Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross

Theoretical and Applied Genetics

Volumn 92, Issue 2, 1996, Pages 230-244

  Xiao, J ^a   Li, J ^b   Yuan, L ^b   Tanksley, S D ^a  

^a Department of Population Medicine and Diagnostic Sciences   (United States)

^b Hunan Hybrid Rice Research Center   (China)

Author keywords

Molecular markers; QTLs; Recombinant inbred population; Rice; Subspecies

Indexed keywords

EID: 0029812754     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00223380     Document Type: Article

References (47)

1. Abler BSB, Edwards MD, Stuber CW (1991) Isoenzymatic identification of quantitative trait loci in crosses of elite maize inbreds. Crop Sci 31:267-274
2. Ahn SN, Tanksley SD (1993) Comparative linkage maps of the rice and maize genomes. Proc Natl Acad Sci USA 90.7980-7984
3. Ahn SN, Anderson JA, Sorrells ME, Tanksley SD (1993 a) Homoeologous relationships of rice, wheat and maize chromosomes. Mol Gen Genet 241:483-490
4. Ahn SN, Bollich CN, AM McClung, Tanksley SD (1993 b) RFLP analysis of genomic regions associated with cooked-kernel elongation in rice. Theor Appl Genet 87:27-32
5. Beavis WD, Grant D, Albertsen M, Fincher R (1991) Quantitative trait loci for plant height in four maize populations and their associations with qualitative genetic loci. Theor Appl Genet 83:141-145
6. 4. progeny from maize. Crop Sci 34:882-896
7. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, PC Ronald, Harrington SE, Second G, McCouch SR, Tanksley SD (1994) Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138:1251-1274
8. Champoux MC, Wang G, Sarkarung S, Mackill DJ, O'Toole JC, Huang N, McCouch SR (1995) Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet 90:968-981
9. Cho YG, Eun MY, McCouch SR, Chae YA (1994) The semidwarf gene, sd-1, of rice (Oryza sativa L.). II. Molecular mapping and marker-assisted selection. Theor Appl Genet 89:54-59
10. Data Description, Inc (1992) Data Desk: Statistics Guide. Data Description, Inc., Ithaca, N.Y.
11. Doebley J, Bacigalupo A, Stec A (1994) Inheritance of kernel weight in two maize-teosinte hybrid populations: implications for crop evolution. J Hered 85:191-195
12. Edwards MD, Helentjaris T, Wright S, Stuber CW (1992) Molecularmarker-facilitated investigations of quantitative trait loci in maize. 4. Analysis based on genome saturation with isozyme and restriction fragment length polymorphism markers. Theor Appl Genet 83:765-774
13. 10) × Atlas. Agron J 47:276-280
14. Hayes PM, Liu BH, Knapp SJ, Chen F, Jones B, Blake T, Franckowiak J, Rasmusson D, Sorrells M, Ullrich SE, Wesenberg D, Kleinhofs A (1993) Quantitative trait locus effects and environmental interaction in a sample of North American barley germplasm. Theor Appl Genet 87:392-401
15. Koester RP, Sisco PH, Stuber CW (1993) Identification of quantitative trait loci controlling days to flowering and plant height in two near-isogenic lines of maize. Crop Sci 33:1209-1216
16. Kosambi DD (1994) The estimation of map distances from recombination values. Ann Eugen 12:172-175
17. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
18. Li Z, Pinson SRM, Stansel JW, Park WD (1995) Identification of quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L). Theor Appl Genet 91:374-381
19. Lincoln S, Daly M, Lander E (1992 a) Constructing genetics maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report, 3rd edn.
20. Lincoln S, Daly M, Lander E (1992 b) Mapping genes controlling quantitative traits with MAPMAKER/QTL 1.1 Whitehead Institute Technical Report, 2nd edn.
21. Manly KF (1993) A Macintosh program for storage and analysis of experimental genetic mapping data. Mamm Genome 4:303-313
22. McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman RW, Tanksley SD (1988) Molecular mapping of rice chromosomes. Theor Appl Genet 76:815-829
23. Olufowote JO (1994) Analysis of chromosomal regions associated with some quantitative traits in barley using restriction fragment length polymorphism (RFLP) markers. PhD dissertation, Cornell University, Ithaca, New York, pp 45-46
24. Paterson AH, Lander ES, Hewitt JD, Peterson S, Lincoln SE, Tanksley SD (1988) Resolution of quantitative traits into Mendelian factors by using a complete RFLP linkage map. Nature 335:721-726
25. Paterson AH, Damon S, Hewitt JD, Zamir D, Rabinowitch HD, Lincoln SE, Lander ES, Tanksley SD (1991) Mendelian factors underlying quantitative traits in tomato: comparison across species, generations, and environments. Genetics 127:181-197
26. Rasmussen JM (1935) Studies on the inheritance of quantitative characters in Pisun: I. Preliminary note on the genetics of flowering. Hereditas 20:161-180
27. Robertson DS (1985) A possible technique for isolating genic DNA for quantitative traits in plants. J Theor Biol 117:1-10
28. Saito A, Yano M, Kishimoto N, Nakagahra M, Yoshimura A, Satito K, Kuhara S, Ukai Y, Kawase M, Nagamine T, Yoshimura S, Ideta O, Ohsawa R, Hayano Y, Iwata N, Sugiura M (1991) Linkage map of restriction fragment length polymorphism loci in rice. Japan J Breed 41:665-670
29. Sax K (1923) The association of size differences with seed coat pattern and pigmentation in Phaseolus vulgaris. Genetics 8:552-560
30. SAS Institute, Inc (1988) SAS Users Guide: Statistic. SAS Institute, Cary, N.C.
31. Schön CC, Lee M, Melchinger AE, Guthrie WD, Woodman WL (1993) Mapping and characterization of quantitative trait loci affecting resistance against second-generation European corn borer in maize with the aid of RFLPs. Heredity 70: 648-659
32. Schön CC, Melchinger AE, Boppenmaier J, Brunklaus-Jung E, Herrmann RG, Seitzer JF (1994) RFLP mapping in maize: quantitative trait loci affecting testcross performance of elite European flint lines. Crop Sci 34:378-389
33. Siripoonwiwat W (1995) Application of restriction fragment length polymorphism (RFLP) markers in the analysis of chromosomal regions associated with some quantitative traits for hexaploid oat improvement. Msc thesis, Cornell University, Ithaca, New York
34. Stuber CW, Lincoln SE, Wolff DW, Helentjaris T, Lander ES (1992) Identification of genetic factors contributing to heterosis in a hybrid from two elite maize inbred lines using molecular markers. Genetics 132:823-839
35. Tanksley SD (1993) Mapping polygenes. Annu Rev Genet 27:205-233
36. Tanksley SD, Young ND, Paterson AH, Bonierbale MW (1989) RFLP mapping in plant breeding: new tools for an old science. Biotechnology 7:247-264
37. Thoday JM (1961) Location of polygenes. Nature 191: 368-370
38. Van Deynze AE, Nelson JC, O'Donoughue LS, Ahn SN, Siripoonwiwat W, Harrington SE, Yglesias ES, Braga DP, McCouch SR, Sorrells ME (1995 a) Comparative mapping in grasses. Oat relationships. Mol Gen Genet (in press)
39. Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, McCouch SR, Sorrells ME (1995 b) Comparative mapping in grasses. Wheat relationships. Mol Gen Genet (in press)
40. Veldboom LR, Lee M (1994) Molecular-marker-facilitated studies of morphological traits in maize. II. Determination of QTLs for grain yield and yield components. Theor Appl Genet 89: 451-458
41. Veldboom LR, Lee M, Woodman WL (1994) Molecular-marker-facilitated studies in an elite maize population. I. Linkage analysis and determination of QTL for morphological traits. Theor Appl Genet 88:7-16
42. Wang G, Mackill DJ, Bonman JM, McCouch SR, Champoux MC, Nelson RJ (1994) RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 136:1421-1434
43. 1 hybrids between indica and japonica and their relationship with their parents. Hybrid Rice 9:5-9
44. Xiao J, Li J, Yuan L, Tanksley SD (1995) Dominance is the major genetic basis of heterosis in rice as revealed by QTL analysis using molecular markers. Genetics 140:745-754
45. Xu YB, Shen ZT, Xu JC, Chen Y, Zhu LH (1993) Mapping quantitative trait loci via restriction fragment length polymorphism markers in rice. Rice Genet Newslett 10:135-138
46. Xu YB, Shen ZT, Chen Y, Zhu LH (1995) Molecular mapping for quantitative trait loci controlling yield component characters using a maximum likelihood method in rice(Oryza sativa L.). Acta Genet Sini 22:46-52
47. Young ND, Tanksley SD (1989) Restriction fragment length polymorphism maps and the concept of graphical genotypes. Theor Appl Genet 77:95-101