-
1
-
-
0032483510
-
Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
-
Ishiura, M., S. Kutsuna, S. Aoki, H. Iwasaki, C. R. Andersson, A. Tanabe, S. S. Golden, C. H. Johnson, and T. Kondo. 1998. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science. 281:1519-1523.
-
(1998)
Science
, vol.281
, pp. 1519-1523
-
-
Ishiura, M.1
Kutsuna, S.2
Aoki, S.3
Iwasaki, H.4
Andersson, C.R.5
Tanabe, A.6
Golden, S.S.7
Johnson, C.H.8
Kondo, T.9
-
2
-
-
0033104504
-
Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria
-
Iwasaki, H., Y. Taniguchi, M. Ishiura, and T. Kondo. 1999. Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria. EMBO J. 18:1137-1145.
-
(1999)
EMBO J
, vol.18
, pp. 1137-1145
-
-
Iwasaki, H.1
Taniguchi, Y.2
Ishiura, M.3
Kondo, T.4
-
3
-
-
0034602708
-
Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria
-
Nishiwaki, T., H. Iwasaki, M. Ishiura, and T. Kondo. 2000. Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria. Proc. Natl. Acad. Sci. USA. 97:495-499.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 495-499
-
-
Nishiwaki, T.1
Iwasaki, H.2
Ishiura, M.3
Kondo, T.4
-
4
-
-
0037881861
-
KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system
-
Kitayama, Y., H. Iwasaki, T. Nishiwaki, and T. Kondo. 2003. KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system. EMBO J. 22:2127-2134.
-
(2003)
EMBO J
, vol.22
, pp. 2127-2134
-
-
Kitayama, Y.1
Iwasaki, H.2
Nishiwaki, T.3
Kondo, T.4
-
5
-
-
4644310259
-
Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942
-
Nishiwaki, T., Y. Satomi, M. Nakajima, C. Lee, R. Kiyohara, H. Kageyama, Y. Kitayama, M. Temamoto, A. Yamaguchi, A. Hijikata, M. Go, H. Iwasaki, T. Takao, and T. Kondo. 2004. Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942. Proc. Natl. Acad. Sci. USA. 101:13927-13932.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 13927-13932
-
-
Nishiwaki, T.1
Satomi, Y.2
Nakajima, M.3
Lee, C.4
Kiyohara, R.5
Kageyama, H.6
Kitayama, Y.7
Temamoto, M.8
Yamaguchi, A.9
Hijikata, A.10
Go, M.11
Iwasaki, H.12
Takao, T.13
Kondo, T.14
-
6
-
-
4644325554
-
Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses
-
Xu, Y., T. Mori, R. Pattanayek, S. Pattanayek, M. Egli, and C. H. Johnson. 2004. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses. Proc. Natl. Acad. Sci. USA. 101:13933-13938.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 13933-13938
-
-
Xu, Y.1
Mori, T.2
Pattanayek, R.3
Pattanayek, S.4
Egli, M.5
Johnson, C.H.6
-
7
-
-
0037168601
-
Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA
-
Mori, T., S. V. Saveliev, Y. Xu, W. F. Stafford, M. M. Cox, R. B. Inman, and C. H. Johnson. 2002. Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proc. Natl. Acad. Sci. USA. 99:17203-17208.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 17203-17208
-
-
Mori, T.1
Saveliev, S.V.2
Xu, Y.3
Stafford, W.F.4
Cox, M.M.5
Inman, R.B.6
Johnson, C.H.7
-
8
-
-
0348026753
-
ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC
-
Hayashi, F., H. Suzuki, R. Iwase, T. Uzumaki, A. Miyake, J. R. Shen, K. Imada, Y. Furukawa, K. Yonekura, K. Namba, and M. Ishiura. 2003. ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC. Genes Cells. 8:287-296.
-
(2003)
Genes Cells
, vol.8
, pp. 287-296
-
-
Hayashi, F.1
Suzuki, H.2
Iwase, R.3
Uzumaki, T.4
Miyake, A.5
Shen, J.R.6
Imada, K.7
Furukawa, Y.8
Yonekura, K.9
Namba, K.10
Ishiura, M.11
-
9
-
-
0037180437
-
Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: A potential clock input mechanism
-
Williams, S. B., I. Vakonakis, S. S. Golden, and A. C. LiWang. 2002. Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: A potential clock input mechanism. Proc. Natl. Acad. Sci. USA. 99:15357-15362.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 15357-15362
-
-
Williams, S.B.1
Vakonakis, I.2
Golden, S.S.3
LiWang, A.C.4
-
10
-
-
1242274653
-
NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: Implications for KaiA-KaiC interaction
-
Vakonakis, I., J. Sun, T. Wu, A. Holzenburg, S. S. Golden, and A. C. LiWang. 2004. NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: Implications for KaiA-KaiC interaction. Proc. Natl. Acad. Sci. USA. 101:1479-1484.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 1479-1484
-
-
Vakonakis, I.1
Sun, J.2
Wu, T.3
Holzenburg, A.4
Golden, S.S.5
LiWang, A.C.6
-
11
-
-
2442569769
-
Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC
-
Garces, R. G., N. Wu, W. Gillon, and E. F. Pai. 2004. Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC. EMBO J. 23:1688-1698.
-
(2004)
EMBO J
, vol.23
, pp. 1688-1698
-
-
Garces, R.G.1
Wu, N.2
Gillon, W.3
Pai, E.F.4
-
12
-
-
3342889359
-
Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: Implications for KaiC regulation
-
Vakonakis, I., and A. C. LiWang. 2004. Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation. Proc. Natl. Acad. Sci. USA. 101:10925-10930.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10925-10930
-
-
Vakonakis, I.1
LiWang, A.C.2
-
13
-
-
0038219594
-
Cyanobacterial circadian clockwork: Roles of KaiA, KaiB and the KaiBC promoter in regulating KaiC
-
Xu, Y., T. Mori, and C. H. Johnson. 2003. Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the KaiBC promoter in regulating KaiC. EMBO J. 22:2117-2126.
-
(2003)
EMBO J
, vol.22
, pp. 2117-2126
-
-
Xu, Y.1
Mori, T.2
Johnson, C.H.3
-
14
-
-
2442421006
-
Crystal structure of circadian clock protein KaiA from Synechococcus elongatus
-
Ye, S., I. Vakonakis, T. R. Ioerger, A. C. LiWang, and J. C. Sacchettini. 2004. Crystal structure of circadian clock protein KaiA from Synechococcus elongatus. J. Biol. Chem. 279:20511-20518.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 20511-20518
-
-
Ye, S.1
Vakonakis, I.2
Ioerger, T.R.3
LiWang, A.C.4
Sacchettini, J.C.5
-
15
-
-
3042637775
-
Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein
-
Uzumaki, T., M. Fujita, T. Nakatsu, F. Hayashi, H. Shibata, N. Itoh, H. Kato, and M. Ishiura. 2004. Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein. Nat. Struct. Mol. Biol. 11:623-631.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 623-631
-
-
Uzumaki, T.1
Fujita, M.2
Nakatsu, T.3
Hayashi, F.4
Shibata, H.5
Itoh, N.6
Kato, H.7
Ishiura, M.8
-
16
-
-
33646593201
-
Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods
-
Pattanayek, R., D. R. Williams, S. Pattanayek, Y. Xu, T. Mori, C. H. Johnson, P. L. Stewart, and M. Egli. 2006. Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods. EMBO J. 25:2017-2028.
-
(2006)
EMBO J
, vol.25
, pp. 2017-2028
-
-
Pattanayek, R.1
Williams, D.R.2
Pattanayek, S.3
Xu, Y.4
Mori, T.5
Johnson, C.H.6
Stewart, P.L.7
Egli, M.8
-
17
-
-
30044441280
-
Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex
-
Iwase, R., K. Imada, F. Hayashi, T. Uzumaki, M. Morishita, K. Onai, Y. Furukawa, K. Namba, and M. Ishiura. 2005. Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex. J. Biol. Chem. 280:43141-43149.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 43141-43149
-
-
Iwase, R.1
Imada, K.2
Hayashi, F.3
Uzumaki, T.4
Morishita, M.5
Onai, K.6
Furukawa, Y.7
Namba, K.8
Ishiura, M.9
-
18
-
-
21444458211
-
Tetrameric architecture of the circadian clock protein KaiB. A novel interface for intermolecular interactions and its impact on the circadian rhythm
-
Hitomi, K., T. Oyama, S. Han, A. S. Arvai, and E. D. Getzoff. 2005. Tetrameric architecture of the circadian clock protein KaiB. A novel interface for intermolecular interactions and its impact on the circadian rhythm. J. Biol. Chem. 280:19127-19135.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 19127-19135
-
-
Hitomi, K.1
Oyama, T.2
Han, S.3
Arvai, A.S.4
Getzoff, E.D.5
-
19
-
-
12244296161
-
No transcription-translation feedback in circadian rhythm of KaiC phosphorylation
-
Tomita, J., M. Nakajima, T. Kondo, and H. Iwasaki. 2005. No transcription-translation feedback in circadian rhythm of KaiC phosphorylation. Science. 307:251-254.
-
(2005)
Science
, vol.307
, pp. 251-254
-
-
Tomita, J.1
Nakajima, M.2
Kondo, T.3
Iwasaki, H.4
-
20
-
-
17244373578
-
Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro
-
Nakajima, M., K. Imai, H. Ito, T. Nishiwaki, Y. Murayama, H. Iwasaki, T. Oyama, and T. Kondo. 2005. Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science. 308:414-415.
-
(2005)
Science
, vol.308
, pp. 414-415
-
-
Nakajima, M.1
Imai, K.2
Ito, H.3
Nishiwaki, T.4
Murayama, Y.5
Iwasaki, H.6
Oyama, T.7
Kondo, T.8
-
21
-
-
33746147001
-
Cyanobacterial circadian pacemaker: Kai protein complex dynamics in the KaiC phosphorylation cycle in vitro
-
Kageyama, H., T. Nishiwaki, M. Nakajima, H. Iwasaki, T. Oyama, and T. Kondo. 2006. Cyanobacterial circadian pacemaker: Kai protein complex dynamics in the KaiC phosphorylation cycle in vitro. Mol. Cell. 23:161-171.
-
(2006)
Mol. Cell
, vol.23
, pp. 161-171
-
-
Kageyama, H.1
Nishiwaki, T.2
Nakajima, M.3
Iwasaki, H.4
Oyama, T.5
Kondo, T.6
-
22
-
-
36049042660
-
ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria
-
Terauchi, K., Y. Kitayama, T. Nishiwaki, K. Miwa, Y. Murayama, T. Oyama, and T. Kondo. 2007. ATPase activity of KaiC determines the basic timing for circadian clock of cyanobacteria. Proc. Natl. Acad. Sci. USA. 104:16377-16381.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 16377-16381
-
-
Terauchi, K.1
Kitayama, Y.2
Nishiwaki, T.3
Miwa, K.4
Murayama, Y.5
Oyama, T.6
Kondo, T.7
-
23
-
-
34548382214
-
A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria
-
Nishiwaki, T., Y. Satomi, Y. Kitayama, K. Terauchi, R. Kiyohara, T. Takao, and T. Kondo. 2007. A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria. EMBO J. 26:4029-4037.
-
(2007)
EMBO J
, vol.26
, pp. 4029-4037
-
-
Nishiwaki, T.1
Satomi, Y.2
Kitayama, Y.3
Terauchi, K.4
Kiyohara, R.5
Takao, T.6
Kondo, T.7
-
24
-
-
35848958822
-
Autonomous synchronization of the circadian KaiC phosphorylation rhythm
-
Ito, H., H. Kageyama, M. Mutsuda, M. Nakajima, T. Oyama, and T. Kondo. 2007. Autonomous synchronization of the circadian KaiC phosphorylation rhythm. Nat. Struct. Mol. Biol. 14:1084-1088.
-
(2007)
Nat. Struct. Mol. Biol
, vol.14
, pp. 1084-1088
-
-
Ito, H.1
Kageyama, H.2
Mutsuda, M.3
Nakajima, M.4
Oyama, T.5
Kondo, T.6
-
25
-
-
37549018348
-
Ordered phosphorylation governs oscillation of a three-protein circadian clock
-
Rust, M. J., J. S. Markson, W. S. Lane, D. S. Fisher, and E. K. O'Shea. 2007. Ordered phosphorylation governs oscillation of a three-protein circadian clock. Science. 318:809-812.
-
(2007)
Science
, vol.318
, pp. 809-812
-
-
Rust, M.J.1
Markson, J.S.2
Lane, W.S.3
Fisher, D.S.4
O'Shea, E.K.5
-
26
-
-
34247232450
-
Elucidating the ticking of an in vitro circadian clockwork
-
Mori, T., D. R. Williams, M. O. Byrne, X. Qin, M. Egli, H. S. Mchaourab, P. L. Stewart, and C. H. Johnson. 2007. Elucidating the ticking of an in vitro circadian clockwork. PLoS Biol. 5:841-853.
-
(2007)
PLoS Biol
, vol.5
, pp. 841-853
-
-
Mori, T.1
Williams, D.R.2
Byrne, M.O.3
Qin, X.4
Egli, M.5
Mchaourab, H.S.6
Stewart, P.L.7
Johnson, C.H.8
-
27
-
-
34250637942
-
An allosteric model of circadian KaiC phosphorylation
-
van Zon, J. S., D. K. Lubensky, P. R. H. Altena, and P. R. ten Wolde. 2007. An allosteric model of circadian KaiC phosphorylation. Proc. Natl. Acad. Sci. USA. 104:7420-7425.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 7420-7425
-
-
van Zon, J.S.1
Lubensky, D.K.2
Altena, P.R.H.3
ten Wolde, P.R.4
-
28
-
-
55849125779
-
Monomer-shuffling and allosteric transition in KaiC circadian oscillation
-
Yoda, M., K. Eguchi, T. P. Terada, and M. Sasai. 2007. Monomer-shuffling and allosteric transition in KaiC circadian oscillation. PLoS ONE. 2:e408.
-
(2007)
PLoS ONE
, vol.2
-
-
Yoda, M.1
Eguchi, K.2
Terada, T.P.3
Sasai, M.4
-
29
-
-
33746582415
-
Circadian rhythmicity by autocatalysis
-
Mehra, A., C. Hong, M. Shi, J. J. Loros, J. C. Dunlap, and P. Ruoff. 2006. Circadian rhythmicity by autocatalysis. PLoS Comput. Biol. 2:e96.
-
(2006)
PLoS Comput. Biol
, vol.2
-
-
Mehra, A.1
Hong, C.2
Shi, M.3
Loros, J.J.4
Dunlap, J.C.5
Ruoff, P.6
-
30
-
-
33947230522
-
Functioning and robustness of a bacterial circadian clock
-
Clodong, S., U. Dühring, L. Kronk, A. Wilde, I. Axmann, H. Herzel, and M. Kollmann. 2007. Functioning and robustness of a bacterial circadian clock. Mol. Syst. Biol. 3:90.
-
(2007)
Mol. Syst. Biol
, vol.3
, pp. 90
-
-
Clodong, S.1
Dühring, U.2
Kronk, L.3
Wilde, A.4
Axmann, I.5
Herzel, H.6
Kollmann, M.7
-
31
-
-
32644489285
-
Hourglass model for a protein-based circadian oscillator
-
Emberly, E., and N. S. Wingreen. 2006. Hourglass model for a protein-based circadian oscillator. Phys. Rev. Lett. 96:038303.
-
(2006)
Phys. Rev. Lett
, vol.96
, pp. 038303
-
-
Emberly, E.1
Wingreen, N.S.2
-
32
-
-
33748643400
-
Predicting regulation of the phosphorylation cycle of KaiC clock protein using mathematical analysis
-
Takigawa-Imamura, H., and A. Mochizuki. 2006. Predicting regulation of the phosphorylation cycle of KaiC clock protein using mathematical analysis. J. Biol. Rhythms. 21:405-416.
-
(2006)
J. Biol. Rhythms
, vol.21
, pp. 405-416
-
-
Takigawa-Imamura, H.1
Mochizuki, A.2
-
33
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie, D. T. 1977. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81:2340-2361.
-
(1977)
J. Phys. Chem
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
34
-
-
34249859168
-
Cyanobacterial clock, a stable phase oscillator with negligible intercellular coupling
-
Amdaoud, M., M. Vallade, C. W. Schaber, and I. Mihalcescu. 2007. Cyanobacterial clock, a stable phase oscillator with negligible intercellular coupling. Proc. Natl. Acad. Sci. USA. 104:7051-7056.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 7051-7056
-
-
Amdaoud, M.1
Vallade, M.2
Schaber, C.W.3
Mihalcescu, I.4
-
35
-
-
3042810019
-
Resilient circadian oscillator revealed in individual cyanobacteria
-
Mihalcescu, I., W. Hsing, and S. Leibler. 2004. Resilient circadian oscillator revealed in individual cyanobacteria. Nature. 430:81-85.
-
(2004)
Nature
, vol.430
, pp. 81-85
-
-
Mihalcescu, I.1
Hsing, W.2
Leibler, S.3
|