메뉴 건너뛰기




Volumn 159, Issue 6, 2008, Pages 423-431

ribB and ribBA genes from Acidithiobacillus ferrooxidans: expression levels under different growth conditions and phylogenetic analysis

Author keywords

Acidithiobacillus ferrooxidans; Gene expression; Phylogenetic analysis; ribB; ribBA

Indexed keywords

3,4 DIHYDROXY 2 BUTANONE 4 PHOSPHATE SYNTHASE; COPPER SULFATE; RNA; SYNTHETASE; UNCLASSIFIED DRUG; ZINC;

EID: 49549107285     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2008.04.002     Document Type: Article
Times cited : (6)

References (36)
  • 2
    • 4644268266 scopus 로고    scopus 로고
    • Copper ions stimulate polyphosphate degradation and phosphate efflux in Acidithiobacillus ferrooxidans
    • Alvarez S., and Jerez C.A. Copper ions stimulate polyphosphate degradation and phosphate efflux in Acidithiobacillus ferrooxidans. Applied and Environmental Microbiology 70 (2004) 5177-5182
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 5177-5182
    • Alvarez, S.1    Jerez, C.A.2
  • 3
    • 0000678343 scopus 로고    scopus 로고
    • Biosynthesis of riboflavin
    • Neidhart F.C., Curtiss III R., Ingraham J.L., Lin E.C.C., Low K.B., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., and Umbarger H.E. (Eds), American Society for Microbiology, Washington, DC
    • Bacher A., Eberhardt S., and Richter G. Biosynthesis of riboflavin. In: Neidhart F.C., Curtiss III R., Ingraham J.L., Lin E.C.C., Low K.B., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., and Umbarger H.E. (Eds). Escherichia coli and Salmonella typhimurium, Cellular and molecular biology (1996), American Society for Microbiology, Washington, DC 657-664
    • (1996) Escherichia coli and Salmonella typhimurium, Cellular and molecular biology , pp. 657-664
    • Bacher, A.1    Eberhardt, S.2    Richter, G.3
  • 5
    • 0031968623 scopus 로고    scopus 로고
    • Hemolytic properties and riboflavin synthesis of Helicobacter pylori: cloning and functional characterization of the ribA gene encoding GTP-cyclohydrolase II that confers hemolytic activity to Escherichia coli
    • Bereswill S., Fassbinder F., Volzing C., Covacci A., Haas R., and Kist M. Hemolytic properties and riboflavin synthesis of Helicobacter pylori: cloning and functional characterization of the ribA gene encoding GTP-cyclohydrolase II that confers hemolytic activity to Escherichia coli. Medical Microbiology and Immunology 186 (1998) 177-187
    • (1998) Medical Microbiology and Immunology , vol.186 , pp. 177-187
    • Bereswill, S.1    Fassbinder, F.2    Volzing, C.3    Covacci, A.4    Haas, R.5    Kist, M.6
  • 6
    • 0030759086 scopus 로고    scopus 로고
    • Bioleaching: metal solubilization by microorganisms
    • Bosecker K. Bioleaching: metal solubilization by microorganisms. FEMS Microbiology Reviews 20 (1997) 591-604
    • (1997) FEMS Microbiology Reviews , vol.20 , pp. 591-604
    • Bosecker, K.1
  • 8
    • 0021048520 scopus 로고
    • Energy conservation in acidophilic bacteria
    • Cobley J.G., and Cox J.C. Energy conservation in acidophilic bacteria. Microbiological Reviews 47 (1983) 579-595
    • (1983) Microbiological Reviews , vol.47 , pp. 579-595
    • Cobley, J.G.1    Cox, J.C.2
  • 10
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32 (2004) 1792-1797
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 11
    • 0034668291 scopus 로고    scopus 로고
    • Structural and functional analysis of the riboflavin synthesis genes encoding GTP cyclohydrolase II (ribA), DHBP synthase (ribBA), riboflavin synthase (ribC), and riboflavin deaminase/reductase (ribD) from Helicobacter pylori strain P1
    • Fassbinder F., Kist M., and Bereswill S. Structural and functional analysis of the riboflavin synthesis genes encoding GTP cyclohydrolase II (ribA), DHBP synthase (ribBA), riboflavin synthase (ribC), and riboflavin deaminase/reductase (ribD) from Helicobacter pylori strain P1. FEMS Microbiology Letters 191 (2000) 191-197
    • (2000) FEMS Microbiology Letters , vol.191 , pp. 191-197
    • Fassbinder, F.1    Kist, M.2    Bereswill, S.3
  • 12
    • 0000122573 scopus 로고
    • PHYLIP - phylogeny inference package (version 3.2)
    • Felsenstein J. PHYLIP - phylogeny inference package (version 3.2). Cladistics 5 (1989) 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 13
    • 0020478725 scopus 로고
    • Mercuric reductase. Purification and characterization of a transposon-encoded flavoprotein containing an oxidation-reduction-active disulfide
    • Fox B., and Walsh C.T. Mercuric reductase. Purification and characterization of a transposon-encoded flavoprotein containing an oxidation-reduction-active disulfide. Journal of Biological Chemistry 257 (1982) 2498-2503
    • (1982) Journal of Biological Chemistry , vol.257 , pp. 2498-2503
    • Fox, B.1    Walsh, C.T.2
  • 14
    • 0025868444 scopus 로고
    • Differences in growth and iron oxidation among Thiobacillus ferrooxidans cultures in the presence of some toxic metals
    • Garcia Jr. O., and Silva L.L. Differences in growth and iron oxidation among Thiobacillus ferrooxidans cultures in the presence of some toxic metals. Biotechnology Letters 13 (1991) 567-570
    • (1991) Biotechnology Letters , vol.13 , pp. 567-570
    • Garcia Jr., O.1    Silva, L.L.2
  • 15
    • 0033230755 scopus 로고    scopus 로고
    • A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes
    • Gelfand M.S., Mironov A.A., Jomantas J., Kozlov Y.I., and Perumov D.A. A conserved RNA structure element involved in the regulation of bacterial riboflavin synthesis genes. Trends in Genetics 15 (1999) 439-442
    • (1999) Trends in Genetics , vol.15 , pp. 439-442
    • Gelfand, M.S.1    Mironov, A.A.2    Jomantas, J.3    Kozlov, Y.I.4    Perumov, D.A.5
  • 17
    • 0033823673 scopus 로고    scopus 로고
    • Ferrous iron-dependent volatilization of mercury by the plasma membrane of Thiobacillus ferrooxidans
    • Iwahori K., Takeuchi F., Kamimura K., and Sugio T. Ferrous iron-dependent volatilization of mercury by the plasma membrane of Thiobacillus ferrooxidans. Applied and Enviromental Microbiology 66 (2000) 3823-3827
    • (2000) Applied and Enviromental Microbiology , vol.66 , pp. 3823-3827
    • Iwahori, K.1    Takeuchi, F.2    Kamimura, K.3    Sugio, T.4
  • 18
    • 0036443915 scopus 로고    scopus 로고
    • Stimulated biosynthesis of flavins in Photobacterium phosphoreum IFO 13896 and the presence of complete rib operons in two species of luminous bacteria
    • Kasai S., and Sumimoto T. Stimulated biosynthesis of flavins in Photobacterium phosphoreum IFO 13896 and the presence of complete rib operons in two species of luminous bacteria. European Journal of Biochemistry 269 (2002) 5851-5860
    • (2002) European Journal of Biochemistry , vol.269 , pp. 5851-5860
    • Kasai, S.1    Sumimoto, T.2
  • 19
    • 0034065246 scopus 로고    scopus 로고
    • Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov
    • Kelly D.P., and Wood A.P. Reclassification of some species of Thiobacillus to the newly designated genera Acidithiobacillus gen. nov., Halothiobacillus gen. nov. and Thermithiobacillus gen. nov. International Journal of Systematic and Evolutionary Microbiology 50 (2000) 511-516
    • (2000) International Journal of Systematic and Evolutionary Microbiology , vol.50 , pp. 511-516
    • Kelly, D.P.1    Wood, A.P.2
  • 20
    • 0002523467 scopus 로고
    • The genera Thiobacillus and Thiomicrospira
    • Starr M.P., Stolp H., Truper H.G., Balows A., and Schegel H.G. (Eds), Springer-Verlag, Berlin
    • Kuenen J.G., and Tuovinen O.H. The genera Thiobacillus and Thiomicrospira. In: Starr M.P., Stolp H., Truper H.G., Balows A., and Schegel H.G. (Eds). The prokaryotes (1981), Springer-Verlag, Berlin 1023-1036
    • (1981) The prokaryotes , pp. 1023-1036
    • Kuenen, J.G.1    Tuovinen, O.H.2
  • 21
    • 0035155856 scopus 로고    scopus 로고
    • Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of riboflavin biosynthesis
    • Liao D.I., Calabrese J.C., Wawrzak Z., Viitanen P.V., and Jordan D.B. Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of riboflavin biosynthesis. Structure 9 1 (2001) 11-18
    • (2001) Structure , vol.9 , Issue.1 , pp. 11-18
    • Liao, D.I.1    Calabrese, J.C.2    Wawrzak, Z.3    Viitanen, P.V.4    Jordan, D.B.5
  • 22
    • 0036125156 scopus 로고    scopus 로고
    • Differential gene expression in response to copper in Acidithiobacillus ferrooxidans analyzed by RNA arbitrarily primed polymerase chain reaction
    • Paulino L.C., Mello M.P., and Ottoboni L.M.M. Differential gene expression in response to copper in Acidithiobacillus ferrooxidans analyzed by RNA arbitrarily primed polymerase chain reaction. Electrophoresis 23 (2002) 520-527
    • (2002) Electrophoresis , vol.23 , pp. 520-527
    • Paulino, L.C.1    Mello, M.P.2    Ottoboni, L.M.M.3
  • 24
    • 0024311588 scopus 로고
    • Cloning and expression of Thiobacillus ferrooxidans mercury ion resistance genes in Escherichia coli
    • Shiratori T., Inoue C., Sugawara K., Kusano T., and Kitagawa Y. Cloning and expression of Thiobacillus ferrooxidans mercury ion resistance genes in Escherichia coli. Journal of Bacteriology 171 (1989) 3458-3464
    • (1989) Journal of Bacteriology , vol.171 , pp. 3458-3464
    • Shiratori, T.1    Inoue, C.2    Sugawara, K.3    Kusano, T.4    Kitagawa, Y.5
  • 27
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignments through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 28
    • 0015273756 scopus 로고
    • Biology of Thiobacillus ferrooxidans in relation to the microbiological leaching of sulphide ore
    • Tuovinen O.H., and Kelly D.P. Biology of Thiobacillus ferrooxidans in relation to the microbiological leaching of sulphide ore. Zeitschrift für Allgemeine Mikrobiologie 12 (1972) 311-346
    • (1972) Zeitschrift für Allgemeine Mikrobiologie , vol.12 , pp. 311-346
    • Tuovinen, O.H.1    Kelly, D.P.2
  • 29
    • 9144245023 scopus 로고    scopus 로고
    • Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis
    • Valdés J., Veloso F., Jedlicki E., and Holmes D. Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis. BMC Genomics 4 (2003) 51-67
    • (2003) BMC Genomics , vol.4 , pp. 51-67
    • Valdés, J.1    Veloso, F.2    Jedlicki, E.3    Holmes, D.4
  • 30
    • 0037100667 scopus 로고    scopus 로고
    • Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation
    • Vitreschak A.G., Rodionov D.A., Mironov A.A., and Gelfand M.S. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Research 30 (2002) 3141-3151
    • (2002) Nucleic Acids Research , vol.30 , pp. 3141-3151
    • Vitreschak, A.G.1    Rodionov, D.A.2    Mironov, A.A.3    Gelfand, M.S.4
  • 31
    • 49549093287 scopus 로고    scopus 로고
    • Winderickx, J., Castro, J.M. (1994) Practical course in molecular biology of microorganisms, January 23-February 11, Universidade Federal de Ouro Preto - MG, pp. 59.
    • Winderickx, J., Castro, J.M. (1994) Practical course in molecular biology of microorganisms, January 23-February 11, Universidade Federal de Ouro Preto - MG, pp. 59.
  • 36
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide
    • Barciszewski J., and Clark B.F.C. (Eds), Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Zuker M., Mathews D.H., and Turner D.H. Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In: Barciszewski J., and Clark B.F.C. (Eds). RNA biochemistry and biotechnology, number 70 in Nato Science Series (1999), Kluwer Academic Publishers, Dordrecht, The Netherlands 11-43
    • (1999) RNA biochemistry and biotechnology, number 70 in Nato Science Series , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.