-
1
-
-
27344435504
-
The design and implementation of a first-generation Cell processor
-
Pham, D., et al.: The design and implementation of a first-generation Cell processor. In: IEEE International Solid-State Circuits Conference, pp. 184-592 (2005)
-
(2005)
IEEE International Solid-State Circuits Conference
, pp. 184-592
-
-
Pham, D.1
-
2
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins. D.G., Gibson, T.J.: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22(22), 4673-4680 (1994)
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
3
-
-
31344445939
-
-
Flachs, B., et al.: The microarchitecture of the synergistic processor for a Cell processor. Solid-State Circuits. IEEE Journal of 41(1). 63-70 (2006)
-
Flachs, B., et al.: The microarchitecture of the synergistic processor for a Cell processor. Solid-State Circuits. IEEE Journal of 41(1). 63-70 (2006)
-
-
-
-
4
-
-
33646015987
-
Synergistic processing in cell's multicore architecture
-
Gschwind, M., Hofstee, P.H., Flachs, B., Hopkins, M., Watanabe, Y., Yamazaki, T.: Synergistic processing in cell's multicore architecture. IEEE Micro 26(2), 10-24 (2006)
-
(2006)
IEEE Micro
, vol.26
, Issue.2
, pp. 10-24
-
-
Gschwind, M.1
Hofstee, P.H.2
Flachs, B.3
Hopkins, M.4
Watanabe, Y.5
Yamazaki, T.6
-
5
-
-
33749079198
-
-
Bader, D., Li, Y., Li. T., Sachdeva, V.: BioPerf: A Benchmark Suite to Evaluate High-Performance Computer Architecture on Bioinformatics Applications. In: The IEEE International Symposium on Workload Characterization, pp. 163-173 (October 2005)
-
Bader, D., Li, Y., Li. T., Sachdeva, V.: BioPerf: A Benchmark Suite to Evaluate High-Performance Computer Architecture on Bioinformatics Applications. In: The IEEE International Symposium on Workload Characterization, pp. 163-173 (October 2005)
-
-
-
-
6
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith. T.F., Waterman, M.S.: Identification of common molecular subsequences. Journal of Molecular Biology 147(1), 195-197 (1981)
-
(1981)
Journal of Molecular Biology
, vol.147
, Issue.1
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
7
-
-
0035680964
-
Computational complexity of multiple sequence alignment with SP-score
-
Just, W.: Computational complexity of multiple sequence alignment with SP-score. Journal of Computational Biology 8(6), 615-623 (2001)
-
(2001)
Journal of Computational Biology
, vol.8
, Issue.6
, pp. 615-623
-
-
Just, W.1
-
8
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., Nei, M.: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4(4), 406-425 (1987)
-
(1987)
Mol. Biol. Evol
, vol.4
, Issue.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
9
-
-
13244255415
-
Muscle: A multiple sequence alignment method with reduced time and space complexity
-
Edgar, R.C.: Muscle: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5(1) (2004)
-
(2004)
BMC Bioinformatics
, vol.5
, Issue.1
-
-
Edgar, R.C.1
-
11
-
-
49949108357
-
-
Mikhailov, D., Cofer, H., Gomperts, R.: Performance Optimization of ClustalW: Parallel ClustalW. HT Clustal. and MULTICLUSTAL. White Paper, CA Silicon Graphics (2001)
-
Mikhailov, D., Cofer, H., Gomperts, R.: Performance Optimization of ClustalW: Parallel ClustalW. HT Clustal. and MULTICLUSTAL. White Paper, CA Silicon Graphics (2001)
-
-
-
-
12
-
-
49949108356
-
MT-ClustalW: Multithreading multiple sequence alignment
-
Chaichoompu, K., Kittitornkun, S., Tongsima, S.: MT-ClustalW: multithreading multiple sequence alignment. In: Sixth IEEE International Workshop on High Performance Computational Biology, p. 8 (2006)
-
(2006)
Sixth IEEE International Workshop on High Performance Computational Biology
, pp. 8
-
-
Chaichoompu, K.1
Kittitornkun, S.2
Tongsima, S.3
-
13
-
-
34247349114
-
The potential of the Cell processor for scientific computing
-
May
-
Williams, S., Shalf, J., Oliker, L., Kamil, S., Husbands, P., Yelick, K.: The potential of the Cell processor for scientific computing. In: Proceedings of the 3rd conference on Computing frontiers, pp. 9-20 (May 2006)
-
(2006)
Proceedings of the 3rd conference on Computing frontiers
, pp. 9-20
-
-
Williams, S.1
Shalf, J.2
Oliker, L.3
Kamil, S.4
Husbands, P.5
Yelick, K.6
-
15
-
-
77952336172
-
-
Heman, S., Nes, N., Zukowski, M., Boncz, P.A.: Vectorized Data Processing on the Cell Broadband Engine. In: Proceedings of the International Workshop on Data Management on New Hardware (June 2007)
-
Heman, S., Nes, N., Zukowski, M., Boncz, P.A.: Vectorized Data Processing on the Cell Broadband Engine. In: Proceedings of the International Workshop on Data Management on New Hardware (June 2007)
-
-
-
-
16
-
-
34548718683
-
-
Bader, D.A., Agarwal, V., Madduri, K.: On the design and analysis of irregular algorithms on the cell processor: A case study on list ranking. In: 21st IEEE International Parallel and Distributed Processing Symposium (March 2007)
-
Bader, D.A., Agarwal, V., Madduri, K.: On the design and analysis of irregular algorithms on the cell processor: A case study on list ranking. In: 21st IEEE International Parallel and Distributed Processing Symposium (March 2007)
-
-
-
-
17
-
-
34548781271
-
RAxML-Cell: Parallel phylogenetic tree inference on the cell broadband engine
-
Blagojevic, F., Stamatakis, A., Autonopoulos, C,D., Nikolopoulos, D.E.: RAxML-Cell: Parallel phylogenetic tree inference on the cell broadband engine. In: International Symposiumon Parallel and Distributed Processing Systems (2007)
-
(2007)
International Symposiumon Parallel and Distributed Processing Systems
-
-
Blagojevic, F.1
Stamatakis, A.2
Autonopoulos, C.D.3
Nikolopoulos, D.E.4
-
18
-
-
34548705852
-
Exploring the viability of the Cell Broadband Engine for bioinformatics applications
-
March
-
Sachdeva, V., Kistler, M., Speight, E., Tzeng, T.H.K.: Exploring the viability of the Cell Broadband Engine for bioinformatics applications. In: Proceedings of the 6th Workshop on High Performance Computational Biology, p. 8 (March 2007)
-
(2007)
Proceedings of the 6th Workshop on High Performance Computational Biology
, pp. 8
-
-
Sachdeva, V.1
Kistler, M.2
Speight, E.3
Tzeng, T.H.K.4
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