Genetic profiling of genes from the oxidative stress pathway among North and South Indians

Human Biology

Volumn 80, Issue 2, 2008, Pages 161-179

  Tiwari, A K ^a   Punia, S ^a   Juyal, R C ^b   Thelma, B K ^a  

^a UNIVERSITY OF DELHI   (India)

^b NATIONAL INSTITUTE OF IMMUNOLOGY   (India)

Author keywords

Nitric oxide synthase genes (NOS1, NOS2A, NOS3); Oxidative stress genes; Superoxide dismutase genes (SOD2, SOD3); Uncoupling protein genes (UCP1, UCP2); Vascular endothelial growth factor gene (VEGFA)

Indexed keywords

ALANINE; ENDOTHELIAL NITRIC OXIDE SYNTHASE; SUPEROXIDE DISMUTASE; SUPEROXIDE DISMUTASE 3; THREONINE; TUMOR NECROSIS FACTOR ALPHA; UNCOUPLING PROTEIN 1;

ADULT; ALLELE; ARTICLE; CASE CONTROL STUDY; DNA POLYMORPHISM; ETHNIC GROUP; FEMALE; GENE EXPRESSION PROFILING; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ISOLATION BY DISTANCE; GENETIC POLYMORPHISM; GENETIC TRAIT; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; HUMAN CELL; INDIAN; LANGUAGE; MALE; NORMAL HUMAN; OXIDATIVE STRESS;

ADULT; ALLELES; FEMALE; GENETIC MARKERS; GENETICS, POPULATION; GENOTYPE; HUMANS; INDIA; MALE; MIDDLE AGED; OXIDATIVE STRESS; POLYMORPHISM, GENETIC; PREVALENCE;

EID: 48749087538     PISSN: 00187143     EISSN: None     Source Type: Journal    
DOI: 10.3378/1534-6617(2008)80[161:GPOGFT]2.0.CO;2     Document Type: Article

References (33)

1. Agachan, B., H. Yilmaz, H. A. Ergen et al. 2005. Paraoxonase (PON1) 55 and 192 polymorphism and its effects to oxidant-antioxidant system in Turkish patients with type 2 diabetes mellitus. Physiol. Res. 54(3):287-293.
2. Basu, A., N. Mukherjee, S. Roy et al. 2003. Ethnic India: A genomic view, with special reference to peopling and structure. Genome Res. 13(10):2277-2290.
3. Chistyakov, D. A., K. V. Savost'anov, E. V. Zotova et al. 2001. Polymorphisms in the Mn-SOD and EC-SOD genes and their relationship to diabetic neuropathy in type 1 diabetes mellitus. BMC Med. Genet. 2:4.
4. Cordaux, R., E. Deepa, H. Vishwanathan et al. 2004. Genetic evidence for the demic diffusion of agriculture to India. Science 304(5674):1125.
5. Del Bo, R., M. Scarlato, S. Ghezzi et al. 2005. Vascular endothelial growth factor gene variability is associated with increased risk for AD. Ann. Neurol. 57(3):373-380.
6. Devlin, B., and N. Risch. 1995. A comparison of linkage disequilibrium measures for fine-scale mapping. Genomics 29(2):311-322.
7. Erlich, P. M., K. L. Lunetta, L. A. Cupples et al. 2006. Polymorphisms in the PON gene cluster are associated with Alzheimer disease. Hum. Mol. Genet. 15(1):77-85.
8. Finkel, T. 2003. Oxidant signals and oxidative stress. Curr. Opin. Cell Biol. 15(2):247-254.
9. Fong, C. S., R. M. Wu, J. C. Shieh et al. 2007. Pesticide exposure on southwestern Taiwanese with MnSOD and NQO1 polymorphisms is associated with increased risk of Parkinson's disease. Clin. Chim. Acta 378(1-2):136-141.
10. Forsberg, L., U. de Faire, and R. Morgenstern. 2001. Oxidative stress, human genetic variation, and disease. Arch. Biochem. Biophys. 389(1):84-93.
11. Hori, H., O. Ohmori, T. Shinkai et al. 2000. Manganese superoxide dismutase gene polymorphism and schizophrenia: Relation to tardive dyskinesia. Neuropsychopharmacology 23:170-177.
12. Hori, M., K. Oniki, K. Ueda et al. 2007. Combined glutathione S-transferase T1 and M1 positive genotypes afford protection against type 2 diabetes in Japanese. Pharmacogenomics 8(10):1307-1314.
13. Houstis, N., E. D. Rosen, and E. S. Lander. 2006. Reactive oxygen species have a causal role in multiple forms of insulin resistance. Nature 440(7086):944-948.
14. Hunter, D. J. 2005. Gene-environment interactions in human diseases. Nat. Rev. Genet. 6(4):287-298.
15. Knight, J. C. 2005. Regulator polymorphisms underlying complex disease traits. J. Mol. Med. 83:97-109.
16. Laws, S. M., R. Perneczky, S. Wagenpfeil et al. 2005. TNF polymorphisms in Alzheimer disease and functional implications on CSF beta-amyloid levels. Hum. Mutat. 26(1):29-35.
17. Lewontin, R. C. 1964. The interaction of selection and linkage. I. General considerations - heterotic models. Genetics 49(1):49-67.
18. Li, H. L., D. P. Liu, and C. C. Liang. 2003. Paraoxonase gene polymorphisms, oxidative stress, and diseases. J. Mol. Med. 81(12):766-779.
19. Lin, C. C., H. C. Wu, F. J. Tsai et al. 2003. Vascular endothelial growth factor gene -460 C/T polymorphism is a biomarker for prostate cancer. Urology 62:374-377.
20. Mariani, E., M. C. Polidori, A. Cherubini et al. 2005. Oxidative stress in brain aging, neurodegenerative and vascular diseases: An overview. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 827(1):65-75.
21. Matsunaga-Irie, S., T. Maruyama, Y. Yamamoto et al. 2004. Relation between development of nephropathy and the p22phox C242T and receptor for advanced glycation end product G1704T gene polymorphisms in type 2 diabetic patients. Diabetes Care 27(2):303-307.
22. Pae, C. U., H. S. Yu, J. J. Kim et al. 2004. Quinone oxidoreductase (NQO1) gene polymorphism (609C/T) may be associated with tardive dyskinesia, but not with the development of schizophrenia. Int. J. Neuropsychopharmacol. 7:495-500.
23. Ramos, E. M., M. T. Lin, E. B. Larson et al. 2006. Tumor necrosis factor alpha and interleukin 10 promoter region polymorphisms and risk of late-onset Alzheimer disease. Arch. Neurol. 63(8):1165-1169.
24. Renner, W., S. Kotschan, C. Hoffmann et al. 2000. A common 936 C/T mutation in the gene for vascular endothelial growth factor is associated with vascular endothelial growth factor plasma levels. J. Vasc. Res. 37:443-448.
25. Rolo, A. P., and C. M. Palmeira. 2006. Diabetes and mitochondrial function: Role of hyperglycemia and oxidative stress. Toxicol. Appl. Pharmacol. 212(2):167-178.
26. Rosenberg, N. A., S. Mahajan, C. Gonzalez-Quevedo et al. 2006. Low levels of genetic divergence across geographically and linguistically diverse populations from India. PLoS Genet. 2(12):e215.
27. Spalletta, G., S. Bernardini, L. Bellincampi et al. 2007. Glutathione S-transferase P1 and T1 gene polymorphisms predict longitudinal course and age at onset of Alzheimer disease. Am. J. Geriatr. Psychiatr. 15(10):879-887.
28. Stephens, M., and P. P. Donnelly. 2003. Comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 73:1162-1169.
29. Stephens, M., N. J. Smith, and P. Donnelly. 2001. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68:978-989.
30. Thelma, B. K., A. K. Tiwari, S. N. Deshpande et al. 2007. Genetic susceptibility to tardive dyskinesia in chronic schizophrenia subjects: Role of oxidative stress pathway genes. Schizophr. Res. 92(1-3):278-279.
31. Tiwari, A. K., P. Prasad, B. K. Thelma et al. 2008. Chronic renal insufficiency among Asian Indians with type 2 diabetes: Role of oxidative stress pathway genes. J. Diabetes Complications (in press).
32. Wolkow, C. A., and W. B. Iser. 2006. Uncoupling protein homologs may provide a link between mitochondria, metabolism, and lifespan. Aging Res. Rev. 5(2):196-208.
33. Zondervan, K. T., and L. R. Cardon. 2004. The complex interplay among factors that influence allelic association. Nat. Rev. Genet. 5(2):89-100.