Nucleotide analogs facilitate base conversion with 3' mismatch primers

Nucleic Acids Research

Volumn 27, Issue 8, 1999, Pages 1810-1818

  Day, Joseph P ^a   Bergstrom, Donald ^b   Hammer, Robert P ^c   Barany, Francis ^a  

^a WEILL CORNELL MEDICAL COLLEGE   (United States)

^b PURDUE UNIVERSITY   (United States)

^c LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; OLIGONUCLEOTIDE; PRIMER DNA;

ARTICLE; BASE MISPAIRING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 0033560952     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.8.1810     Document Type: Article

References (44)

1. Saiki, R.K., Bugawan, T.L., Horn, G.T., Mullis, K.B. and Erlich, H.A. (1986) Nature, 324, 163-166.
2. Sidransky, D., Tokino, T., Hamilton, S.R., Kinzler, K.W., Levin, B., Frost, P. and Vogelstein, B. (1992) Science, 256, 102-105.
3. Brennan, J.A., Mao, L., Hruban, R.H., Boyle, J.O., Eby, Y.J., Koch, W.M., Goodman, S.N. and Sidransky, D. (1995) N. Engl. J. Med., 332, 429-435.
4. Cha, R.S., Zarbl, H., Keohavong, P. and Thilly, W.G. (1992) PCR Methods Applicat., 2, 14-20.
5. Haliassos, A., Chomel, J.C., Grandjouan, S., Kruh, J., Kaplan, J.C. and Kitzis, A. (1989) Nucleic Acids Res., 17, 8093-8099.
6. Chen, Z.-Y. and Zarbl, H. (1997) Anal. Biochem., 244, 191-194.
7. Sandy, M.S., Chiocca, S.M. and Cerutti, P.A. (1992) Proc. Natl Acad. Sci. USA, 89, 890-894.
8. Pourzand, C. and Cerutti, P. (1993) Mutat. Res., 288, 113-121.
9. Kumar, R. and Barbacid, M. (1988) Oncogene, 3, 647-651.
10. Kumar, R. and Dunn, L.L. (1989) Oncogene Res., 4, 235-241.
11. Jacobson, D.R. and Mills, N.E. (1994) Oncogene, 9, 553-563.
12. Jacobson, D.R. and Moskovits, T. (1992) PCR Methods Applicat., 1, 299.
13. Chen, J. and Viola, M.V. (1991) Anal. Biochem., 195, 51-56.
14. Di Giuseppe, J.A., Hruban, R.H., Offerhaus, G.J., Clement, M.J., van den Berg, F.M., Cameron, J.L. and van Mansfeld, A.D. (1994) Am. J. Pathol., 144, 889-895.
15. Kahn, S.M., Jiang, W., Culbertson, T.A., Weinstein, B., Williams, G.M., Tomita, N. and Ronai, Z. (1991) Oncogene, 6, 1079-1083.
16. Levi, S., Urbano-Ispizua, A., Gill, R., Thomas, D.M., Gilbertson, J., Foster, C. and Marshall, C.J. (1991) Cancer Res., 51, 3497-3502.
17. Mitsudomi, T., Viallet, J., Mulshine, J.L., Linnoila, R.I., Minna, J.D. and Gazdar, A.F. (1991) Oncogene, 6, 1353-1362.
18. Hattori, M., Nanko, S., Dai, X.Y., Fukuda, R. and Kazamatsuri, H. (1994) Biochem. Biophys. Res. Commun., 202, 757-763.
19. O'Dell, S.D., Humphries, S.E. and Day, I.N. (1996) Genome Res., 6, 558-568.
20. Hodanova, K., Hrebicek, M., Cervenkova, M., Aerts, J.M. and Zeman, J. (1997) J. Inherit. Metab. Dis., 20, 611-612.
21. Hoops, G.C., Zhang, P., Johnson, W.T., Paul, N., Bergstrom, D.E. and Davisson, V.J. (1997) Nucleic Acids Res., 25, 4866-4871.
22. Brown, D.M. and Lin, P.K.T. (1991) Carbohydrate Res., 216, 129-139.
23. Bergstrom, D.E., Zhang, P. and Johnson, W.T. (1996) Nucleosides Nucleotides, 15, 59-68.
24. Bergstrom, D.E., Zhang, P., Toma, P.H., Andrews, P.C. and Nichols, R. (1995) J. Am. Chem. Soc., 117, 1201-1209.
25. Zhang, P., Johnson, W.T., Klewer, D., Paul, N., Hoops, G., Davisson, V.J. and Bergstrom, D.E. (1998) Nucleic Acids Res., 26, 2208-2215.
26. Hill, F., Loakes, D. and Brown, D.M. (1998) Proc. Natl Acad. Sci. USA, 95, 4258-4263.
27. Barany, F. (1991) Proc. Natl Acad. Sci. USA, 88, 189-193.
28. Barany, F. (1991) PCR Methods Applicat., 1, 5-16.
29. Day, D.J., Speiser, P.W., White, P.C. and Barany, F. (1995) Genomics, 29, 152-162.
30. Khanna, M., Park, P., Zirvi, M., Cao, W., Picon, A., Day, J., Paty, P. and Barany, F. (1999) Oncogene, 18, 27-38.
31. Johnson, W.T., Zhang, P. and Bergstrom, D.E. (1997) Nucleic Acids Res., 25, 559-567.
32. Pon, R.T., Usman, N. and Ogilvie, K.K. (1988) BioTechniques, 6, 768-775.
33. Day, J.P., Berstrom, D., Hammer, R.P. and Barany, F. (1999) Nucleic Acids Res., 8, 1819-1827.
34. Newton, C.R., Graham, A., Heptinstall, L.E., Powell, S.J., Summers, C., Kalsheker, N., Smith, J.C. and Markham, A.F. (1989) Nucleic Acids Res., 17, 2503-2516.
35. Anderson, J.A., Irish, J.C. and Ngan, B.Y. (1992) J. Otolaryngol., 21, 321-326.
36. Urban, T., Ricci, S., Grange, J.D., Lacave, R., Boudghene, F., Breittmayer, F., Languille, O., Roland, J. and Bernaudin, J.F. (1993) J. Natl Cancer Inst., 85, 2008-2012.
37. Ronai, Z. and Minamoto, T. (1997) Hum. Mutat., 10, 322-325.
38. Beutler, E., Gelbart, T. and West, C. (1990) Clin. Chim. Acta, 194, 161-166.
39. Hingorani, A.D. and Brown, M.J. (1995) Biochem. Biophys. Res. Commun., 213, 725-729.
40. Kuwata, S., Yanagisawa, M., Saeki, H., Nakagawa, H., Etoh, T., Tokunaga, K., Juji, T. and Shibata, Y. (1995) J. Allergy Clin. Immunol., 96, 1051-1060.
41. Nishiwaki, Y., Kamino, K., Yoshiiwa, A., Nagano, K., Takeda, M., Tanabe, H., Nishimura, T., Kobayashi, T., Yamamoto, H., Nonomura, Y., Yoneda, H., Sakai, T., Imagawa, M., Miki, T. and Ogihara, T. (1996) Clin. Genet., 49, 119-123.
42. Ishihara, M., Ohno, S., Ishida, T., Naruse, T., Kagiya, M., Mizuki, N., Maruya, E., Saji, H. and Inoko, H. (1997) Tissue Antigens, 49, 107-110.
43. Gotoda, T., Yamada, N., Murase, T., Shimano, H., Shimada, M., Harada, K., Kawamura, M., Kozaki, K. and Yazaki, Y. (1992) J. Lipid Res., 33, 1067-1072.
44. Athma, P., Fidahusein, N. and Swift, M. (1995) Biochem. Biophys. Res. Commun., 210, 982-986.