mahren S. Transmembrane transcriptional control (surface signalling) of the Escherichia coli Fec type. FEMS Microbiol. Rev. 29 (2005) 673-684
3. E with the cytoplasmic domain of its anti-σ RseA. Mol. Cell 11 (2003) 1067-1078
4. Campbell E.A., et al. A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria. Mol. Cell 27 (2007) 793-805
5. 28 RNA polymerase holoenzyme. Genes Dev. 12 (1998) 3123-3136
6. Ebright R.H. RNA polymerase: structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II. J. Mol. Biol. 304 (2000) 687-698
7. Gross C.A., et al. The functional and regulatory roles of sigma factors in transcription. Cold Spring Harb. Symp. Quant. Biol. 63 (1998) 141-155
8. Gruber T.M., and Gross C.A. Multiple sigma subunits and the partitioning of bacterial transcription space. Annu. Rev. Microbiol. 57 (2003) 441-466
9. Hashimoto Y., Yano T., Kuramitsu S., and Kagamiyama H. Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker. FEBS Lett. 506 (2001) 231-234
10. Helmann J.D. Anti-sigma factors. Curr. Opin. Microbiol. 2 (1999) 135-141
11. Helmann J.D. The extracytoplasmic function (ECF) sigma factors. Adv. Microb. Physiol. 46 (2002) 47-110
12. Hughes K.T., and Mathee K. The anti-sigma factors. Annu. Rev. Microbiol. 52 (1998) 231-286
13. Kanaujia S.P., et al. Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of DHNA synthetase from Geobacillus kaustophilus. Acta Crystallogr. F 63 (2007) 103-105
14. Kazmierczak M.J., Wiedmann M., and Boor K.J. Alternative sigma factors and their roles in bacterial virulence. Microbiol. Mol. Biol. Rev. 69 (2005) 527-543
15. Kigawa T., et al. Preparation of Escherichia coli cell extract for highly productive cell-free protein expression. J. Struct. Funct. Genomics 5 (2004) 63-68
16. Kuramitsu S., Hiromi K., Hayashi H., Morino Y., and Kagamiyama H. Pre-steady-state kinetics of Escherichia coli aspartate aminotransferase catalyzed reactions and thermodynamic aspects of its substrate specificity. Biochemistry 29 (1990) 5469-5476
17. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
18. 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174 (1992) 3843-3849
19. Lonetto M.A., Brown K.L., Rudd K.E., and Buttner M.J. Analysis of the Streptomyces coelicolor sigE gene reveals the existence of a subfamily of eubacterial RNA polymerase sigma factors involved in the regulation of extracytoplasmic functions. Proc. Natl. Acad. Sci. U. S. A. 91 (1994) 7573-7577
20. Missiakas D., and Raina S. The extracytoplasmic function sigma factors: role and regulation. Mol. Microbiol. 28 (1998) 1059-1066
21. Oshima T., and Imahori K. Description of Thermus thermophilus (Yoshida and Oshima) com. nov., a non-sporulating thermophilic bacterium from a Japanese thermal spa. Int. J. Syst. Bacteriol. 24 (1974) 102-112
22. Raivio T.L., and Silhavy T.J. Periplasmic stress and ECF sigma factors. Annu. Rev. Microbiol. 55 (2001) 591-624
23. Severinova E., Severinov K., and Darst S.A. Inhibition of Escherichia coli RNA polymerase by bacteriophage T4 AsiA. J. Mol. Biol. 279 (1998) 9-18
24. Shinkai A., Kira S., Nakagawa N., Kashihara A., Kuramitsu S., and Yokoyama S. Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J. Bacteriol. 189 (2007) 3891-3901
25. E holoenzyme from Thermus thermophilus HB8. J. Bacteriol. 189 (2007) 8758-8764
26. Storey J.D. A direct approach to false discovery rates. J. R. Statist. Soc. B 64 (2002) 479-498
27. Storey J.D., and Tibshirani R. Statistical significance for genomewide studies. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 9440-9445
28. Sweetser D., Nonet M., and Young R.A. Prokaryotic and eukaryotic RNA polymerases have homologous core subunits. Proc. Natl. Acad. Sci. U. S. A. 84 (1987) 1192-1196
29. Vassylyev D.G., et al. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 Å resolution. Nature 417 (2002) 712-719
30. Vassylyeva M.N., et al. Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus. Acta Crystallogr. D 58 (2002) 1497-1500
31. Wnendt S., Hartmann R.K., Ulbrich N., and Erdmann V.A. Isolation and physical properties of the DNA-directed RNA polymerase from Thermus thermophilus HB8. Eur. J. Biochem. 191 (1990) 467-472