Kinetics of folding and binding of an intrinsically disordered protein: The inhibitor of yeast aspartic proteinase YPrA

Journal of the American Chemical Society

Volumn 130, Issue 34, 2008, Pages 11477-11485

  Narayanan, Ranjani ^a   Ganesh, Omjoy K ^a   Edison, Arthur S ^a   Hagen, Stephen J ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINES;

PROTEIN FOLDING;

ASPARTIC PROTEINASE; ASPARTIC PROTEINASE A; INHIBITOR PROTEIN; PROTEIN IA3; TRIFLUOROETHANOL; UNCLASSIFIED DRUG;

ARTICLE; CHEMICAL BINDING; KAPPA STATISTICS; KINETICS; LASER; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN PROTEIN INTERACTION; PROTEIN STABILITY; SPECTROSCOPY; TEMPERATURE;

ASPARTIC ENDOPEPTIDASES; CIRCULAR DICHROISM; FLUORESCENCE RESONANCE ENERGY TRANSFER; KINETICS; PROTEASE INHIBITORS; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; SACCHAROMYCES CEREVISIAE; SOLUTIONS; SPECTROMETRY, FLUORESCENCE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TEMPERATURE;

EID: 50249134423     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja803221c     Document Type: Article

References (46)

1. Wright, P. E.; Dyson, H. J. J. Mol. Biol. 1999, 293 (2), 321-331.
2. Uversky, V. N.; Gillespie, J. R.; Fink, A. L. Proteins: Struct., Funct., Genet 2000, 41 (3), 415-427.
3. Dunker, A. K.; Cortese, M. S.; Romero, P.; Iakoucheva, L. M.; Uversky, V. N. FEBS J. 2005, 272 (20), 5129-5148.
4. Dyson, H. J.; Wright, P. E. Nat. Rev. Mol. Cell Biol. 2005, 6 (3), 197-208.
5. Fink, A. L. Curr. Opin. Struct. Biol. 2005, 15 (1), 35-41.
6. Uversky, V. N.; Oldfield, C. J.; Dunker, A. K. J. Mol. Recognit. 2005, 18 (5), 343-384.
7. Le Gall, T.; Romero, P. R.; Cortese, M. S.; Uversky, V. N.; Dunker, A. K. J. Biomol. Struct. Dyn. 2007, 24 (4), 325-341.
8. Radivojac, P.; Iakoucheva, L. M.; Oldfield, C. J.; Obradovic, Z.; Uversky, V. N.; Dunker, A. K. Biophys. J. 2007, 92 (5), 1439-1456.
9. Xie, H. B.; Vucetic, S.; Iakoucheva, L. M.; Oldfield, C. J.; Dunker, A. K.; Uversky, V. N.; Obradovic, Z. J. Proteome Res. 2007, 6 (5), 1882-1898.
10. Dyson, H. J.; Wright, P. E. Curr. Opin. Struct. Biol. 2002, 12 (1), 54-60.
11. Dunker, A. K.; et al. J. Mol. Graphics Modell. 2001, 19 (1), 26-59.
12. Shoemaker, B. A.; Portman, J. J.; Wolynes, P. G. Proc. Natl. Acad. Sci. U.S.A. 2000, 97 (16), 8868-8873.
13. Wang, J.; Zhang, K.; Lu, H. Y.; Wang, E. K. Phys. Rev. Lett. 2006, 96, (16).
14. Sugase, K.; Dyson, H. J.; Wright, P. E. Nature 2007, 447 (7147), 1021-1025.
15. Onitsuka, M.; Kamikubo, H.; Yamazaki, Y.; Kataoka, M. Proteins: Struct., Funct., Bioinf. 2008, 72 (3), 837-847.
16. Muralidhara, B. K.; Rathinakumar, R.; Wittung-Stafshede, P. Arch. Biochem. Biophys. 2006, 451 (1), 51-58.
17. Meisner, W. K.; Sosnick, T. R. Proc. Natl. Acad. Sci. U.S.A. 2004, 101 (37), 13478-13482.
18. Dreyer, T.; Valler, M. J.; Kay, J.; Charlton, P.; Dunn, B. M. Biochem. J. 1985, 231 (3), 777-779.
19. Parr, C. L.; Keates, R. A. B.; Bryksa, B. C.; Ogawa, M.; Yada, R. Y. Yeast 2007, 24 (6), 467-480.
20. Lenney, J. F.; Wiemken, A.; SCHELLEN, M.; Meyer, J. Biochem. Biophys. Res. Commun. 1974, 60 (4), 1378-1383.
21. Hasilik, A.; Muller, H.; Holzer, H. Eur. J. Biochem. 1974, 48 (1), 111-117.
22. Ganesh, O. K.; Green, T. B.; Edison, A. S.; Hagen, S. J. Biochemistry 2006, 45 (45), 13585-13596.
23. Green, T. B.; Ganesh, O.; Perry, K.; Smith, L.; Phylip, L. H.; Logan, T. M.; Hagen, S. J.; Dunn, B. M.; Edison, A. S. Biochemistry 2004, 43 (14), 4071-4081.
24. Li, M.; Phylip, L. H.; Lees, W. E.; Winther, J. R.; Dunn, B. M.; Wlodaawer, A.; Kay, J.; Gustchina, A. Nat. Struct. Biol. 2000, 7 (2), 113-117.
25. Phylip, L. H.; Lees, W. E.; Brownsey, B. G.; Bur, D.; Dunn, B. M.; Winther, J. R.; Gustchina, A.; Li, M.; Copeland, T.; Wlodawer, A.; Kay, J. J. Biol. Chem. 2001, 276 (3), 2023-2030.
26. Wu, P. G.; Brand, L. Anal. Biochem. 1994, 218 (1), 1-13.
27. Dunn, B. M.; Kammermann, B.; Mccurry, K. R. Anal. Biochem. 1984, 138 (1), 68-73.
28. Kondo, H.; Shibano, Y.; Amachi, T.; Cronin, N.; Oda, K.; Dunn, B. M. J. Biochem. 1998, 124 (1), 141-147.
29. Jasanoff, A.; Fersht, A. R. Biochemistry 1994, 33 (8), 2129-2135.
30. Luo, P. Z.; Baldwin, R. L. Biochemistry 1997, 36 (27), 8413-8421.
31. Qiu, L. L.; Pabit, S. A.; Roitberg, A. E.; Hagen, S. J. J. Am. Chem. Soc. 2002, 124 (44), 12952-12953.
32. Henry, E. R.; Hofrichter, J. Methods Enzymol. 1992, 210, 129-192.
33. Hendler, R. W.; Shrager, R. I. J. Biochem. Biophys. Methods 1994, 28, 1-33.
34. Buck, M. Q. Rev. Biophys. 1998, 31 (3), 297-355.
35. Huang, C. Y.; Getahun, Z.; Wang, T.; DeGrado, W. F.; Gai, F. J. Am. Chem. Soc. 2001, 123 (48), 12111-12112.
36. Huang, C. Y.; Getahun, Z.; Zhu, Y.; Klemke, J. W.; DeGrado, W. F.; Gai, F. Proc. Natl. Acad. Sci. U.S.A. 2002, 99 (5), 2788-2793.
37. Thompson, P. A.; Eaton, W. A.; Hofrichter, J. Biochemistry 1997, 36 (30), 9200-9210.
38. Williams, S.; Causgrove, T. P.; Gilmanshin, R.; Fang, K. S.; Callender, R. H.; Woodruff, W. H.; Dyer, R. B. Biochemistry 1996, 35 (3), 691-697.
39. Dyer, R. B.; Gai, F.; Woodruff, W. H. Acc. Chem. Res. 1998, 31 (11), 709-716.
40. Causgrove, T. P.; Dyer, R. B. Chem. Phys. 2006, 323 (1), 2-10.
41. Verkhivker, G. M.; Bouzida, D.; Gehlhaar, D. K.; Rejto, P. A.; Freer, S. T.; Rose, P. W. Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (9), 5148-5153.
42. Lu, Q.; Lu, H. P.; Wang, J. Phys. Rev. Lett. 2007, 98, 128105.
43. Crespin, M. O.; Boys, B. L.; Konermann, L. Febs Lett. 2005, 579 (1), 271-274.
44. Northrup, S. H.; Erickson, H. P. Proc. Natl. Acad. Sci. U.S.A. 1992, 89 (8), 3338-3342.
45. Winterburn, T. J.; Phylip, L. H.; Bur, D.; Wyatt, D. M.; Berry, C.; Kay, J. FEBS J. 2007, 274, 3685-3694.
46. Lu, Q.; Wang, J. J. Am. Chem. Soc. 2008, 130 (14), 4772-4783.