메뉴 건너뛰기




Volumn 86, Issue 4, 2008, Pages 322-330

Kinetics, substrate specificity, and stereospecificity of two new protein tyrosine phosphatase-like inositol polyphosphatases from Selenomonas lacticifex

Author keywords

Kinetics; myo inositol polyphosphate phosphatase; Phytase; Protein tyrosine phosphatase; Stereospecificity

Indexed keywords

ALCOHOLS; AMINES; AMINO ACIDS; BIOCHEMISTRY; CHROMATOGRAPHIC ANALYSIS; ION CHROMATOGRAPHY; ORGANIC ACIDS; SIGNAL TRANSDUCTION; SUGARS;

EID: 49249114927     PISSN: 08298211     EISSN: None     Source Type: Journal    
DOI: 10.1139/O08-095     Document Type: Article
Times cited : (10)

References (32)
  • 2
    • 3042521098 scopus 로고    scopus 로고
    • Improved prediction of signal peptides: SignalP 3.0
    • PMID:15223320, doi:10.1016/j.jmb.2004.05.028
    • Bendtsen, J.D., Nielson, H., Von Heijne, G., and Brunak, S. 2004. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340: 783-795. doi:10.1016/j.jmb.2004.05.028. PMID:15223320.
    • (2004) J. Mol. Biol , vol.340 , pp. 783-795
    • Bendtsen, J.D.1    Nielson, H.2    Von Heijne, G.3    Brunak, S.4
  • 3
    • 23144465987 scopus 로고    scopus 로고
    • SCRATCH: A protein structure and structural feature prediction server
    • PMID:15980571, doi:10.1093/nar/gki396
    • Cheng, J., Randall, A.Z., Sweredoski, M.J., and Baldi, P. 2005. SCRATCH: a protein structure and structural feature prediction server. Nucleic Acids Res. 33(Suppl 2): W72-W76. doi:10.1093/nar/gki396. PMID:15980571.
    • (2005) Nucleic Acids Res , vol.33 , Issue.SUPPL. 2
    • Cheng, J.1    Randall, A.Z.2    Sweredoski, M.J.3    Baldi, P.4
  • 4
    • 0042121237 scopus 로고    scopus 로고
    • Multiple sequence alignment with the Clustal series of programs
    • PMID:12824352, doi:10.1093/nar/gkg500
    • Chenna, R., Sugawara, H., Koike, T., Lopez, R., Gibson, T.J., Higgins, D.G., and Thompson, J.D. 2003. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31: 3497-3500. doi:10.1093/nar/gkg500. PMID:12824352.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3497-3500
    • Chenna, R.1    Sugawara, H.2    Koike, T.3    Lopez, R.4    Gibson, T.J.5    Higgins, D.G.6    Thompson, J.D.7
  • 5
    • 7944229708 scopus 로고    scopus 로고
    • Structures of Selenomonas ruminantium phytase in complex with persulfated phytate: DSP phytase fold and mechanism for sequential substrate hydrolysis
    • PMID:15530366, doi:10.1016/j.str.2004.08.010
    • Chu, H.M., Guo, R.T., Lin, T.W., Chou, C.C., Shr, H.L., Lai, H.L., et al. 2004. Structures of Selenomonas ruminantium phytase in complex with persulfated phytate: DSP phytase fold and mechanism for sequential substrate hydrolysis. Structure, 12: 2015-2024. doi:10.1016/j.str.2004.08.010. PMID:15530366.
    • (2004) Structure , vol.12 , pp. 2015-2024
    • Chu, H.M.1    Guo, R.T.2    Lin, T.W.3    Chou, C.C.4    Shr, H.L.5    Lai, H.L.6
  • 8
    • 0019888748 scopus 로고
    • Comparative model building of the mammalian serine proteases
    • PMID:7045378, doi:10.1016/0022-2836(81)90465- 4
    • Greer, J. 1981. Comparative model building of the mammalian serine proteases. J. Mol. Biol. 153: 1027-1042. doi:10.1016/0022-2836(81)90465- 4. PMID:7045378.
    • (1981) J. Mol. Biol , vol.153 , pp. 1027-1042
    • Greer, J.1
  • 9
    • 0037032255 scopus 로고    scopus 로고
    • Pathway of dephosphorylation of myo-inositol hexakisphosphate by phytases of legume seeds
    • PMID:12405789, doi:10.1021/jf025620t
    • Greiner, R., Alminger, M.L., Carlsson, N.G., Muzquiz, M., Burbano, C., Cuadrado, C., et al. 2002a. Pathway of dephosphorylation of myo-inositol hexakisphosphate by phytases of legume seeds. J. Agric. Food Chem. 50: 6865-6870. doi:10.1021/jf025620t. PMID:12405789.
    • (2002) J. Agric. Food Chem , vol.50 , pp. 6865-6870
    • Greiner, R.1    Alminger, M.L.2    Carlsson, N.G.3    Muzquiz, M.4    Burbano, C.5    Cuadrado, C.6
  • 10
    • 0036881265 scopus 로고    scopus 로고
    • The pathway of dephosphorylation of myo-inositol hexakisphosphate by phytate-degrading enzymes of different Bacillus spp
    • PMID:12556126, doi:10.1139/w02-097
    • Greiner, R., Farouk, A., Alminger, M.L., and Carlsson, N.G. 2002b. The pathway of dephosphorylation of myo-inositol hexakisphosphate by phytate-degrading enzymes of different Bacillus spp. Can. J. Microbiol. 48: 986-994. doi:10.1139/w02-097. PMID:12556126.
    • (2002) Can. J. Microbiol , vol.48 , pp. 986-994
    • Greiner, R.1    Farouk, A.2    Alminger, M.L.3    Carlsson, N.G.4
  • 11
    • 0019830545 scopus 로고
    • A new and convenient colorimetric determination of inorganic orthophosphate and its application to the assay of inorganic pyrophosphatase
    • PMID:6116463, doi:10.1016/0003-2697(81)90082-8
    • Heinonen, J.K., and Lahti, R.J. 1981. A new and convenient colorimetric determination of inorganic orthophosphate and its application to the assay of inorganic pyrophosphatase. Anal. Biochem. 113: 313-317. doi:10.1016/0003-2697(81)90082-8. PMID:6116463.
    • (1981) Anal. Biochem , vol.113 , pp. 313-317
    • Heinonen, J.K.1    Lahti, R.J.2
  • 12
    • 22744443710 scopus 로고    scopus 로고
    • Inositide evolution - Towards turtle domination?
    • PMID:15860522, doi:10.1113/jphysiol.2005.087387
    • Irvine, R.F. 2005. Inositide evolution - Towards turtle domination? J. Physiol. 566: 295-300. doi:10.1113/jphysiol.2005.087387. PMID:15860522.
    • (2005) J. Physiol , vol.566 , pp. 295-300
    • Irvine, R.F.1
  • 13
    • 0001426346 scopus 로고
    • 31P NMR, and Raman spectroscopy investigation
    • doi:10.1021/ja00529a043
    • 31P NMR, and Raman spectroscopy investigation. J. Am. Chem. Soc. 102: 3144-3148. doi:10.1021/ja00529a043.
    • (1980) J. Am. Chem. Soc , vol.102 , pp. 3144-3148
    • Isbrandt, L.R.1    Oertel, R.P.2
  • 14
    • 0033558605 scopus 로고    scopus 로고
    • Life among the primitives: Protein o-phosphatases in prokaryotes
    • PMID:10077542, doi:10.2741/Kennelly
    • Kennelly, P.J., and Potts, M. 1999. Life among the primitives: protein o-phosphatases in prokaryotes. Front. Biosci. 4: D372-D385. doi:10.2741/Kennelly. PMID:10077542.
    • (1999) Front. Biosci , vol.4
    • Kennelly, P.J.1    Potts, M.2
  • 15
    • 0036392241 scopus 로고    scopus 로고
    • Molecular and catalytic properties of phytate-degrading enzymes (phytases)
    • doi:10.1046/j.1365-2621.2002.00617.x
    • Konietzny, U., and Greiner, R. 2002. Molecular and catalytic properties of phytate-degrading enzymes (phytases). Int. J. Food Sci. Technol. 37: 791-812. doi:10.1046/j.1365-2621.2002.00617.x.
    • (2002) Int. J. Food Sci. Technol , vol.37 , pp. 791-812
    • Konietzny, U.1    Greiner, R.2
  • 16
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • PMID:5432063, doi:10.1038/227680a0
    • Laemmli, U.K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature, 227: 680-685. doi:10.1038/227680a0. PMID:5432063.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 17
    • 0345257904 scopus 로고    scopus 로고
    • The term phytase comprises several different classes of enzymes
    • PMID:14630039, doi:10.1016/j.bbrc.2003.09.176
    • Mullaney, E.J., and Ullah, A.H.J. 2003. The term phytase comprises several different classes of enzymes. Biochem. Biophys. Res. Commun. 312: 179-184. doi:10.1016/j.bbrc.2003.09.176. PMID:14630039.
    • (2003) Biochem. Biophys. Res. Commun , vol.312 , pp. 179-184
    • Mullaney, E.J.1    Ullah, A.H.J.2
  • 18
    • 33846677681 scopus 로고    scopus 로고
    • Diversity of phytases in the rumen
    • PMID:17186149, doi:10.1007/s00248-006-9147-4
    • Nakashima, B.A., McAllister, T.A., Sharma, R., and Selinger, L.B. 2007. Diversity of phytases in the rumen. Microb. Ecol. 53: 82-88. doi:10.1007/s00248-006-9147-4. PMID:17186149.
    • (2007) Microb. Ecol , vol.53 , pp. 82-88
    • Nakashima, B.A.1    McAllister, T.A.2    Sharma, R.3    Selinger, L.B.4
  • 20
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • PMID:9051728, doi:10. 1093/protein/10.1.1
    • Nielsen, H., Engelbrecht, J., Brunak, S., and Von Heijne, G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10: 1-6. doi:10. 1093/protein/10.1.1. PMID:9051728.
    • (1997) Protein Eng , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 21
    • 0024273151 scopus 로고
    • Gradient ion chromatography of inositol phosphates
    • PMID:3245565, doi:10.1016/0003- 2697(88)90374-0
    • Phillippy, B.Q., and Bland, J.M. 1988. Gradient ion chromatography of inositol phosphates. Anal. Biochem. 175: 162-166. doi:10.1016/0003- 2697(88)90374-0. PMID:3245565.
    • (1988) Anal. Biochem , vol.175 , pp. 162-166
    • Phillippy, B.Q.1    Bland, J.M.2
  • 22
    • 0036568279 scopus 로고    scopus 로고
    • Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
    • PMID:11933069, doi:10.1002/prot.10082
    • Pollastri, G., Przybylski, D., Rost, B., and Baldi, P. 2002. Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins, 47: 228-235. doi:10.1002/prot.10082. PMID:11933069.
    • (2002) Proteins , vol.47 , pp. 228-235
    • Pollastri, G.1    Przybylski, D.2    Rost, B.3    Baldi, P.4
  • 23
    • 34250815835 scopus 로고    scopus 로고
    • Kinetic and structural analysis of a bacterial protein tyrosine phosphatase-like myo-inositol polyphosphatase
    • PMID:17567745, doi:10.1110/ps. 062738307
    • Puhl, A.A., Gruninger, R.J., Greiner, R., Janzen, T.W., Mosimann, S.C., and Selinger, L.B. 2007. Kinetic and structural analysis of a bacterial protein tyrosine phosphatase-like myo-inositol polyphosphatase. Protein Sci. 16: 1368-1378. doi:10.1110/ps. 062738307. PMID:17567745.
    • (2007) Protein Sci , vol.16 , pp. 1368-1378
    • Puhl, A.A.1    Gruninger, R.J.2    Greiner, R.3    Janzen, T.W.4    Mosimann, S.C.5    Selinger, L.B.6
  • 24
    • 48949117581 scopus 로고    scopus 로고
    • A protein tyrosine phosphatase-like inositol polyphosphatase from Selenomonas ruminantium subsp. lactilytica has specificity for the 5-phosphate of myo-inositol hexakisphosphate
    • PMID:18358762, In press
    • Puhl, A.A., Greiner, R., and Selinger, L.B. 2008. A protein tyrosine phosphatase-like inositol polyphosphatase from Selenomonas ruminantium subsp. lactilytica has specificity for the 5-phosphate of myo-inositol hexakisphosphate. Int. J. Biochem. Cell Biol., In press. PMID:18358762.
    • (2008) Int. J. Biochem. Cell Biol
    • Puhl, A.A.1    Greiner, R.2    Selinger, L.B.3
  • 25
    • 0029036869 scopus 로고
    • Metabolism and biological activities of inositol pentakisphosphate and inositol hexakisphosphate
    • PMID:7543266, doi:10. 1016/0006-2952(95)00059-9
    • Sasakawa, N., Sharif, M., and Hanley, M.R. 1995. Metabolism and biological activities of inositol pentakisphosphate and inositol hexakisphosphate. Biochem. Pharmacol. 50: 137-146. doi:10. 1016/0006-2952(95)00059-9. PMID:7543266.
    • (1995) Biochem. Pharmacol , vol.50 , pp. 137-146
    • Sasakawa, N.1    Sharif, M.2    Hanley, M.R.3
  • 26
    • 78651176322 scopus 로고
    • Vitamin requirements of several cellulolytic bacteria
    • PMID: 14292981
    • Scott, H.W., and Dehority, B.A. 1965. Vitamin requirements of several cellulolytic bacteria. J. Bacteriol. 89: 1169-1175. PMID: 14292981.
    • (1965) J. Bacteriol , vol.89 , pp. 1169-1175
    • Scott, H.W.1    Dehority, B.A.2
  • 27
    • 0035087311 scopus 로고    scopus 로고
    • Assessing the omnipotence of inositol hexakisphosphate
    • PMID:11282453, doi:10.1016/S0898-6568(01) 00129-2
    • Shears, S.B. 2001. Assessing the omnipotence of inositol hexakisphosphate. Cell. Signal. 13: 151-158. doi:10.1016/S0898-6568(01) 00129-2. PMID:11282453.
    • (2001) Cell. Signal , vol.13 , pp. 151-158
    • Shears, S.B.1
  • 28
    • 0031764045 scopus 로고    scopus 로고
    • The serine, threonine, and/or tyrosine-specific protein kinases and protein phosphatases of prokaryotic organisms: A family portrait
    • PMID:9862122, doi:10.1111/j.1574-6976.1998.tb00369.x
    • Shi, L., Potts, M., and Kennelly, P.J. 1998. The serine, threonine, and/or tyrosine-specific protein kinases and protein phosphatases of prokaryotic organisms: a family portrait. FEMS Microbiol. Rev. 22: 229-253. doi:10.1111/j.1574-6976.1998.tb00369.x. PMID:9862122.
    • (1998) FEMS Microbiol. Rev , vol.22 , pp. 229-253
    • Shi, L.1    Potts, M.2    Kennelly, P.J.3
  • 29
    • 0000030118 scopus 로고    scopus 로고
    • Highperformance chromatographic separation of inositol phosphate isomers on strong anion exchange columns
    • doi:10.1021/jf9709257
    • Skoglund, E., Carlsson, N.G., and Sandberg, A.S. 1998. Highperformance chromatographic separation of inositol phosphate isomers on strong anion exchange columns. J. Agric. Food Chem. 46: 1877-1882. doi:10.1021/jf9709257.
    • (1998) J. Agric. Food Chem , vol.46 , pp. 1877-1882
    • Skoglund, E.1    Carlsson, N.G.2    Sandberg, A.S.3
  • 30
    • 0027232825 scopus 로고
    • Cloning, characterization, and overexpression of the phytase-encoding gene (phyA) of Aspergillus niger
    • PMID:8387447, doi:10.1016/0378-1119(93)90620-I
    • Van Hartingsveldt, W., Vanzeijl, C.M.J., Harteveld, G.M., Gouka, R.J., Suykerbuyk, M.E.G., Luiten, R.G.M., et al. 1993. Cloning, characterization, and overexpression of the phytase-encoding gene (phyA) of Aspergillus niger. Gene, 127: 87-94. doi:10.1016/0378-1119(93)90620-I. PMID:8387447.
    • (1993) Gene , vol.127 , pp. 87-94
    • Van Hartingsveldt, W.1    Vanzeijl, C.M.J.2    Harteveld, G.M.3    Gouka, R.J.4    Suykerbuyk, M.E.G.5    Luiten, R.G.M.6
  • 31
    • 0032779947 scopus 로고    scopus 로고
    • Phytase activity of Selenomonas ruminantium: A preliminary characterization
    • doi:10.1046/j.1365-2672.1999.00568.x
    • Yanke, L.J., Selinger, L.B., and Cheng, K.J. 1999. Phytase activity of Selenomonas ruminantium: a preliminary characterization. Lett. Appl. Microbiol. 29: 20-25. doi:10.1046/j.1365-2672.1999.00568.x.
    • (1999) Lett. Appl. Microbiol , vol.29 , pp. 20-25
    • Yanke, L.J.1    Selinger, L.B.2    Cheng, K.J.3
  • 32
    • 0036181649 scopus 로고    scopus 로고
    • Protein tyrosine phosphatases: Structure and function, substrate specificity, and inhibitor development
    • PMID:11807171, doi:10.1146/annurev. pharmtox.42.083001.144616
    • Zhang, Z.Y. 2002. Protein tyrosine phosphatases: structure and function, substrate specificity, and inhibitor development. Annu. Rev. Pharmacol. Toxicol. 42: 209-234. doi:10.1146/annurev. pharmtox.42.083001.144616. PMID:11807171.
    • (2002) Annu. Rev. Pharmacol. Toxicol , vol.42 , pp. 209-234
    • Zhang, Z.Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.