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Volumn 88, Issue 5, 2008, Pages 399-409

IS1096-mediated DNA rearrangements play a key role in genome evolution of Mycobacterium smegmatis

Author keywords

Genomic duplication; Insertion sequence; IS1096; Mycobacterium smegmatis

Indexed keywords

DNA;

EID: 49549111607     PISSN: 14729792     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tube.2008.02.003     Document Type: Article
Times cited : (16)

References (37)
  • 1
    • 0020332282 scopus 로고
    • Changes in gene order and gene expression
    • Shapiro J.A. Changes in gene order and gene expression. Natl Cancer Inst Monogr 60 (1982) 87-110
    • (1982) Natl Cancer Inst Monogr , vol.60 , pp. 87-110
    • Shapiro, J.A.1
  • 2
    • 0024262193 scopus 로고
    • Recombination between repeated genes in microorganisms
    • Petes T.D., and Hill C.W. Recombination between repeated genes in microorganisms. Annu Rev Genet 22 (1988) 147-168
    • (1988) Annu Rev Genet , vol.22 , pp. 147-168
    • Petes, T.D.1    Hill, C.W.2
  • 3
    • 0029656003 scopus 로고    scopus 로고
    • Chromosomal duplications in bacteria, fruit flies, and humans
    • Lupski J.R., Roth J.R., and Weinstock G.M. Chromosomal duplications in bacteria, fruit flies, and humans. Am J Hum Genet 58 (1996) 21-27
    • (1996) Am J Hum Genet , vol.58 , pp. 21-27
    • Lupski, J.R.1    Roth, J.R.2    Weinstock, G.M.3
  • 4
    • 0035058359 scopus 로고    scopus 로고
    • Evolution of prokaryotic gene order: genome rearrangements in closely related species
    • Suyama M., and Bork P. Evolution of prokaryotic gene order: genome rearrangements in closely related species. Trends Genet 17 (2001) 10-13
    • (2001) Trends Genet , vol.17 , pp. 10-13
    • Suyama, M.1    Bork, P.2
  • 5
    • 85158048416 scopus 로고    scopus 로고
    • Insertion sequences revisited
    • Craig N.L., Craigie R., Gellert M., and Lambowitz A.M. (Eds), ASM Press, Washington, DC
    • Chandler M., and Mahillon J. Insertion sequences revisited. In: Craig N.L., Craigie R., Gellert M., and Lambowitz A.M. (Eds). Mobile DNA II (2002), ASM Press, Washington, DC 305-366
    • (2002) Mobile DNA II , pp. 305-366
    • Chandler, M.1    Mahillon, J.2
  • 6
    • 0345447448 scopus 로고    scopus 로고
    • Rearrangements and chromosomal evolution
    • Sankoff D. Rearrangements and chromosomal evolution. Curr Opin Genet Dev 13 (2003) 583-587
    • (2003) Curr Opin Genet Dev , vol.13 , pp. 583-587
    • Sankoff, D.1
  • 7
    • 3142706519 scopus 로고    scopus 로고
    • IS6110 functions as a mobile, monocyte-activated promoter in Mycobacterium tuberculosis
    • Safi H., Barnes P.F., Lakey D.L., Shams H., Samten B., Vankayalapati R., et al. IS6110 functions as a mobile, monocyte-activated promoter in Mycobacterium tuberculosis. Mol Microbiol 52 (2004) 999-1012
    • (2004) Mol Microbiol , vol.52 , pp. 999-1012
    • Safi, H.1    Barnes, P.F.2    Lakey, D.L.3    Shams, H.4    Samten, B.5    Vankayalapati, R.6
  • 8
  • 10
    • 0027498478 scopus 로고
    • Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology
    • van Embden J.D., Cave M.D., Crawford J.T., Dale J.W., Eisenach K.D., Gicquel B., et al. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol 31 (1993) 406-409
    • (1993) J Clin Microbiol , vol.31 , pp. 406-409
    • van Embden, J.D.1    Cave, M.D.2    Crawford, J.T.3    Dale, J.W.4    Eisenach, K.D.5    Gicquel, B.6
  • 11
    • 0035204732 scopus 로고    scopus 로고
    • Molecular identification of streptomycin monoresistant Mycobacterium tuberculosis related to multidrug-resistant W strain
    • Bifani P.J., Mathema B., Campo M., Moghazeh S.L., Nivin B., Shashkina E., et al. Molecular identification of streptomycin monoresistant Mycobacterium tuberculosis related to multidrug-resistant W strain. Emerg Infect Dis 7 (2001) 842-848
    • (2001) Emerg Infect Dis , vol.7 , pp. 842-848
    • Bifani, P.J.1    Mathema, B.2    Campo, M.3    Moghazeh, S.L.4    Nivin, B.5    Shashkina, E.6
  • 12
    • 0033596265 scopus 로고    scopus 로고
    • Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology
    • Bifani P.J., Mathema B., Liu Z., Moghazeh S.L., Shopsin B., Tempalski B., et al. Identification of a W variant outbreak of Mycobacterium tuberculosis via population-based molecular epidemiology. JAMA 282 (1999) 2321-2327
    • (1999) JAMA , vol.282 , pp. 2321-2327
    • Bifani, P.J.1    Mathema, B.2    Liu, Z.3    Moghazeh, S.L.4    Shopsin, B.5    Tempalski, B.6
  • 13
    • 0026350742 scopus 로고
    • A novel transposon trap for mycobacteria: isolation and characterization of IS1096
    • Cirillo J.D., Barletta R.G., Bloom B.R., and Jacobs Jr. W.R. A novel transposon trap for mycobacteria: isolation and characterization of IS1096. J Bacteriol 173 (1991) 7772-7780
    • (1991) J Bacteriol , vol.173 , pp. 7772-7780
    • Cirillo, J.D.1    Barletta, R.G.2    Bloom, B.R.3    Jacobs Jr., W.R.4
  • 14
    • 0026534015 scopus 로고
    • Isolation and analysis of IS6120, a new insertion sequence from Mycobacterium smegmatis
    • Guilhot C., Gicquel B., Davies J., and Martin C. Isolation and analysis of IS6120, a new insertion sequence from Mycobacterium smegmatis. Mol Microbiol 6 (1992) 107-113
    • (1992) Mol Microbiol , vol.6 , pp. 107-113
    • Guilhot, C.1    Gicquel, B.2    Davies, J.3    Martin, C.4
  • 15
  • 16
    • 0031885217 scopus 로고    scopus 로고
    • IS1549 from Mycobacterium smegmatis forms long direct repeats upon insertion
    • Plikaytis B.B., Crawford J.T., and Shinnick T.M. IS1549 from Mycobacterium smegmatis forms long direct repeats upon insertion. J Bacteriol 180 (1998) 1037-1043
    • (1998) J Bacteriol , vol.180 , pp. 1037-1043
    • Plikaytis, B.B.1    Crawford, J.T.2    Shinnick, T.M.3
  • 17
    • 0141959306 scopus 로고    scopus 로고
    • A rifampin-hypersensitive mutant reveals differences between strains of Mycobacterium smegmatis and presence of a novel transposon, IS1623
    • Alexander D.C., Jones J.R., and Liu J. A rifampin-hypersensitive mutant reveals differences between strains of Mycobacterium smegmatis and presence of a novel transposon, IS1623. Antimicrob Agents Chemother 47 (2003) 3208-3213
    • (2003) Antimicrob Agents Chemother , vol.47 , pp. 3208-3213
    • Alexander, D.C.1    Jones, J.R.2    Liu, J.3
  • 19
    • 0028923695 scopus 로고
    • In vivo growth characteristics of leucine and methionine auxotrophic mutants of Mycobacterium bovis BCG generated by transposon mutagenesis
    • McAdam R.A., Weisbrod T.R., Martin J., Scuderi J.D., Brown A.M., Cirillo J.D., et al. In vivo growth characteristics of leucine and methionine auxotrophic mutants of Mycobacterium bovis BCG generated by transposon mutagenesis. Infect Immun 63 (1995) 1004-1012
    • (1995) Infect Immun , vol.63 , pp. 1004-1012
    • McAdam, R.A.1    Weisbrod, T.R.2    Martin, J.3    Scuderi, J.D.4    Brown, A.M.5    Cirillo, J.D.6
  • 20
    • 0030931885 scopus 로고    scopus 로고
    • Conditionally replicating mycobacteriophages: a system for transposon delivery to Mycobacterium tuberculosis
    • Bardarov S., Kriakov J., Carriere C., Yu S., Vaamonde C., McAdam R.A., et al. Conditionally replicating mycobacteriophages: a system for transposon delivery to Mycobacterium tuberculosis. Proc Natl Acad Sci USA 94 (1997) 10961-10966
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 10961-10966
    • Bardarov, S.1    Kriakov, J.2    Carriere, C.3    Yu, S.4    Vaamonde, C.5    McAdam, R.A.6
  • 22
    • 0000812428 scopus 로고    scopus 로고
    • Identification of a virulence gene cluster of Mycobacterium tuberculosis by signature-tagged transposon mutagenesis
    • Camacho L.R., Ensergueix D., Perez E., Gicquel B., and Guilhot C. Identification of a virulence gene cluster of Mycobacterium tuberculosis by signature-tagged transposon mutagenesis. Mol Microbiol 34 (1999) 257-267
    • (1999) Mol Microbiol , vol.34 , pp. 257-267
    • Camacho, L.R.1    Ensergueix, D.2    Perez, E.3    Gicquel, B.4    Guilhot, C.5
  • 23
    • 0034713825 scopus 로고    scopus 로고
    • Construction and application of mycobacterial reporter transposons
    • Machowski E.E., McAdam R.A., Derbyshire K.M., and Mizrahi V. Construction and application of mycobacterial reporter transposons. Gene 253 (2000) 67-75
    • (2000) Gene , vol.253 , pp. 67-75
    • Machowski, E.E.1    McAdam, R.A.2    Derbyshire, K.M.3    Mizrahi, V.4
  • 24
    • 0034133604 scopus 로고    scopus 로고
    • Transformation and transposition of the genome of Mycobacterium marinum
    • Talaat A.M., and Trucksis M. Transformation and transposition of the genome of Mycobacterium marinum. Am J Vet Res 61 (2000) 125-128
    • (2000) Am J Vet Res , vol.61 , pp. 125-128
    • Talaat, A.M.1    Trucksis, M.2
  • 25
    • 0035218317 scopus 로고    scopus 로고
    • Disruption of adhC reveals a large duplication in the Mycobacterium smegmatis mc(2)155 genome
    • Galamba A., Soetaert K., Wang X.M., De Bruyn J., Jacobs P., and Content J. Disruption of adhC reveals a large duplication in the Mycobacterium smegmatis mc(2)155 genome. Microbiology 147 (2001) 3281-3294
    • (2001) Microbiology , vol.147 , pp. 3281-3294
    • Galamba, A.1    Soetaert, K.2    Wang, X.M.3    De Bruyn, J.4    Jacobs, P.5    Content, J.6
  • 26
    • 33751008066 scopus 로고    scopus 로고
    • A derivative of Mycobacterium smegmatis mc(2)155 that lacks the duplicated chromosomal region
    • Warner D.F., Etienne G., Wang X.M., Matsoso L.G., Dawes S.S., Soetaert K., et al. A derivative of Mycobacterium smegmatis mc(2)155 that lacks the duplicated chromosomal region. Tuberculosis 86 (2006) 438-444
    • (2006) Tuberculosis , vol.86 , pp. 438-444
    • Warner, D.F.1    Etienne, G.2    Wang, X.M.3    Matsoso, L.G.4    Dawes, S.S.5    Soetaert, K.6
  • 27
    • 0025081151 scopus 로고
    • Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis
    • Snapper S.B., Melton R.E., Mustafa S., Kieser T., and Jacobs Jr. W.R. Isolation and characterization of efficient plasmid transformation mutants of Mycobacterium smegmatis. Mol Microbiol 4 (1990) 1911-1919
    • (1990) Mol Microbiol , vol.4 , pp. 1911-1919
    • Snapper, S.B.1    Melton, R.E.2    Mustafa, S.3    Kieser, T.4    Jacobs Jr., W.R.5
  • 28
    • 0002801951 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis: a once genetically intractable organism
    • Hatfull G.F., and Jacobs W.R.J. (Eds), ASM Press, Washington, DC
    • Jacobs W.R.J. Mycobacterium tuberculosis: a once genetically intractable organism. In: Hatfull G.F., and Jacobs W.R.J. (Eds). Molecular genetics of mycobacteria (2000), ASM Press, Washington, DC 1-16
    • (2000) Molecular genetics of mycobacteria , pp. 1-16
    • Jacobs, W.R.J.1
  • 29
    • 0035282553 scopus 로고    scopus 로고
    • Molecular and biochemical characterisation of Mycobacterium smegmatis alcohol dehydrogenase C
    • Galamba A., Soetaert K., Buyssens P., Monnaie D., Jacobs P., and Content J. Molecular and biochemical characterisation of Mycobacterium smegmatis alcohol dehydrogenase C. FEMS Microbiol Lett 196 (2001) 51-56
    • (2001) FEMS Microbiol Lett , vol.196 , pp. 51-56
    • Galamba, A.1    Soetaert, K.2    Buyssens, P.3    Monnaie, D.4    Jacobs, P.5    Content, J.6
  • 31
    • 0032508046 scopus 로고    scopus 로고
    • Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
    • Cole S.T., Brosch R., Parkhill J., Garnier T., Churcher C., Harris D., et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393 (1998) 537-544
    • (1998) Nature , vol.393 , pp. 537-544
    • Cole, S.T.1    Brosch, R.2    Parkhill, J.3    Garnier, T.4    Churcher, C.5    Harris, D.6
  • 32
    • 0002734187 scopus 로고
    • Bacterial insertion sequences
    • Berg D.E., and Howe M.M. (Eds), ASM Press, Washington, DC
    • Galas D.J., and Chandler M. Bacterial insertion sequences. In: Berg D.E., and Howe M.M. (Eds). Mobile DNA (1989), ASM Press, Washington, DC 109-162
    • (1989) Mobile DNA , pp. 109-162
    • Galas, D.J.1    Chandler, M.2
  • 33
    • 0001633794 scopus 로고    scopus 로고
    • Comparative genomics uncovers large tandem chromosomal duplications in Mycobacterium bovis BCG Pasteur
    • Brosch R., Gordon S.V., Buchrieser C., Pym A.S., Garnier T., and Cole S.T. Comparative genomics uncovers large tandem chromosomal duplications in Mycobacterium bovis BCG Pasteur. Yeast 17 (2000) 111-123
    • (2000) Yeast , vol.17 , pp. 111-123
    • Brosch, R.1    Gordon, S.V.2    Buchrieser, C.3    Pym, A.S.4    Garnier, T.5    Cole, S.T.6
  • 35
  • 36
    • 21344436643 scopus 로고    scopus 로고
    • The cell envelope structure and properties of Mycobacterium smegmatis mc(2)155: is there a clue for the unique transformability of the strain?
    • Etienne G., Laval F., Villeneuve C., Dinadayala P., Abouwarda A., Zerbib D., et al. The cell envelope structure and properties of Mycobacterium smegmatis mc(2)155: is there a clue for the unique transformability of the strain?. Microbiology 151 (2005) 2075-2086
    • (2005) Microbiology , vol.151 , pp. 2075-2086
    • Etienne, G.1    Laval, F.2    Villeneuve, C.3    Dinadayala, P.4    Abouwarda, A.5    Zerbib, D.6
  • 37
    • 34547604468 scopus 로고    scopus 로고
    • Noise in gene expression determines cell fate in Bacillus subtilis
    • Maamar H., Raj A., and Dubnau D. Noise in gene expression determines cell fate in Bacillus subtilis. Science 317 (2007) 526-529
    • (2007) Science , vol.317 , pp. 526-529
    • Maamar, H.1    Raj, A.2    Dubnau, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.