-
1
-
-
13944267593
-
Origin of psychrophiles
-
Levin, S. A, Colwell, R, Dailey, G, Lubchenco, J, Mooney, H. A, Schulze, E. D, and Tilman, G. D, Eds, Academic Press, San Diego
-
Morita, R. Y., and Moyer, C. L. (2000) Origin of psychrophiles. In Encyclopedia of biodiversity (Levin, S. A., Colwell, R., Dailey, G., Lubchenco, J., Mooney, H. A., Schulze, E. D., and Tilman, G. D., Eds.) Vol. 4, pp 917-924, Academic Press, San Diego.
-
(2000)
Encyclopedia of biodiversity
, vol.4
, pp. 917-924
-
-
Morita, R.Y.1
Moyer, C.L.2
-
2
-
-
0034568704
-
Cold adapted enzymes
-
Smalas, A. O., Leiros, H. K., Os, V., and Willassen, N. P. (2000) Cold adapted enzymes. Biotechnol. Annu. Rev. 6, 1-57.
-
(2000)
Biotechnol. Annu. Rev
, vol.6
, pp. 1-57
-
-
Smalas, A.O.1
Leiros, H.K.2
Os, V.3
Willassen, N.P.4
-
3
-
-
0036568335
-
Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes
-
Gianese, G., Bossa, F., and Pascarella, S. (2002) Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes. Proteins 47, 236-249.
-
(2002)
Proteins
, vol.47
, pp. 236-249
-
-
Gianese, G.1
Bossa, F.2
Pascarella, S.3
-
4
-
-
1842509102
-
Psychrophilic enzymes: Hot topics in cold adaptation
-
Feller, G., and Gerday, C. (2003) Psychrophilic enzymes: Hot topics in cold adaptation. Nat. Rev. Microbiol. 1, 200-208.
-
(2003)
Nat. Rev. Microbiol
, vol.1
, pp. 200-208
-
-
Feller, G.1
Gerday, C.2
-
6
-
-
0035843136
-
Combinatorial and computational challenges for biocatalyst design
-
Arnold, F. H. (1996) Combinatorial and computational challenges for biocatalyst design. Nature 409, 253-257.
-
(1996)
Nature
, vol.409
, pp. 253-257
-
-
Arnold, F.H.1
-
7
-
-
0035252648
-
How enzymes adapt: Lessons from directed evolution
-
Arnold, F. H., Wintrode, P. L., Miyazaki, K., and Gershenson, A. (2001) How enzymes adapt: Lessons from directed evolution. Trends Biochem. Sci. 26, 100-106.
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 100-106
-
-
Arnold, F.H.1
Wintrode, P.L.2
Miyazaki, K.3
Gershenson, A.4
-
8
-
-
0035712796
-
Directed enzyme evolution
-
Farinas, E., Butler, T., and Arnold, F. (2001) Directed enzyme evolution. Curr. Opin. Biotechnol. 12, 545-551.
-
(2001)
Curr. Opin. Biotechnol
, vol.12
, pp. 545-551
-
-
Farinas, E.1
Butler, T.2
Arnold, F.3
-
9
-
-
24944455200
-
Laboratory-directed protein evolution
-
Yuan, L., Kurek, I., English, J., and Keenan, R. (2005) Laboratory-directed protein evolution. Microbiol. Mol. Biol. Rev. 69, 373-392.
-
(2005)
Microbiol. Mol. Biol. Rev
, vol.69
, pp. 373-392
-
-
Yuan, L.1
Kurek, I.2
English, J.3
Keenan, R.4
-
10
-
-
33744512606
-
Directed evolution of enzymes and biosynthetic pathways
-
Johannes, T. W., and Zhao, H. (2006) Directed evolution of enzymes and biosynthetic pathways. Curr. Opin. Microbiol. 9, 261-267.
-
(2006)
Curr. Opin. Microbiol
, vol.9
, pp. 261-267
-
-
Johannes, T.W.1
Zhao, H.2
-
11
-
-
48649096561
-
Screening of enzyme variants for thermostability
-
Svendsen, A, Ed, pp, Marcel Dekker, New York
-
Kanaya, S. (2003) Screening of enzyme variants for thermostability. In Enzyme functionality: Design, Engineering and Screening (Svendsen, A., Ed.) pp 491-506, Marcel Dekker, New York.
-
(2003)
Enzyme functionality: Design, Engineering and Screening
, pp. 491-506
-
-
Kanaya, S.1
-
12
-
-
0027939197
-
A novel strategy for stabilization of Escherichia coli ribonuclease HI involving a screen for an intragenic suppressor of carboxyl-terminal delitions
-
Haruki, M., Noguchi, E., Akasako, A., Oobatake, M., Itaya, M., and Kanaya, S. (1994) A novel strategy for stabilization of Escherichia coli ribonuclease HI involving a screen for an intragenic suppressor of carboxyl-terminal delitions. J. Biol. Chem. 269, 26904-26911.
-
(1994)
J. Biol. Chem
, vol.269
, pp. 26904-26911
-
-
Haruki, M.1
Noguchi, E.2
Akasako, A.3
Oobatake, M.4
Itaya, M.5
Kanaya, S.6
-
13
-
-
0033787281
-
Enhancement of the enzymatic activity of ribonuclease HI from Thermus thermophilus HB8 with a suppressor mutation method
-
Hirano, N., Haruki, M., Morikawa, M., and Kanaya, S. (2000) Enhancement of the enzymatic activity of ribonuclease HI from Thermus thermophilus HB8 with a suppressor mutation method. Biochemistry 39, 13285-13294.
-
(2000)
Biochemistry
, vol.39
, pp. 13285-13294
-
-
Hirano, N.1
Haruki, M.2
Morikawa, M.3
Kanaya, S.4
-
14
-
-
0025740545
-
A combination of RNase H (rnh) and recBCD or sbcB mutations in Escherichia coli K12 adversely affects growth
-
Itaya, M., and Crouch, R. J. (1991) A combination of RNase H (rnh) and recBCD or sbcB mutations in Escherichia coli K12 adversely affects growth. Mol. Gen. Genet. 227, 424-432.
-
(1991)
Mol. Gen. Genet
, vol.227
, pp. 424-432
-
-
Itaya, M.1
Crouch, R.J.2
-
15
-
-
0001711937
-
Ribonuclease H
-
Linn, S. M, and Robert, R. J, Eds, pp, Cold Spring Harbor Laboratory Press, Plainview, NY
-
Crouch, R. J., and Dirksen, M. L. (1982) Ribonuclease H. In Nuclease (Linn, S. M., and Robert, R. J., Eds.) pp 211-241, Cold Spring Harbor Laboratory Press, Plainview, NY.
-
(1982)
Nuclease
, pp. 211-241
-
-
Crouch, R.J.1
Dirksen, M.L.2
-
16
-
-
0032838944
-
Molecular diversities of RNases H
-
Ohtani, N., Haruki, M., Morikawa, M., and Kanaya, S. (1999) Molecular diversities of RNases H. J. Biosci. Bioeng. 88, 12-19.
-
(1999)
J. Biosci. Bioeng
, vol.88
, pp. 12-19
-
-
Ohtani, N.1
Haruki, M.2
Morikawa, M.3
Kanaya, S.4
-
17
-
-
48649104841
-
-
Kogoma, T., and Foster, P. L. (1998) Physiological functions of E. coli RNase HI. In Ribonucleases H (Crouch, R. J., and Toulme, J. J., Eds.) pp 39-66, INSERM, Paris.
-
Kogoma, T., and Foster, P. L. (1998) Physiological functions of E. coli RNase HI. In Ribonucleases H (Crouch, R. J., and Toulme, J. J., Eds.) pp 39-66, INSERM, Paris.
-
-
-
-
18
-
-
0032912813
-
Isolation of RNase H genes that are essential for growth of Bacillus subtilis 168
-
Itaya, M., Omori, A., Kanaya, S., Crouch, R. J., Tanaka, T., and Kondo, K. (1999) Isolation of RNase H genes that are essential for growth of Bacillus subtilis 168. J. Bacteriol. 181, 2118-2123.
-
(1999)
J. Bacteriol
, vol.181
, pp. 2118-2123
-
-
Itaya, M.1
Omori, A.2
Kanaya, S.3
Crouch, R.J.4
Tanaka, T.5
Kondo, K.6
-
19
-
-
0033512305
-
Saccharomyces cerevisiae RNase H(35) functions in RNA primer removal during lagging-strand DNA synthesis, most efficiently in cooperation with Rad27 nuclease
-
Qiu, J., Qian, Y., Frank, P., Wintersberger, U., and Shen, B. (1999) Saccharomyces cerevisiae RNase H(35) functions in RNA primer removal during lagging-strand DNA synthesis, most efficiently in cooperation with Rad27 nuclease. Mol. Cell. Biol. 19, 8361-8371.
-
(1999)
Mol. Cell. Biol
, vol.19
, pp. 8361-8371
-
-
Qiu, J.1
Qian, Y.2
Frank, P.3
Wintersberger, U.4
Shen, B.5
-
20
-
-
0033756041
-
The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: Implications for roles of RNases H in DNA replication and repair
-
Arudchandran, A., Cerritelli, S., Narimatsu, S., Itaya, M., Shin, D. Y., Shimada, Y., and Crouch, R. J. (2000) The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: Implications for roles of RNases H in DNA replication and repair. Genes Cells 5, 789-802.
-
(2000)
Genes Cells
, vol.5
, pp. 789-802
-
-
Arudchandran, A.1
Cerritelli, S.2
Narimatsu, S.3
Itaya, M.4
Shin, D.Y.5
Shimada, Y.6
Crouch, R.J.7
-
21
-
-
0037032428
-
Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing a single ribonucleotide at the DNA-RNA junction with prokaryotic RNases HII
-
Haruki, M., Tsunaka, Y., Morikawa, M., and Kanaya, S. (2002) Cleavage of a DNA-RNA-DNA/DNA chimeric substrate containing a single ribonucleotide at the DNA-RNA junction with prokaryotic RNases HII. FEBS Lett. 531, 204-208.
-
(2002)
FEBS Lett
, vol.531
, pp. 204-208
-
-
Haruki, M.1
Tsunaka, Y.2
Morikawa, M.3
Kanaya, S.4
-
22
-
-
0037168516
-
Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts
-
Rydberg, B., and Game, J. (2002) Excision of misincorporated ribonucleotides in DNA by RNase H (type 2) and FEN-1 in cell-free extracts. Proc. Natl. Acad. Sci. U.S.A. 99, 16654-16659.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 16654-16659
-
-
Rydberg, B.1
Game, J.2
-
23
-
-
0345354684
-
Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice
-
Cerritelli, S. M., Frolova, E. G., Feng, C., Grinberg, A., Love, P. E., and Crouch, R. J. (2003) Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice. Mol. Cell 11, 807-815.
-
(2003)
Mol. Cell
, vol.11
, pp. 807-815
-
-
Cerritelli, S.M.1
Frolova, E.G.2
Feng, C.3
Grinberg, A.4
Love, P.E.5
Crouch, R.J.6
-
24
-
-
48649107821
-
-
Kanaya, S. (1998) Enzymatic activity and protein stability of E. coli ribonuclease HI. In Ribonucleases H (Crouch, R. J., and Toulme, J. J., Eds.) pp 1-38, INSERM, Paris.
-
Kanaya, S. (1998) Enzymatic activity and protein stability of E. coli ribonuclease HI. In Ribonucleases H (Crouch, R. J., and Toulme, J. J., Eds.) pp 1-38, INSERM, Paris.
-
-
-
-
25
-
-
34250810188
-
Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI
-
Tadokoro, T., You, D.-J., Abe, Y., Chon, H., Matsumura, H., Koga, Y., Takano, K., and Kanaya, S. (2007) Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI. Biochemistry 46, 7460-7468.
-
(2007)
Biochemistry
, vol.46
, pp. 7460-7468
-
-
Tadokoro, T.1
You, D.-J.2
Abe, Y.3
Chon, H.4
Matsumura, H.5
Koga, Y.6
Takano, K.7
Kanaya, S.8
-
26
-
-
0034038243
-
Characterization of ribonuclease HII from Escherichia coli overproduced in a soluble form
-
Ohtani, N., Haruki, M., Muroya, A., Morikawa, M., and Kanaya, S. (2000) Characterization of ribonuclease HII from Escherichia coli overproduced in a soluble form. J. Biochem. 127, 895-899.
-
(2000)
J. Biochem
, vol.127
, pp. 895-899
-
-
Ohtani, N.1
Haruki, M.2
Muroya, A.3
Morikawa, M.4
Kanaya, S.5
-
27
-
-
0002694056
-
A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction
-
Leung, D. W., Chen, E., and Goeddel, D. V. (1989) A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction. Technique 1, 11-15.
-
(1989)
Technique
, vol.1
, pp. 11-15
-
-
Leung, D.W.1
Chen, E.2
Goeddel, D.V.3
-
28
-
-
3042784274
-
Generating mutant libraries using error-prone PCR
-
Cirino, P. C., Mayer, K. M., and Umeno, D. (2003) Generating mutant libraries using error-prone PCR. Methods Mol. Biol. 231, 3-9.
-
(2003)
Methods Mol. Biol
, vol.231
, pp. 3-9
-
-
Cirino, P.C.1
Mayer, K.M.2
Umeno, D.3
-
29
-
-
0025326334
-
Gene splicing by overlap extension: Tailor-made genes using the polymerase chain reaction
-
Horton, R. M., Cai, Z. L., Ho, S. N., and Pease, L. R. (1990) Gene splicing by overlap extension: Tailor-made genes using the polymerase chain reaction. BioTechniques 8, 528-535.
-
(1990)
BioTechniques
, vol.8
, pp. 528-535
-
-
Horton, R.M.1
Cai, Z.L.2
Ho, S.N.3
Pease, L.R.4
-
30
-
-
0025877250
-
Stabilization of Escherichia coli ribonuclease H by introduction of an artificial disulfide bond
-
Kanaya, S., Katsuda, C., Kimura, S., Nakai, T., Kitakuni, E., Nakamura, H., Katayanagi, K., Morikawa, K., and Ikehara, M. (1991) Stabilization of Escherichia coli ribonuclease H by introduction of an artificial disulfide bond. J. Biol. Chem. 266, 6038-6044.
-
(1991)
J. Biol. Chem
, vol.266
, pp. 6038-6044
-
-
Kanaya, S.1
Katsuda, C.2
Kimura, S.3
Nakai, T.4
Kitakuni, E.5
Nakamura, H.6
Katayanagi, K.7
Morikawa, K.8
Ikehara, M.9
-
31
-
-
0025420076
-
Measuring and increasing protein stability
-
Pace, C. N. (1990) Measuring and increasing protein stability. Trends Biotechnol. 8, 93-98.
-
(1990)
Trends Biotechnol
, vol.8
, pp. 93-98
-
-
Pace, C.N.1
-
32
-
-
15244350748
-
Stabilization of the cold shock protein CspB from Bacillus subtilis by evolutionary optimization of Coulombic interactions
-
Wunderlich, M., Martin, A., and Schmid, F. X. (2005) Stabilization of the cold shock protein CspB from Bacillus subtilis by evolutionary optimization of Coulombic interactions. J. Mol. Biol. 347, 1063-1076.
-
(2005)
J. Mol. Biol
, vol.347
, pp. 1063-1076
-
-
Wunderlich, M.1
Martin, A.2
Schmid, F.X.3
-
33
-
-
33748942644
-
In vitro evolution of a hyperstable Gβ1 variant
-
Wunderlich, M., and Schmid, F. X. (2006) In vitro evolution of a hyperstable Gβ1 variant. J. Mol. Biol. 363, 545-557.
-
(2006)
J. Mol. Biol
, vol.363
, pp. 545-557
-
-
Wunderlich, M.1
Schmid, F.X.2
-
34
-
-
0029078751
-
High resistance of Escherichia coli ribonuclease HI variant with quintuple thermostabilizing mutations to thermal denaturation, acid denaturation, and proteolytic degradation
-
Akasako, A., Haruki, M., Oobatake, M., and Kanaya, S. (1995) High resistance of Escherichia coli ribonuclease HI variant with quintuple thermostabilizing mutations to thermal denaturation, acid denaturation, and proteolytic degradation. Biochemistry 34, 8115-8122.
-
(1995)
Biochemistry
, vol.34
, pp. 8115-8122
-
-
Akasako, A.1
Haruki, M.2
Oobatake, M.3
Kanaya, S.4
-
35
-
-
0029585945
-
Enhancement of protein stability by the combination of point mutations in T4 lysozyme is additive
-
Zhang, X. J., Baase, W. A., Shoichet, B. K., Wilson, K. P., and Matthews, B. W. (1995) Enhancement of protein stability by the combination of point mutations in T4 lysozyme is additive. Protein Eng. 8, 1017-1022.
-
(1995)
Protein Eng
, vol.8
, pp. 1017-1022
-
-
Zhang, X.J.1
Baase, W.A.2
Shoichet, B.K.3
Wilson, K.P.4
Matthews, B.W.5
-
36
-
-
0035712765
-
Heat labile ribonuclease HI from a psychrotrophic bacterium: Gene cloning, characterization and site-directed mutagenesis
-
Ohtani, N., Haruki, M., Morikawa, M., and Kanaya, S. (2001) Heat labile ribonuclease HI from a psychrotrophic bacterium: Gene cloning, characterization and site-directed mutagenesis. Protein Eng. 14, 975-982.
-
(2001)
Protein Eng
, vol.14
, pp. 975-982
-
-
Ohtani, N.1
Haruki, M.2
Morikawa, M.3
Kanaya, S.4
-
37
-
-
0027314187
-
Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core
-
Ishikawa, K., Nakamura, H., Morikawa, K., and Kanya, S. (1993) Stabilization of Escherichia coli ribonuclease HI by cavity-filling mutations within a hydrophobic core. Biochemistry 32, 6171-6178.
-
(1993)
Biochemistry
, vol.32
, pp. 6171-6178
-
-
Ishikawa, K.1
Nakamura, H.2
Morikawa, K.3
Kanya, S.4
-
38
-
-
0030802904
-
Conformational stabilities of Escherichia coli RNase HI variants with a series of amino acid substitutions at a cavity within the hydrophobic core
-
Akasako, A., Haruki, M., Oobatake, M., and Kanaya, S. (1997) Conformational stabilities of Escherichia coli RNase HI variants with a series of amino acid substitutions at a cavity within the hydrophobic core. J. Biol. Chem. 272, 18686-18693.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 18686-18693
-
-
Akasako, A.1
Haruki, M.2
Oobatake, M.3
Kanaya, S.4
-
39
-
-
0026095261
-
Importance of the positive charge cluster in Escherichia coli ribonuclease HI for the effective binding of the substrate
-
Kanaya, S., Katsuda-Nakai, C., and Ikehara, M. (1991) Importance of the positive charge cluster in Escherichia coli ribonuclease HI for the effective binding of the substrate. J. Biol. Chem. 266, 11621-11627.
-
(1991)
J. Biol. Chem
, vol.266
, pp. 11621-11627
-
-
Kanaya, S.1
Katsuda-Nakai, C.2
Ikehara, M.3
-
40
-
-
38449110077
-
Protein thermostabilization requires a fine-tuned placement of surface-charged residues
-
You, D.-J., Fukuchi, S., Nishikawa, K., Koga, Y., Takano, K., and Kanaya, S. (2007) Protein thermostabilization requires a fine-tuned placement of surface-charged residues. J. Biochem. 142, 507-516.
-
(2007)
J. Biochem
, vol.142
, pp. 507-516
-
-
You, D.-J.1
Fukuchi, S.2
Nishikawa, K.3
Koga, Y.4
Takano, K.5
Kanaya, S.6
-
41
-
-
0034100848
-
Two exposed amino acid residues confer thermostability on a cold shock protein
-
Perl, D., Mueller, U., Heinemann, U., and Schmid, F. X. (2000) Two exposed amino acid residues confer thermostability on a cold shock protein. Nat. Struct. Biol. 7, 380-383.
-
(2000)
Nat. Struct. Biol
, vol.7
, pp. 380-383
-
-
Perl, D.1
Mueller, U.2
Heinemann, U.3
Schmid, F.X.4
-
42
-
-
0023442217
-
Protein stability curves
-
Becktel, W. J., and Schellman, J. A. (1987) Protein stability curves. Biopolymers 26, 1859-1877.
-
(1987)
Biopolymers
, vol.26
, pp. 1859-1877
-
-
Becktel, W.J.1
Schellman, J.A.2
|