메뉴 건너뛰기




Volumn 25, Issue 1-2, 2007, Pages 1-9

Single-reaction for SNP genotyping on agarose gel by allele-specific PCR in black poplar (Populus nigra L.)

Author keywords

Allele specific PCR; Destabilizing mismatch; PAMSA; SNP genotyping; Tailed primers

Indexed keywords

POPULUS NIGRA;

EID: 49549085554     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-007-0003-6     Document Type: Article
Times cited : (35)

References (28)
  • 2
    • 29144476591 scopus 로고    scopus 로고
    • Robust allele-specific polymerase chain reaction markers developed for single nucleotide polymorphisms in expressed barley sequences
    • PC Bundock MJ Cross FM Shapter RJ Henry 2005 Robust allele-specific polymerase chain reaction markers developed for single nucleotide polymorphisms in expressed barley sequences Theor Appl Genet 112 358 365
    • (2005) Theor Appl Genet , vol.112 , pp. 358-365
    • Bundock, P.C.1    Cross, M.J.2    Shapter, F.M.3    Henry, R.J.4
  • 3
    • 0033560952 scopus 로고    scopus 로고
    • Nucleotide analogs facilitate base conversion with 3′ mismatch primers
    • JP Day D Bergstrom RP Hammer F Barany 1999 Nucleotide analogs facilitate base conversion with 3′ mismatch primers Nucl Acids Res 27 1810 1818
    • (1999) Nucl Acids Res , vol.27 , pp. 1810-1818
    • Day, J.P.1    Bergstrom, D.2    Hammer, R.P.3    Barany, F.4
  • 4
    • 0025786744 scopus 로고
    • Simultaneous detection of multiple single-base alleles at a polymorphic site
    • C Dutton SS Sommer 1991 Simultaneous detection of multiple single-base alleles at a polymorphic site BioTechniques 11 700 7002
    • (1991) BioTechniques , vol.11 , pp. 700-7002
    • Dutton, C.1    Sommer, S.S.2
  • 6
    • 0033046861 scopus 로고    scopus 로고
    • Single-tube genotyping without oligonucleotide probes
    • S Germer R Higuchi 1999 Single-tube genotyping without oligonucleotide probes Genome Res 9 72 78
    • (1999) Genome Res , vol.9 , pp. 72-78
    • Germer, S.1    Higuchi, R.2
  • 7
    • 0012339256 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms: A new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants
    • PK Gupta JK Roy M Prasad 2001 Single nucleotide polymorphisms: a new paradigm for molecular marker technology and DNA polymorphism detection with emphasis on their use in plants Curr Sci India 80 524 535
    • (2001) Curr Sci India , vol.80 , pp. 524-535
    • Gupta, P.K.1    Roy, J.K.2    Prasad, M.3
  • 8
    • 0035010640 scopus 로고    scopus 로고
    • Automation in genotyping of single nucleotide polymorphisms
    • IG Gut 2001 Automation in genotyping of single nucleotide polymorphisms Hum Mutat 17 475 492
    • (2001) Hum Mutat , vol.17 , pp. 475-492
    • Gut, I.G.1
  • 9
    • 27244436959 scopus 로고    scopus 로고
    • A simple method to score single nucleotide polymorphisms based on allele-specific PCR and primer-induced fragment-length variation
    • B Hansson A Kawabe 2005 A simple method to score single nucleotide polymorphisms based on allele-specific PCR and primer-induced fragment-length variation Mol Ecol Notes 5 692 696
    • (2005) Mol Ecol Notes , vol.5 , pp. 692-696
    • Hansson, B.1    Kawabe, A.2
  • 12
    • 13244283273 scopus 로고    scopus 로고
    • High-throughput detection of multiple genetic polymorphisms influencing drug metabolism with mismatch primers in allele-specific polymerase chain reaction
    • A Ishiguro T Kubota Y Soya H Sasaki O Yagyu Y Takarada 2005 High-throughput detection of multiple genetic polymorphisms influencing drug metabolism with mismatch primers in allele-specific polymerase chain reaction Anal Biochem 337 256 261
    • (2005) Anal Biochem , vol.337 , pp. 256-261
    • Ishiguro, A.1    Kubota, T.2    Soya, Y.3    Sasaki, H.4    Yagyu, O.5    Takarada, Y.6
  • 13
    • 0036950237 scopus 로고    scopus 로고
    • Genetic analysis of Vrn-B1 for vernalization requirement by using linked dCAPS markers in bread wheat (Triticum aestivum L.)
    • K Iwaki J Nishida T Yanagisawa H Yoshida K Kato 2002 Genetic analysis of Vrn-B1 for vernalization requirement by using linked dCAPS markers in bread wheat (Triticum aestivum L.) Theor Appl Genet 104 571 576
    • (2002) Theor Appl Genet , vol.104 , pp. 571-576
    • Iwaki, K.1    Nishida, J.2    Yanagisawa, T.3    Yoshida, H.4    Kato, K.5
  • 14
    • 18144396218 scopus 로고    scopus 로고
    • SNP identification and SNAP marker development for a GmNARK gene controlling supernodulation in soybean
    • MY Kim K Van P Lestari JK Moon SH Lee 2005 SNP identification and SNAP marker development for a GmNARK gene controlling supernodulation in soybean Theor Appl Genet 110 1003 1010
    • (2005) Theor Appl Genet , vol.110 , pp. 1003-1010
    • Kim, M.Y.1    Van, K.2    Lestari, P.3    Moon, J.K.4    Lee, S.H.5
  • 15
    • 0025305576 scopus 로고
    • Effects of primer-template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studies
    • S Kwok DE Kellogg N McKinney D Spasic L Goda C Levenson 1990 Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus type 1 model studies Nucl Acids Res 18 999 1005
    • (1990) Nucl Acids Res , vol.18 , pp. 999-1005
    • Kwok, S.1    Kellogg, D.E.2    McKinney, N.3    Spasic, D.4    Goda, L.5    Levenson, C.6
  • 16
    • 0030977752 scopus 로고    scopus 로고
    • Overlapping PCR for bidirectional PCR amplification of specific alleles: A rapid one-tube method for simultaneously differentiating homozygotes and heterozygotes
    • Q Liu EC Thorland JA Heit SS Sommer 1997 Overlapping PCR for bidirectional PCR amplification of specific alleles: a rapid one-tube method for simultaneously differentiating homozygotes and heterozygotes Genome Res 7 389 398
    • (1997) Genome Res , vol.7 , pp. 389-398
    • Liu, Q.1    Thorland, E.C.2    Heit, J.A.3    Sommer, S.S.4
  • 17
    • 0032077256 scopus 로고    scopus 로고
    • A robust method for the detecting single-nucleotide changes as polymorphic markers by PCR
    • SD Michaels RM Amisino 1998 A robust method for the detecting single-nucleotide changes as polymorphic markers by PCR Plant J 14 381 385
    • (1998) Plant J , vol.14 , pp. 381-385
    • Michaels, S.D.1    Amisino, R.M.2
  • 18
    • 0032078072 scopus 로고    scopus 로고
    • DCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: Experimental applications in Arabidopsis thaliana genetics
    • MM Neff JD Neff J Chory AE Pepper 1998 dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics Plant J 14 387 392
    • (1998) Plant J , vol.14 , pp. 387-392
    • Neff, M.M.1    Neff, J.D.2    Chory, J.3    Pepper, A.E.4
  • 19
    • 0036890406 scopus 로고    scopus 로고
    • Web-based primer design for single nucleotide polymorphism analysis
    • MM Neff E Turk M Kalishman 2002 Web-based primer design for single nucleotide polymorphism analysis Trends Genet 18 613 615
    • (2002) Trends Genet , vol.18 , pp. 613-615
    • Neff, M.M.1    Turk, E.2    Kalishman, M.3
  • 20
    • 0042712609 scopus 로고    scopus 로고
    • Improved PCR amplification of multiple specific alleles (PAMSA) using internally mismatched primers
    • R Okimoto JB Dodgson 1996 Improved PCR amplification of multiple specific alleles (PAMSA) using internally mismatched primers BioTechniques 21 20 26
    • (1996) BioTechniques , vol.21 , pp. 20-26
    • Okimoto, R.1    Dodgson, J.B.2
  • 21
    • 0035865322 scopus 로고    scopus 로고
    • A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
    • R Sachidanandam D Weissman SC Schmidt JM Kakol LD Stein G Marth 2001 A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms Nature 409 928 933
    • (2001) Nature , vol.409 , pp. 928-933
    • Sachidanandam, R.1    Weissman, D.2    Schmidt, S.C.3    Kakol, J.M.4    Stein, L.D.5    Marth, G.6
  • 22
    • 0034101951 scopus 로고    scopus 로고
    • Rapid genotyping of factor V Leiden mutation using single-tube bidirectional allele-specific amplification and automated ultrathin-layer agarose gel electrophoresis
    • M Sasvari-Szekely A Gerstner Z Ronai M Staub A Guttman 2000 Rapid genotyping of factor V Leiden mutation using single-tube bidirectional allele-specific amplification and automated ultrathin-layer agarose gel electrophoresis Electrophoresis 21 816 821
    • (2000) Electrophoresis , vol.21 , pp. 816-821
    • Sasvari-Szekely, M.1    Gerstner, A.2    Ronai, Z.3    Staub, M.4    Guttman, A.5
  • 23
    • 1642559189 scopus 로고    scopus 로고
    • Efficient validation of single nucleotide polymorphisms in plants by allele-specific PCR, with an example from barley
    • VD Soleimani BR Baum DA Johnson 2003 Efficient validation of single nucleotide polymorphisms in plants by allele-specific PCR, with an example from barley Plant Mol Biol Rep 21 281 288
    • (2003) Plant Mol Biol Rep , vol.21 , pp. 281-288
    • Soleimani, V.D.1    Baum, B.R.2    Johnson, D.A.3
  • 24
    • 0035654539 scopus 로고    scopus 로고
    • Single tube genotyping of sickle cell anaemia using PCR-based SNP analysis
    • CM Waterfall BD Cobb 2001 Single tube genotyping of sickle cell anaemia using PCR-based SNP analysis Nucl Acids Res 29 e119
    • (2001) Nucl Acids Res , vol.29 , pp. 119
    • Waterfall, C.M.1    Cobb, B.D.2
  • 25
    • 0036078925 scopus 로고    scopus 로고
    • SNP genotyping using single-tube fluorescent bidirectional PCR
    • CM Waterfall BD Cobb 2002 SNP genotyping using single-tube fluorescent bidirectional PCR BioTechniques 33 80 90
    • (2002) BioTechniques , vol.33 , pp. 80-90
    • Waterfall, C.M.1    Cobb, B.D.2
  • 26
    • 15444381323 scopus 로고    scopus 로고
    • Touchdown thermocycling program enables a robust single nucleotide polymorphism typing method based on allele-specific real-time polymerase chain reaction
    • WM Wu HJ Tsai JHS Pang HS Wang HS Hong YS Lee 2005 Touchdown thermocycling program enables a robust single nucleotide polymorphism typing method based on allele-specific real-time polymerase chain reaction Anal Biochem 339 290 296
    • (2005) Anal Biochem , vol.339 , pp. 290-296
    • Wu, W.M.1    Tsai, H.J.2    Pang, J.H.S.3    Wang, H.S.4    Hong, H.S.5    Lee, Y.S.6
  • 27
    • 2442548838 scopus 로고    scopus 로고
    • Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice
    • S Yamanaka I Nakamura KN Watanabe YI Sato 2004 Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice Theor Appl Genet 108 1200 1204
    • (2004) Theor Appl Genet , vol.108 , pp. 1200-1204
    • Yamanaka, S.1    Nakamura, I.2    Watanabe, K.N.3    Sato, Y.I.4
  • 28
    • 0037813062 scopus 로고    scopus 로고
    • Detection of single nucleotide polymorphism (SNP) controlling the waxy character in wheat by using a derived cleaved amplified polymorphic sequence (dCAPS) marker
    • T Yanagisawa C Kiribuchi-Otobe H Hirano Y Suzuki M Fujita 2003 Detection of single nucleotide polymorphism (SNP) controlling the waxy character in wheat by using a derived cleaved amplified polymorphic sequence (dCAPS) marker Theor Appl Genet 107 84 88
    • (2003) Theor Appl Genet , vol.107 , pp. 84-88
    • Yanagisawa, T.1    Kiribuchi-Otobe, C.2    Hirano, H.3    Suzuki, Y.4    Fujita, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.