메뉴 건너뛰기




Volumn 4917 LNCS, Issue , 2008, Pages 161-175

Experiences with parallelizing a bio-informatics program on the Cell BE

Author keywords

[No Author keywords available]

Indexed keywords

ALIGNMENT; CELLS; CYTOLOGY; DATA STORAGE EQUIPMENT; GENERAL PURPOSE COMPUTERS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MICROPROCESSOR CHIPS; PROGRAM COMPILERS;

EID: 49949085973     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-77560-7_12     Document Type: Conference Paper
Times cited : (12)

References (18)
  • 1
    • 27344435504 scopus 로고    scopus 로고
    • The design and implementation of a first-generation Cell processor
    • Pham, D., et al.: The design and implementation of a first-generation Cell processor. In: IEEE International Solid-State Circuits Conference, pp. 184-592 (2005)
    • (2005) IEEE International Solid-State Circuits Conference , pp. 184-592
    • Pham, D.1
  • 2
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins. D.G., Gibson, T.J.: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22), 4673-4680 (1994)
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 3
    • 31344445939 scopus 로고    scopus 로고
    • Flachs, B., et al.: The microarchitecture of the synergistic processor for a Cell processor. Solid-State Circuits. IEEE Journal of 41(1). 63-70 (2006)
    • Flachs, B., et al.: The microarchitecture of the synergistic processor for a Cell processor. Solid-State Circuits. IEEE Journal of 41(1). 63-70 (2006)
  • 5
    • 33749079198 scopus 로고    scopus 로고
    • Bader, D., Li, Y., Li. T., Sachdeva, V.: BioPerf: A Benchmark Suite to Evaluate High-Performance Computer Architecture on Bioinformatics Applications. In: The IEEE International Symposium on Workload Characterization, pp. 163-173 (October 2005)
    • Bader, D., Li, Y., Li. T., Sachdeva, V.: BioPerf: A Benchmark Suite to Evaluate High-Performance Computer Architecture on Bioinformatics Applications. In: The IEEE International Symposium on Workload Characterization, pp. 163-173 (October 2005)
  • 6
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith. T.F., Waterman, M.S.: Identification of common molecular subsequences. Journal of Molecular Biology 147(1), 195-197 (1981)
    • (1981) Journal of Molecular Biology , vol.147 , Issue.1 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 7
    • 0035680964 scopus 로고    scopus 로고
    • Computational complexity of multiple sequence alignment with SP-score
    • Just, W.: Computational complexity of multiple sequence alignment with SP-score. Journal of Computational Biology 8(6), 615-623 (2001)
    • (2001) Journal of Computational Biology , vol.8 , Issue.6 , pp. 615-623
    • Just, W.1
  • 8
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., Nei, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4(4), 406-425 (1987)
    • (1987) Mol. Biol. Evol , vol.4 , Issue.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 9
    • 13244255415 scopus 로고    scopus 로고
    • Muscle: A multiple sequence alignment method with reduced time and space complexity
    • Edgar, R.C.: Muscle: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5(1) (2004)
    • (2004) BMC Bioinformatics , vol.5 , Issue.1
    • Edgar, R.C.1
  • 11
    • 49949108357 scopus 로고    scopus 로고
    • Mikhailov, D., Cofer, H., Gomperts, R.: Performance Optimization of ClustalW: Parallel ClustalW. HT Clustal. and MULTICLUSTAL. White Paper, CA Silicon Graphics (2001)
    • Mikhailov, D., Cofer, H., Gomperts, R.: Performance Optimization of ClustalW: Parallel ClustalW. HT Clustal. and MULTICLUSTAL. White Paper, CA Silicon Graphics (2001)
  • 15
    • 77952336172 scopus 로고    scopus 로고
    • Heman, S., Nes, N., Zukowski, M., Boncz, P.A.: Vectorized Data Processing on the Cell Broadband Engine. In: Proceedings of the International Workshop on Data Management on New Hardware (June 2007)
    • Heman, S., Nes, N., Zukowski, M., Boncz, P.A.: Vectorized Data Processing on the Cell Broadband Engine. In: Proceedings of the International Workshop on Data Management on New Hardware (June 2007)
  • 16
    • 34548718683 scopus 로고    scopus 로고
    • Bader, D.A., Agarwal, V., Madduri, K.: On the design and analysis of irregular algorithms on the cell processor: A case study on list ranking. In: 21st IEEE International Parallel and Distributed Processing Symposium (March 2007)
    • Bader, D.A., Agarwal, V., Madduri, K.: On the design and analysis of irregular algorithms on the cell processor: A case study on list ranking. In: 21st IEEE International Parallel and Distributed Processing Symposium (March 2007)


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.