QTL mapping of agronomic traits using an RIL population derived from a cross between temperate japonica cultivars in rice (Oryza sativa L.)

Breeding Science

Volumn 58, Issue 3, 2008, Pages 271-279

  Kwon, Soo Jin ^a   Cho, Young Chan ^a   Kwon, Soon Wook ^a   Oh, Chang Sik ^b   Suh, Jung Pil ^a   Shin, Young Seop ^a   Kim, Yeon Gyu ^a   Holligan, Dawn ^c   Wessler, Susan R ^c   Hwang, Hung Goo ^a   Ahn, Sang Nag ^b  

^a National Institute of Animal Science   (South Korea)

^b Chungnam National University   (South Korea)

^c UNIVERSITY OF GEORGIA   (United States)

Author keywords

MITEs; Molecular map; QTL; Rice; Temperate japonica

Indexed keywords

ACARI; JAPONICA; ORYZA SATIVA;

EID: 50849100164     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.271     Document Type: Article

References (32)

1. Ali, M.L., M.S. Pathan, J. Zhang, G. Bai, S. Sarkarung and H.T. Nguyen (2000) Mapping QTLs for root traits in a recombinant inbred population from two indica ecotypes in rice. Theor. Appl. Genet. 101: 756-766.
2. Aluko, G., C. Martinez, J. Tohme, C. Castano, C. Bergman and J.H. Oard (2004) QTL mapping of grain quality traits from the interspecific cross Oryza sativa x O. glaberrima. Theor. Appl. Genet. 109: 630-639.
3. Basten, C.J., B.S. Weir and Z.B. Zeng (1997) QTL Cartographer: a Reference Manual and Tutorial for QTL Mapping. Department of Statistics, North Carolina State University, Raleigh, NC, USA.
4. Casa, A.M., C. Brouwer, A. Nagel, L. Wang, Q. Zhang, S. Kresovich and S.R. Wessler (2000) The MITE family Heartbreaker (Hbr): Molecular markers in maize. Proc. Natl. Acad. Sci. USA 97: 10083-10089.
5. Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z.H. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley (1994) Saturated molecular map of the rice genome based on an intraspecific backcross population. Genetics 138: 1251-1274.
6. Cho, Y.G., S.R. McCouch, M. Kuiper, M.R. Kang, J. Pot, J.T.M. Groenen and M.Y. Eun (1998) Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.). Theor. Appl. Genet. 97: 370-380.
7. Fujino, K., H. Sekiguchi, T. Sato, H. Kikuchi, Y. Nonoue, Y. Takeuchi, T. Ando, S.Y. Lin and M. Yano (2004) Mapping of quantitative trait loci controlling low-temperature germinability in rice (Oryza sativa L.). Theor. Appl. Genet. 108: 794-799.
8. Kim, K.H., S.Y. Cho, H.P. Moon and H.C. Choi (1994) Breeding strategy for improvement and diversification of grain quality in rice. Korean J. Breed. 26 (Supp. 2): 3-19 (in Korean).
9. Kobayashi, A., B. Genliang, Y. Shenghai and K. Tomita (2007) Detection of quantitative trait loci for white-back and basal-white kernels under high temperature stress in japonica rice varieties. Breed. Sci. 57: 107-116.
10. Kosambi, D.D. (1944) The estimation of map distance from recombination values. Ann. Eugen. 12: 172-175.
11. Kwon, S.J., D.H. Kim, M.H. Lim, Y. Long, J.L. Meng, K.B. Lim, J.A. Kim, J.S. Kim, M. Jin, H.I. Kim, S.N. Ahn, S.R. Wessler, T.J. Yang and B.S. Park (2007) Terminal repeat retrotransposon in miniature (TRIM) as DNA markers in Brassica relatives. Mol. Genet. Genomics 278: 361-370.
12. Lander, E.S., P. Green, J. Abrahamson, A. Barlow, M.J. Daly, S.E. Lincoln and L. Newbug (1987) Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
13. Li, Z., P. Mu, C. Li, H. Zhang, Z. Li, Y. Gao and X. Wang (2005) QTL mapping of root traits in a doubled haploid population from a cross between upland and lowland japonica rice in three environments. Theor. Appl. Genet. 110: 1244-1252.
14. Lu, C., L. Shen, Z. Tan, Y. Xu, P. He, Y. Chen and L. Zhu (1997) Comparative mapping of QTLs for agronomic traits of rice across environments using a doubled-haploid population. Theor. Appl. Genet. 94: 145-150.
15. McCouch, S.R., L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing et al. (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
16. Mei, H.W., Z.K. Li, Q.Y. Shu, L.B. Guo, Y.P. Wang, X.Q. Yu, C.S. Ying and L.J. Luo (2005) Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two backcross populations. Theor. Appl. Genet. 110: 649-659.
17. National Institute of Crop Science (1988) Annual report on agricultural research in rice (in Korean). p. 866.
18. Nelson, J.C. (1997) Qgene: software for marker-based genomic analysis and breeding. Mol. Breed. 3: 239-245.
19. Redoña, E.D. and D.J. Mackill (1998) Quantitative trait locus analysis for rice panicle and grain characteristics. Theor. Appl. Genet. 96: 957-963.
20. Rural Development Administration (1975) A handbook on cultivars of major crop (in Korean). p. 469
21. Suh, J.P., Y.C. Cho, S.J. Kwon, I.S. Choi, H.C. Hong, Y.G. Kim, S.N. Ahn and H.G. Hwang (2006) identification of QTLs for grain quality on RIL population derived from a cross between japonica rices. Korean J. Breed. 38: 105-112.
22. Tabata, M., H. Hirabayashi, Y. Takeuchi, I. Ando, Y. Iida and R. Ohsawa (2007) Mapping of quantitative trait loci for the occurrence of white-back kernels associated with high temperatures during the ripening period of rice (Oryza sativa L.). Breed. Sci. 57: 47-52.
23. Takeuchi, Y., H. Hayasaka, B. Chiba, I. Tanaka, T. Shimano, M. Yamagishi, K. Nagano, T. Sasaki and M. Yano (2001) Mapping quantitative trait loci controlling cool-temperature tolerance at booting stage in temperate japonica rice. Breed. Sci. 51: 191-197.
24. Temnykh, S., W.D. Park, N. Ayer, S. Cartinhour, N. Hauck, L. Lipovich, Y.G. Cho, T. Ishii and S.R. McCouch (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L): Frequency, length variation, transposon association, and genetic marker potential. Theor. Appl. Genet. 100: 697-712.
25. Tian, F., Z. Zhu, B. Zhang, L. Tan, Y. Fu, X. Wang and C.Q. Sun (2006) Fine mapping of a quantitative trait locus for grain number per panicle from wild rice (Oryza rufipogon Griff.). Theor. Appl. Genet. 113: 619-629.
26. Vos, P., K. Hogers, M. Bleeker, M. Reijans, T. Van de Lee, M. Hornes, B.A. Frijters, J. Pot, J. Peleman, M. Kuiper and M. Zabeau (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
27. Wada, T., Y. Uchimura, T. Ogata, M. Tsubone and Y. Matsue (2006) Mapping of QTLs for physicochemical properties in japonica rice. Breed. Sci. 56: 253-260.
28. Wessler, S.R. (2006) Eukaryotic transposon element; Teaching old genome new tricks. In: Caporale, L. (ed.) The Implicit Genome, Oxford Univ. Press, USA, pp. 138-162.
29. Xiao, J., J. Li, L. Yuan and S.D. Tanksley (1996) Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross. Theor. Appl. Genet. 92: 230-244.
30. Yamagishi, M., Y. Takeuchi, I. Kono and M. Yano (2002) QTL analysis for panicle characteristics in temperate japonica rice. Euphytica 128: 219-224.
31. Yano, M., Y. Katayose, M. Ashikari, U. Yamanouchi, L. Monna, T. Fuse, T. Baba, K. Yamamoto, Y. Umehara, Y. Nagamura and T. Sasaki (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12: 2473-2483.
32. Yoon, D.B., K.H. Kang, H.J. Kim, H.G. Ju, S.J. Kwon, J.P. Suh, O.Y. Jeong and S.N. Ahn (2006) Mapping of quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O. sativa cultivar Hwaseongbyeo. Theor. Appl. Genet. 112: 1052-1062.