Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O. sativa japonica cultivar Hwaseongbyeo

Theoretical and Applied Genetics

Volumn 112, Issue 6, 2006, Pages 1052-1062

  Yoon, D B ^a   Kang, K H ^b   Kim, H J ^a   Ju, H G ^a   Kwon, S J ^b   Suh, J P ^a   Jeong, O Y ^a   Ahn, S N ^a  

^a Chungnam National University   (South Korea)

^b National Institute of Animal Science   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; GENES; GENETIC ENGINEERING; GRAIN SIZE AND SHAPE; PROTEINS;

AGRONOMIC TRAITS; INTROGRESSION (BACKCROSS); ORYZA GRANDIGLUMIS; QUALITATIVE TRAIT LOCUS (QTL) ANALYSIS; WILD ALLELES;

PLANTS (BOTANY);

MICROSATELLITE DNA;

ARTICLE; CHROMOSOME MAP; CLASSIFICATION; COMPARATIVE STUDY; CROSS BREEDING; GENETICS; GROWTH, DEVELOPMENT AND AGING; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE;

CHROMOSOME MAPPING; CROSSES, GENETIC; MICROSATELLITE REPEATS; ORYZA SATIVA; PHENOTYPE; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; QUANTITATIVE TRAIT LOCI;

AGRONOMY; ALLELES; AMYLOSE; CHROMOSOMES; GENETICS; GENOTYPES; GRAIN; PHENOTYPES; PLANTS; RICE; VARIETIES;

JAPONICA; ORYZA; ORYZA GRANDIGLUMIS; ORYZA SATIVA;

EID: 33645417567     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0207-4     Document Type: Article

References (51)

1. Ahn SN, Kim YK, Hong HC, Han SS, Kwon SJ, Choi HC, Moon HP, McCouch SR (2000) Molecular mapping of a new gene for resistance to rice blast. Euphytica 116:17-22
2. Ahn SN, Kwon SJ, Suh JP, Kang KH, Kim HJ, Song MT, Hwang HG, Moon HP (2001) Identification of introgressions in a backcross progeny derived from the cross between Oryza sativa and O grandiglumis. Korean J Breed 33:318-323
3. Ahn SN, Kwon SJ, Suh JP, Kang KH, Kim HJ, Hwang HG, Moon HP (2003) Introgression for agronomic from O grandiglumis into rice, O sativa. In: Mew TW, Brar DS, Peng S, Dawe D, Hardy B (eds) Rice science: innovations and impact for livelihood. IRRI, Los Banos, pp 265-274
4. Akimoto M, Morishima H (2003) Genetic population structures of Oryza glumaepatula and O. grandiglumis distributed in Amazon flood area. In: Khush GS, Brar DS, Hardy B (eds) Advances in rice genetics. IRRI, Los Banos, pp 126-127
5. Brar DS, Khush GS (1997) Alien introgression in rice. Plant Mol Biol 35:35-47
6. Brondani C, Rangel PHN, Brondani RPV, Ferreira ME (2002) QTL mapping and introgression of yield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellite markers. Theor Appl Genet 104:1192-1203
7. Cai HW, Morishima H (2002) QTL clusters reflect character associations in wild and cultivated rice. Theor Appl Genet 104:1217-1228
8. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch SR, Tanksley SD (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138:1251-1274
9. Cho YG, Eun MY, McCouch SR, Chae YA (1994) The semidwarf gene, sd-1, of rice (Oryza sativa L). II. Molecular mapping and marker-assisted selection. Theor Appl Genet 89:54-59
10. Frary A, Nesbitt TC, Frary S, Grandillo S, van der Knapp E, Cong B, Lui J, Meiler J, Elber R, Alpert KB, Tanksley SD (2000) fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science 289:85-88
11. Harushima Y, Kurata N, Yano M, Nagamura Y, Sasaki T, Minobe Y, Nakagara M (1996) Detection of segregation distortions in an indica-japonica rice cross using a high-resolution molecular map. Theor Appl Genet 92:145-190
12. Harushima Y, Nakagahra M, Yano M, Sasaki M, Sasaki T, Kurata N (2002) Diverse variation of reproductive barriers in three intraspecific rice crosses. Genetics 160:313-322
13. Heinrichs EA, Medrano FG, Rapusas HR (1985) Genetic evaluation for insect resistance in rice. International Rice Research Institute, Manila
14. Hittalmani S, Huang N, Courtois B, Venuprasad R, Shashidhar HE, Zhuang JY, Zheng KL, Liu GF, Wang GC, Sidhu JS, Srivantaneeyakul S, Singh VP, Bagali PG, Prasanna HC, McLaren G, Khush GS (2003) Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia. Theor Appl Genet 107:679-690
15. International Rice Genome Sequencing Project (IRGSP) (2005) The map-based sequence of the rice genome. Nature 436:793-800
16. Ishii T, Brar DS, Multani DS, Khush GS (1994) Molecular tagging of genes for brown planthopper resistance and earliness introduced from Oryza australiensis into cultivated rice, O. sativa. Genome 37:217-221
17. Ishimaru K (2003) Identification of a locus increasing rice yield and physiological analysis of its function. Plant Physiol 133:1083-1090
18. Jena KK, Kochert G (1991) Restriction fragment fragment polymorphism analysis of CCDD genome species of the genus Oryza L. Plant Mol Biol 5:109-118
19. Jena KK, Khush GS, Kochert G (1992) RFLP analysis of rice (Oryza sativa L) introgression lines. Theor Appl Genet 84:608-616
20. Jena KK, Pasalu IC, Rao YK, Varalaxmi Y, Krishnaiah K, Khush GS, Kochert G (2003) Molecular tagging of a gene for resistance to brown planthopper in rice (Oryza sativa L). Euphytica 129:81-88
21. Juliano BO (1971) A simplified assay for milled-rice amylose. Cereal Sci Today 16:334-360
22. Kim YK, Kim YJ, Choi HC, Han SS (1995) Inheritance of leaf blast reactions to four races of blast fungus in segregating populations of eight rice crosses (In Korean). RDA J Agric Sci 37:283-298
23. Kwon SJ, Ahn SN, Hong HC, Cho YC, Suh JP, Kim YK, Kang KH, Han SS, Choi HC, Moon HP, Hwang HG (2002) Identification of DNA markers linked to resistance genes to rice blast (Pyricularia grisea Sacc). Korean J Breed 34:105-110
24. Li JM, Thomson M, McCouch SR (2004) Fine mapping of a grainweight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics 168:2187-2195
25. Liu G, Lu G, Zeng L, Wang G-L (2002) Two broad-spectrum blast resistance genes, Pi9(t) and Pi2(t), are physically linked on rice chromosome 6. Mol Genet Genomics 267:472-480
26. McCouch SR, Doerge RW (1995) QTL mapping in rice. Trends Genet 11:482-487
27. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L). DNA Res 9:199-207
28. Mei HW, Luo LJ, Ying CS, Wang YP, Yu XQ, Guo LB, Paterson AH, Li ZK (2003) Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two testcross populations. Theor Appl Genet 107:89-101
29. 2 population evaluated in an upland environment. Theor Appl Genet 102:41-52
30. Nelson JC (1997) QGENE: software for marker-based genome analysis and breeding. Mol Breed 3:239-245
31. Nguyen BD, Brar DS, Bui BC, Nguyen TV, Pham LN, Nguyen HT (2003) Identification and mapping of the QTL for aluminum tolerance introgressed from the new source, Oryza rufipogon Griff. into indica rice (O. sativa L). Theor Appl Genet 106:583-593
32. Panaud O, Chen X, McCouch SR (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L). Mol Gen Genet 252:597-607
33. Paterson AH, DeVerna JW, Lanini B, Tanksley SD (1990) Fine mapping of quantitative trait loci using selected overlapping recombinant chromosomes in an interspecies cross of tomato. Genetics 124:735-742
34. Ryu JD, Yeh WH, Han SS, Lee YH, Lee EJ (1987) Regional and annual fluctuation of races of Pyricularia oryzae during 1977-1985 in Korea. Korean J Plant Pathol 3:174-179
35. Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, Swapan D, Ishiyama K, Saito T, Kobayashi M, Khush GS, Kitano H, Matsuoka M (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416:701-702
36. Septiningsih EM, Prasetiyono J, Lubis ET, Tai TH, Tjubaryat T, Moeljopawiro S, McCouch SR (2003a) Molecular marker detection of rice (Oryza sativa L) plant architecture under temperate and tropical climates. Theor Appl Genet 107:1350-1356
37. Septiningsih EM, Trijatmiko KR, Moeljopawiro S, McCouch SR (2003b) Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O rufipogon. Theor Appl Genet 107:1419-1432
38. Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205-233
39. Temnykh S, Cartinhour S, Park W, Ayres N, Hauck N, Lipovich L, Cho YG, McCouch SR (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L). Theor Appl Genet 100:697-712
40. Temnykh S, De Clerck G, Lukashova A, Lipovitch L, Cartinhour S, McCouch SR (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441-1452
41. Thomson MJ, Tai TH, McClung AM, Lai XH, Hinga ME, Lobos KB, Xu Y, Martinez CP, McCouch SR (2003) Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor Appl Genet 107:479-493
42. Vaughan DA, Morishima H, Kadowaki K (2003) Diversity in the Oryza genus. Curr Opin Plant Biol 6:139-146
43. Wang ZY, Second G, Tanksley SD (1992) Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor Appl Genet 83:565-581
44. Williams VR, Wu WT, Tsai HY, Bates HG (1958) Varietal differences in amylase content of rice starch. J Agric Food Chem 8:47-48
45. Xiao J, Li J, Yuan L, Tanksley SD (1996) Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific cross. Theor Appl Genet 92:230-244
46. Xiao J, Li J, Grandillo S, Ahn SN, Yuan L, Tanksley SD, McCouch SR (1998) Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics 150:899-909
47. 2 population of a cross between Oryza sativa and O rufipogon. Theor Appl Genet 98:243-251
48. 2, backcross, doubled haploid, and recombinant inbred populations in rice (Oryza sativa L). Mol Gen Genet 253:535-545
49. Yano M, Sasaki T (1997) Genetic and molecular dissection of quantitative traits in rice. Plant Mol Biol 35:145-153
50. Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T (2000) Hdl, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12:2473-2484
51. Yu GJ, Kwak TS, Kang KH, Moon HP (1997) Efficiency of backcrossing and ovule culture in an interspecific cross between O sativa L and O grandiglumis. Prod Korean J Breed 29:448-452