Mutation accumulation and the effect of copia insertions in Drosophila melanogaster

Genetical Research

Volumn 83, Issue 1, 2004, Pages 7-18

  Houle, David ^a   Nuzhdin, Sergey V ^b  

^a FLORIDA STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; BREEDING; CONTROLLED STUDY; CRYOPRESERVATION; DROSOPHILA MELANOGASTER; GENE INSERTION; GENE MUTATION; GENOTYPE; INSECT GENETICS; MATING SYSTEM; MONITORING; MUTATION RATE; NONHUMAN; POPULATION GENETICS; TRANSPOSON;

ANIMALS; CROSSES, GENETIC; DNA TRANSPOSABLE ELEMENTS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; FEMALE; FERTILITY; GENETICS, POPULATION; IN SITU HYBRIDIZATION; MALE; MUTATION; PEPTIDE HYDROLASES; REGRESSION ANALYSIS; RETROELEMENTS; VARIATION (GENETICS);

DROSOPHILA MELANOGASTER; MELANOGASTER; RAPHIA FRATER;

EID: 1842687155     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672303006505     Document Type: Article

References (63)

1. Ávila, V. & García-Dorado, A. (2002). The effects of spontaneous mutation on competitive fitness in Drosophila melanogaster. Journal of Evolutionary Biology 15, 561-566.
2. Bateman, A.J. (1959). The viability of near-normal irradiated chromosomes. International Journal of Radiation Biology 1, 170-180.
3. Belyaeva, E. S., Pasyukova, E. G., Gvozdev, V. A. & Kaidanov, L. Z. (1982). Transpositions of mobile dispersed genes in Drosophila melanogaster and fitness of stocks. Molecular and General Genetics 185, 324-328.
4. Biemont, C., Aouar, A. & Arnault, C. (1987). Genome reshuffling of the copia element in an inbred line of Drosophila melanogaster. Nature 329, 742-744.
5. Charlesworth, B. & Charlesworth, D. (1985). Genetic variation in recombination in Drosophila. I. Responses to selection and preliminary genetic analysis. Heredity 54, 71-83.
6. Charlesworth, B., Charlesworth, D. & Morgan, M. T. (1990). Genetic loads and estimates of mutation rates in highly inbred plant populations. Nature 347, 380-382.
7. Charlesworth, B., Lapid, A. & Canada, D. (1992a). The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster: 1. Element frequencies and distribution. Genetical Research 60, 103-114.
8. Charlesworth, B., Lapid, A. & Canada, D. (1992b). The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster: 2. Inferences on the nature of selection against elements. Genetical Research 60, 115-130.
9. Chavarrías, D., López-Fanjul, C. & García-Dorado, A. (2001). The rate of mutation and the homozygous and heterozygous mutational effects for competitive viability: a long-term experiment with Drosophila melanogaster. Genetics 158, 681-693.
10. Deng, H.-W. (1998). Characterization of deleterious mutations in outcrossing populations. Genetics 150, 945-956.
11. Deng, H.-W. & Lynch, M. (1996). Estimation of deleterious mutation parameters in natural populations. Genetics 144, 349-360.
12. Denver, D. R., Morris, K., Lynch, M., Vassilieva, L. L. & Thomas, W. K. (2000). High direct estimate of the mutation rate in mitochondrial genome of Caenorhabditis elegans. Science 289, 2342-2344.
13. Drake, J. W., Charlesworth, B., Charlesworth, D. & Crow, J. F. (1998). Rates of spontaneous mutation. Genetics 148, 1667-1686.
14. Eanes, W. F., Wesley, C., Hey, J., Houle, D. & Ajioka, J. W. (1988). The fitness consequences of P element insertion in Drosophila melanogaster. Genetical Research 52, 17-26.
15. Fernández, J. & López-Fanjul, C. (1996). Spontaneous mutational variances and covariances for fitness-related traits in Drosophila melanogaster. Genetics 143, 829-837.
16. Finnegan, D. J., Rubin, G. M., Young, M. W. & Hogness, D. S. (1978). Repeated gene families in Drosophila melanogaster. Cold Spring Harbor Symposia in Quantitative Biology 42, 1053-1063.
17. Fry, J. D. (2001). Rapid mutation declines of viability in Drosophila. Genetical Research 77, 53-60.
18. Fry, J. D., Keightley, P. D., Heinsohn, S. L. & Nuzhdin, S. V. (1999). New estimates of the rates and effects of mildly deleterious mutation in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the USA 96, 574-579.
19. García-Dorado, A. (1997). The rate and effects distribution of viability mutation in Drosophila: minimum distance estimation. Evolution 51, 1130-1139.
20. García-Dorado, A., López-Fanjul, C. & Caballero, A. (1999). Properties of spontaneous mutations affecting quantitative traits. Genetical Research 74, 341-350.
21. Harada, K., Kusakabe, S., Yamazaki, T. & Mukai, T. (1993). Spontaneous mutation rates in null and bandmorph mutations of enzyme loci in Drosophila melanogaster. Japanese Journal of Genetics 68, 605-616.
22. Houle, D. (1998). How should we explain variance in the genetic variance of traits? Genetica 102/103, 241-253.
23. Houle, D. & Kondrashov, A. S. (2002). Coevolution of costly mate choice and condition-dependent display of good genes. Proceedings of the Royal Society of London B: Biological Sciences 269, 97-104.
24. Houle, D., Hoffmaster, D., Assimacopoulos, S. & Charlesworth, B. (1994a). Correction: the genomic mutation rate for fitness in Drosophila. Nature 37, 358.
25. Houle, D., Hughes, K. A., Hoffmaster, D. K., Ihara, J., Assimacopoulos, S., Canada, D. & Charlesworth, B. (1994h). The effects of spontaneous mutation on quantitative traits. I. Variance and covariance of life history traits. Genetics 138, 773-785.
26. Houle, D., Morikawa, B. & Lynch, M. (1996). Comparing mutational variabilities. Genetics 143, 1467-1483.
27. Houle, D., Kondrashov, A. S., Yampolsky, L. Y., Caldwell, S. & Steponkus, P. L. (1997). The effect of cryopreservation on the lethal mutation rate in Drosophila melanogaster. Genetical Research 69, 209-213.
28. Howell, N., Kubacka, I. & Mackey, D. A. (1996). How rapidly does the human mitochondrial genome evolve? American Journal of Human Genetics 59, 501-509.
29. Keightley, P. D. (1994). The distribution of effects on viability in Drosophila melanogaster. Genetics 138, 1315-1322.
30. Keightley, P. D. (1996). Nature of deleterious mutation load in Drosophila. Genetics 144, 1993-1999.
31. Keightley, P. D. & Bataillon, T. M. (2000). Multigeneration maximum-likelihood analysis applied to mutation-accumulation experiments in Caenorhabditis elegans. Genetics 154, 1193-1201.
32. Keightley, P. D. & Eyre-Walker, A. (1999). Terumi Mukai and the riddle of deleterious mutation rates. Genetics 153, 515-523.
33. Keightley, P. D. & Eyre-Walker, A. (2000). Deleterious mutations and the evolution of sex. Science 290, 331-333.
34. Keightley, P. D., Mackay, T. F. C. & Caballero, A. (1993). Accounting for bias in estimates of the rate of polygenic mutation. Proceedings of the Royal Society of London B: Biological Sciences 253, 291-296.
35. Kim, A. I. & Belyaeva, E. S. (1991). Transposition of mobile elements gypsy (mdg4) and hobo in germ line and somatic cells of a genetically unstable mutator strain of Drosophila melanogaster. Molecular and General Genetics 229, 437-444.
36. Kondrashov, A. S. (1988). Deleterious mutations and the evolution of sexual reproduction. Nature 336, 435-440.
37. Kondrashov, A. S. & Crow, J. F. (1993). A molecular approach to estimating the human deleterious mutation rate. Human Mutation 2, 229-234.
38. Lindsley, D. L. & Zimm, G. (1992). The Genome of Drosophila melanogaster. San Diego: Academic Press.
39. Lyman, R. F., Lawrence, F., Nuzhdin, S. V. & Mackay, T. F. C. (1996). Effects of single P-element insertions on bristle number and viability in Drosophila melanogaster. Genetics 143, 277-292.
40. Lynch, M., Conery, J. & Bürger, R. (1995). Mutation accumulation and the extinction of small populations. American Naturalist 146, 489-518.
41. Lynch, M., Blanchard, J., Houle, D., Kibota, T., Schultz, S., Vassilieva, L. & Willis, J. (1999). Perspective: spontaneous deleterious mutation. Evolution 53, 645-663.
42. Mackay, T. F. C., Lyman, R. F. & Jackson, M. S. (1992). Effects of P element insertions on quantitative traits in Drosophila melanogaster. Genetics 130, 315-332.
43. Mackay, T. F. C., Lyman, R. F. & Hill, W. G. (1995). Polygenic mutation in Drosophila melanogaster: nonlinear divergence among unselected strains. Genetics 139, 849-859.
44. Maside, X., Assimacopoulos, S. & Charlesworth, B. (2000). Rates of movement of transposable elements on the second chromosome of Drosophila melanogaster. Genetical Research 75, 275-284.
45. Mukai, T. (1964). The genetic structure of natural populations of Drosophila melanogaster. I. Spontaneous Mutation rate of polygenes controlling viability. Genetics 50, 1-19.
46. Mukai, T. (1969). The genetic structure of natural populations of Drosophila melanogaster. VII. Synergistic interaction of spontaneous mutant polygenes controlling viability. Genetics 61, 749-761.
47. Mukai, T. & Cockerham, C. C. (1977). Spontaneous mutation rates at enzyme loci in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the USA 74, 2514-2517.
48. Mukai, T., Chigusa, S. I., Mettler, L. E. & Crow, J. F. (1972). Mutation rate and dominance of genes affecting viability in Drosophila melanogaster. Genetics 72, 335-355.
49. Nuzhdin, S. V. & Mackay, T. F. C. (1994). Direct determination of retrotransposon transposition rates in Drosophila melanogaster. Genetical Research 63, 139-144.
50. Nuzhdin, S. V. & Mackay, T. F. C. (1995). The genomic rate of transposable element movement in Drosophila melanogaster. Molecular Biology and Evolution 12, 180-181.
51. Nuzhdin, S. V., Pasyukova, E. G. & Mackay, T. F. C. (1996). Positive association between copia transposition rate and copy number in Drosophila melanogaster. Proceedings of the Royal Society of London B: Biological Sciences 263, 823-831.
52. Nuzhdin, S. V., Pasyukova, E. G. & Mackay, T. F. C. (1997). Accumulation of transposable elements in laboratory lines of Drosophila melanogaster. Genetica 100, 167-175.
53. Ohnishi, O. (1977). Spontaneous and ethyl methanesulfonate-induced mutations controlling viability in Drosophila melanogaster. II. Homozygous effects of polygenic mutations. Genetics 87, 529-545.
54. Parsons, T. J., Muniec, D. S., Sullivan, K., Woodyatt, N., Alliston-Greiner, R., Wilson, M. R., Berry, D. L., Holland, K. A., Weedn, V. W., Gill, P. & Holland, M. M. (1997). A high observed substitution rate in the human mitochondrial DNA control region. Nature Genetics 15, 363-368.
55. Pasyukova, E. G. & Nuzhdin, S. V. (1992). Mobilization of retrotransposon copia in Drosophila melanogaster genome. Genetika 28, 5-18.
56. Pasyukova, E. G. & Nuzhdin, S. V. (1993). Doc and copia instability in an isogenic Drosophila melanogaster stock. Molecular and General Genetics 240, 302-306.
57. Pasyukova, E. G., Nuzhdin, S. V. & Filatov, D. A. (1998). The relationship between the rate of transposition and transposable element copy number for copia, Doc and roo retrotransposons. Genetical Research 72, 1-11.
58. SAS Institute (1990). SAS Procedures Guide, Version 6, 3rd edn. Cary, NC: SAS Institute.
59. Schultz, S. T. & Lynch, M. (1997). Mutation and extinction: the role of variable mutational effects, synergistic epistasis, beneficial mutations, and degree of outcrossing. Evolution 51, 1363-1371.
60. Shabalina, S. A., Yampolsky, L. Y. & Kondrashov, A. S. (1997). Rapid decline of fitness in panmictic populations of Drosophila melanogaster. Proceedings of the National Academy of Sciences of the USA 94, 13034 13039.
61. Shrimpton, A. E., Montgomery, E. A. & Langley, C. H. (1986). Om mutations in Drosophila ananassae are linked to insertions of a transposable element. Genetics 114, 125-135.
62. Steponkus, P. L. & Caldwell, S. (1993). An optimized procedure for the cryopreservation of Drosophila melanogaster embryos. Cryo-Letters 14, 375-380.
63. Voelker, R. A., Schaffer, H. E. & Mukai, T. (1980). Spontaneous allozyme mutation rates in Drosophila melanogaster: rate of occurrence and nature of the mutants. Genetics 94, 961-968.