Fluorescence generation from tandem repeats of a malachite green RNA aptamer using rolling circle transcription

Bioorganic and Medicinal Chemistry Letters

Volumn 18, Issue 16, 2008, Pages 4562-4565

  Furukawa, Kazuhiro ^a,b   Abe, Hiroshi ^a   Abe, Naoko ^a   Harada, Mitsuru ^a,b   Tsuneda, Satoshi ^b   Ito, Yoshihiro ^a  

^a RIKEN   (Japan)

^b WASEDA UNIVERSITY   (Japan)

Author keywords

Amplification; Fluorescence; Nucleic acid; Polymerase; RNA

Indexed keywords

APTAMER; CIRCULAR DNA; MALACHITE GREEN; MALACHITE GREEN RNA APTAMER; RNA; RNA POLYMERASE; UNCLASSIFIED DRUG;

ARTICLE; DNA SEQUENCE; ESCHERICHIA COLI; FLUORESCENCE; RNA STRUCTURE; RNA TRANSCRIPTION; ROLLING CIRCLE TRANSCRIPTION; TANDEM REPEAT;

APTAMERS, NUCLEOTIDE; BASE SEQUENCE; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; FLUORESCENT DYES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHOSPHORYLATION; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA; ROSANILINE DYES; SPECTROMETRY, FLUORESCENCE; TANDEM REPEAT SEQUENCES; TRANSCRIPTION, GENETIC; VIRAL PROTEINS;

ESCHERICHIA COLI;

EID: 48649097165     PISSN: 0960894X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bmcl.2008.07.040     Document Type: Article

References (34)

1. Tuerk C., and Gold L. Science 249 (1990) 505
2. Ellington A.D., and Szostak J.W. Nature 346 (1990) 818
3. Famulok M., Hartig J.S., and Mayer G. Chem. Rev. 107 (2007) 3715
4. Kawazoe N., Teramoto N., Ichinari H., Imanishi Y., and Ito Y. Biomacromolecules 2 (2001) 681
5. Teramoto N., Ichinari H., Kawazoe N., Imanishi Y., and Ito Y. Biotechnol. Bioeng. 75 (2001) 463
6. Nishikawa F., Kakiuchi N., Funaji K., Fukuda K., Sekiya S., and Nishikawa S. Nucleic Acids Res. 31 (2003) 1935
7. Sudarsan N., Hammond M.C., Block K.F., Welz R., Barrick J.E., Roth A., and Breaker R.R. Science 314 (2006) 300
8. Welz R., and Breaker R.R. RNA 13 (2007) 573
9. Kwon M., and Strobel S.A. RNA 14 (2008) 25
10. Mandal M., Lee M., Barrick J.E., Weinberg Z., Emilsson G.M., Ruzzo W.L., and Breaker R.R. Science 306 (2004) 275
11. Fire A., and Xu S.Q. Proc. Natl. Acad. Sci. U.S.A. 92 (1995) 4641
12. Liu D.Y., Daubendiek S.L., Zillman M.A., Ryan K., and Kool E.T. J. Am. Chem. Soc. 118 (1996) 1587
13. Lindstrom U.M., Chandrasekaran R.A., Orbai L., Helquist S.A., Miller G.P., Oroudjev E., Hansma H.G., and Kool E.T. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 15953
14. Cho E.J., Yang L.T., Levy M., and Ellington A.D. J. Am. Chem. Soc. 127 (2005) 2022
15. Lin C.X., Wang X., Liu Y., Seeman N.C., and Yan H. J. Am. Chem. Soc. 129 (2007) 14475
16. Hartig J.S., and Kool E.T. Nucleic Acids Res. 32 (2004) e152
17. Cheglakov Z., Weizmann Y., Braunschweig A.B., Wilner O.I., and Willner I. Angew. Chem. Int. Ed. Engl. 47 (2008) 126
18. Daubendiek S.L., Ryan K., and Kool E.T. J. Am. Chem. Soc. 117 (1995) 7818
19. Diegelman A.M., and Kool E.T. Nucleic Acids Res. 26 (1998) 3235
20. Diegelman A.M., Daubendiek S.L., and Kool E.T. Biotechniques 25 (1998) 754
21. Diegelman A.M., and Kool E.T. Chem. Biol. 6 (1999) 569
22. Ohmichi T., and Kool E.T. Nucleic Acids Res. 28 (2000) 776
23. Ohmichi T., Maki A., and Kool E.T. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 54
24. Seyhan A.A., Vlassov A.V., and Johnston B.H. Oligonucleotides 16 (2006) 353
25. Babendure J.R., Adams S.R., and Tsien R.Y. J. Am. Chem. Soc. 125 (2003) 14716
26. Grate D., and Wilson C. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 6131
27. Nguyen D.H., DeFina S.C., Fink W.H., and Dieckmann T. J. Am. Chem. Soc. 124 (2002) 15081
28. Flinders J., DeFina S.C., Brackett D.M., Baugh C., Wilson C., and Dieckmann T. Chembiochem 5 (2004) 62
29. Stojanovic M.N., and Kolpashchikov D.M. J. Am. Chem. Soc. 126 (2004) 9266
30. Kolpashchikov D.M. J. Am. Chem. Soc. 127 (2005) 12442
31. Zuker M. Nucleic Acids Res. 31 (2003) 3406
32. Daubendiek, S. L. Ph.D. Thesis, University of Rochester, 1998.
33. Rubin E., Rumney S., Wang S.H., and Kool E.T. Nucleic Acids Res. 23 (1995) 3547
34. Abe H., Kondo Y., Jinmei H., Abe N., Furukawa K., Uchiyama A., Tsuneda S., Aikawa K., Matsumoto I., and Ito Y. Bioconjugate Chem. 19 (2008) 327