Finding new pathway-specific regulators by clustering method using threshold standard deviation based on DNA chip data of Streptomyces coelicolor

Applied Microbiology and Biotechnology

Volumn 80, Issue 4, 2008, Pages 709-717

  Yang, Yung Hun ^a   Kim, Ji Nu ^a   Song, Eunjung ^a   Kim, Eunjung ^a   Oh, Min Kyu ^b   Kim, Byung Gee ^a  

^a Seoul National University   (South Korea)

^b Korea University   (South Korea)

Author keywords

Clustering; DNA chip; Pathway specific regulator; Standard deviation; Streptomyces coelicolor

Indexed keywords

ANTIBIOTICS; BIOASSAY; BIOCHIPS; CHLORINE COMPOUNDS; FLOW OF SOLIDS; GENES; HEALTH; MICROARRAYS; NUCLEIC ACIDS; ORGANIC ACIDS; RNA; STANDARDS; STATISTICS;

ACTINORHODIN; ANTIBIOTIC PRODUCTION; ANTIBIOTICS PRODUCTION; BIOSYNTHETIC GENES; CELLULAR EVENTS; CLUSTERING; CLUSTERING ANALYSIS; CLUSTERING METHODS; DNA CHIP; DNA CHIPS; EXPRESSION DATA; EXPRESSION PATTERNS; FILTERING METHODS; GENE CLUSTERING; MESSENGER RIBONUCLEIC ACID; MRNA EXPRESSION; OVER-EXPRESSION; PATHWAY-SPECIFIC REGULATOR; SELECTION RULES; STANDARD DEVIATION; STREPTOMYCES COELICOLOR;

CLUSTER ANALYSIS;

ACTINORHODINE; ANTIBIOTIC AGENT; BACTERIAL PROTEIN; MESSENGER RNA; PROTEIN SC01699; PROTEIN SCO0608; PROTEIN SCO6808; UNCLASSIFIED DRUG;

BACTERIUM; CLUSTER ANALYSIS; DNA; GENE EXPRESSION; RNA; SPORULATION;

ARTICLE; BACTERIAL GENE; CONTROLLED STUDY; DNA MICROARRAY; GENE CLUSTER; GENE DELETION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE MAPPING; GENE OVEREXPRESSION; NONHUMAN; REGULATOR GENE; SPOROGENESIS; STREPTOMYCES COELICOLOR;

ANTHRAQUINONES; ANTI-BACTERIAL AGENTS; BACTERIAL PROTEINS; CLUSTER ANALYSIS; GENES, REGULATOR; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PRODIGIOSIN; SEQUENCE DELETION; STREPTOMYCES COELICOLOR;

STREPTOMYCES COELICOLOR;

EID: 50849128158     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1574-3     Document Type: Article

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