메뉴 건너뛰기




Volumn 19, Issue 1, 2008, Pages 327-333

Rapid DNA chemical ligation for amplification of RNA and DNA signal

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA;

EID: 38949192864     PISSN: 10431802     EISSN: None     Source Type: Journal    
DOI: 10.1021/bc700244s     Document Type: Article
Times cited : (25)

References (35)
  • 1
    • 0035776497 scopus 로고    scopus 로고
    • Methods for genotyping single nucleotide polymorphisms
    • Kwok, P. Y. (2001) Methods for genotyping single nucleotide polymorphisms. Annu. Rev. Genomics Hum. Genet. 2, 235-258.
    • (2001) Annu. Rev. Genomics Hum. Genet , vol.2 , pp. 235-258
    • Kwok, P.Y.1
  • 2
    • 0035134454 scopus 로고    scopus 로고
    • Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies
    • Shi, M. M. (2001) Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies. Clin. Chem. 47, 164-172.
    • (2001) Clin. Chem , vol.47 , pp. 164-172
    • Shi, M.M.1
  • 3
    • 0037974735 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping: Biochemistry, protocol, cost and throughput
    • Chen, X., and Sullivan, P. F. (2003) Single nucleotide polymorphism genotyping: biochemistry, protocol, cost and throughput. Pharmacogenomics J. 3, 77-96.
    • (2003) Pharmacogenomics J , vol.3 , pp. 77-96
    • Chen, X.1    Sullivan, P.F.2
  • 4
    • 0032839195 scopus 로고    scopus 로고
    • Detection of PCR products using self-probing amplicons and fluorescence
    • Whitcombe, D., Theaker, J., Guy, S. P., Brown, T., and Little, S. (1999) Detection of PCR products using self-probing amplicons and fluorescence. Nat. Biotechnol. 17, 804-807.
    • (1999) Nat. Biotechnol , vol.17 , pp. 804-807
    • Whitcombe, D.1    Theaker, J.2    Guy, S.P.3    Brown, T.4    Little, S.5
  • 6
    • 0030939593 scopus 로고    scopus 로고
    • Enhanced discrimination of single nucleotide polymorphisms by artificial mismatch hybridization
    • Guo, Z., Liu, Q., and Smith, L. M. (1997) Enhanced discrimination of single nucleotide polymorphisms by artificial mismatch hybridization. Nat. Biotechnol. 15, 331-335.
    • (1997) Nat. Biotechnol , vol.15 , pp. 331-335
    • Guo, Z.1    Liu, Q.2    Smith, L.M.3
  • 7
    • 0026056970 scopus 로고
    • Genetic disease detection and DNA amplification using cloned thermostable ligase
    • Barany, F. (1991) Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc. Natl. Acad. Sci. U.S.A. 88, 189-193.
    • (1991) Proc. Natl. Acad. Sci. U.S.A , vol.88 , pp. 189-193
    • Barany, F.1
  • 8
    • 0024559478 scopus 로고
    • Specificity of the nick-closing activity of bacteriophage T4 DNA ligase
    • Wu, D. Y., and Wallace, R. B. (1989) Specificity of the nick-closing activity of bacteriophage T4 DNA ligase. Gene 76, 245-54.
    • (1989) Gene , vol.76 , pp. 245-254
    • Wu, D.Y.1    Wallace, R.B.2
  • 9
    • 0033910579 scopus 로고    scopus 로고
    • Enhanced detection and distinction of RNA by enzymatic probe ligation
    • Nilsson, M., Barbany, G., Antson, D.-O., Gertow, K., and Landegren, U. (2000) Enhanced detection and distinction of RNA by enzymatic probe ligation. Nat. Biotechnol. 18, 791-793.
    • (2000) Nat. Biotechnol , vol.18 , pp. 791-793
    • Nilsson, M.1    Barbany, G.2    Antson, D.-O.3    Gertow, K.4    Landegren, U.5
  • 10
    • 0034121447 scopus 로고    scopus 로고
    • Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2
    • Favis, R., Day, J. P., Gerry, N. P., Phelan, C., Narod, S., and Barany, F. (2000) Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2. Nat. Biotechnol. 18, 561-564.
    • (2000) Nat. Biotechnol , vol.18 , pp. 561-564
    • Favis, R.1    Day, J.P.2    Gerry, N.P.3    Phelan, C.4    Narod, S.5    Barany, F.6
  • 11
    • 33750008390 scopus 로고    scopus 로고
    • Detecting RNA and DNA with templated chemical reactions
    • Silverman, A. P., and Kool, E. T. (2006) Detecting RNA and DNA with templated chemical reactions. Chem. Rev. 106, 3775-3789.
    • (2006) Chem. Rev , vol.106 , pp. 3775-3789
    • Silverman, A.P.1    Kool, E.T.2
  • 12
    • 4544357020 scopus 로고    scopus 로고
    • DNA-templated organic synthesis: Nature's strategy for controlling chemical reactivity applied to synthetic molecules
    • Li, X., and Liu, D. R. (2004) DNA-templated organic synthesis: Nature's strategy for controlling chemical reactivity applied to synthetic molecules. Angew. Chem., Int. Ed. 43, 4848-4870.
    • (2004) Angew. Chem., Int. Ed , vol.43 , pp. 4848-4870
    • Li, X.1    Liu, D.R.2
  • 13
    • 0032495766 scopus 로고    scopus 로고
    • Analysis of the structure and stability of a backbone-modified oligonucleotide: Implications for avoiding product inhibition in catalytic template-directed synthesis
    • Luo, P., Leitzel, J. C., Zhan, Z.-Y. J., and Lynn, D. G. (1998) Analysis of the structure and stability of a backbone-modified oligonucleotide: implications for avoiding product inhibition in catalytic template-directed synthesis. J. Am. Chem. Soc. 120, 3019-3031.
    • (1998) J. Am. Chem. Soc , vol.120 , pp. 3019-3031
    • Luo, P.1    Leitzel, J.C.2    Zhan, Z.-Y.J.3    Lynn, D.G.4
  • 14
    • 0024282471 scopus 로고
    • Chemical reactions within DNA duplexes. Cyanogen bromide as an effective oligodeoxyribonucleotide coupling agent
    • Sokolova, N. I., Ashirbekova, D. T., Dolinnaya, N. G., and Shabarova, Z. A. (1988) Chemical reactions within DNA duplexes. Cyanogen bromide as an effective oligodeoxyribonucleotide coupling agent. FEBS Lett. 232, 153-155.
    • (1988) FEBS Lett , vol.232 , pp. 153-155
    • Sokolova, N.I.1    Ashirbekova, D.T.2    Dolinnaya, N.G.3    Shabarova, Z.A.4
  • 15
    • 0025758126 scopus 로고
    • Chemical synthesis of oligodeoxynucleotide dumbbells
    • Ashley, G. W., and Kushlan, D. M. (1991) Chemical synthesis of oligodeoxynucleotide dumbbells. Biochemistry 30, 2927-2933.
    • (1991) Biochemistry , vol.30 , pp. 2927-2933
    • Ashley, G.W.1    Kushlan, D.M.2
  • 16
    • 0001741033 scopus 로고    scopus 로고
    • Chemical amplification through template-directed synthesis
    • Zhan, Z.-Y. J., and Lynn, D. G. (1997) Chemical amplification through template-directed synthesis. J. Am. Chem. Soc. 119, 12420-12421.
    • (1997) J. Am. Chem. Soc , vol.119 , pp. 12420-12421
    • Zhan, Z.-Y.J.1    Lynn, D.G.2
  • 17
    • 0032126515 scopus 로고    scopus 로고
    • Template-directed photoligation of oligodeoxyribonucleotides via 4-thiothymidine
    • Liu, J., and Taylor, J.-S. (1998) Template-directed photoligation of oligodeoxyribonucleotides via 4-thiothymidine. Nucleic Acids Res. 26, 3300-3304.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3300-3304
    • Liu, J.1    Taylor, J.-S.2
  • 18
    • 0034647214 scopus 로고    scopus 로고
    • Template-directed photoreversible ligation of deoxyoligonucleotides via 5-vinyldeoxyuridine
    • Fujimoto, K., Matsuda, S., Takahashi, N., and Saito, I. (2000) Template-directed photoreversible ligation of deoxyoligonucleotides via 5-vinyldeoxyuridine. J. Am. Chem. Soc. 122, 5646-5647.
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 5646-5647
    • Fujimoto, K.1    Matsuda, S.2    Takahashi, N.3    Saito, I.4
  • 19
    • 0036263805 scopus 로고    scopus 로고
    • Expanding the reaction scope of DNA-templated synthesis
    • Gartner, Z. J., Kanan, M. W., and Liu, D. R. (2002) Expanding the reaction scope of DNA-templated synthesis. Angew. Chem., Int. Ed. 41, 1796-1800.
    • (2002) Angew. Chem., Int. Ed , vol.41 , pp. 1796-1800
    • Gartner, Z.J.1    Kanan, M.W.2    Liu, D.R.3
  • 20
    • 0028362688 scopus 로고
    • Enhancement of selectivity in recognition of nucleic acids via chemical autoligation
    • Gryaznov, S. M., Schultz, R., Chaturvedi, S. K., and Letsinger, R. L. (1994) Enhancement of selectivity in recognition of nucleic acids via chemical autoligation. Nucleic Acids Res. 22, 2366-2369.
    • (1994) Nucleic Acids Res , vol.22 , pp. 2366-2369
    • Gryaznov, S.M.1    Schultz, R.2    Chaturvedi, S.K.3    Letsinger, R.L.4
  • 21
    • 0001697505 scopus 로고
    • Chemical ligation of oligonucleotides in the presence and absence of a template
    • Gryaznov, S. M., and Letsinger, R. L. (1993) Chemical ligation of oligonucleotides in the presence and absence of a template. J. Am. Chem. Soc. 115, 3808-3809.
    • (1993) J. Am. Chem. Soc , vol.115 , pp. 3808-3809
    • Gryaznov, S.M.1    Letsinger, R.L.2
  • 22
    • 0034829726 scopus 로고    scopus 로고
    • The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules
    • Gartner, Z. J., and Liu, D. R. (2001) The generality of DNA-templated synthesis as a basis for evolving non-natural small molecules. J. Am. Chem. Soc. 123, 6961-6963.
    • (2001) J. Am. Chem. Soc , vol.123 , pp. 6961-6963
    • Gartner, Z.J.1    Liu, D.R.2
  • 23
    • 0015519419 scopus 로고
    • Nucleophilic reactions of some nucleoside phosphorothioates
    • Chladek, S., and Nagyvary, J. (1972) Nucleophilic reactions of some nucleoside phosphorothioates. J. Am. Chem. Soc. 94, 2079-2785.
    • (1972) J. Am. Chem. Soc , vol.94 , pp. 2079-2785
    • Chladek, S.1    Nagyvary, J.2
  • 24
    • 0001595438 scopus 로고
    • A covalent lock for self-assembled oligonucleotide conjugates
    • Herrlein, M. K., Nelson, J. S., and Letsinger, R. L. (1995) A covalent lock for self-assembled oligonucleotide conjugates. J. Am. Chem. Soc. 117, 10151-10152.
    • (1995) J. Am. Chem. Soc , vol.117 , pp. 10151-10152
    • Herrlein, M.K.1    Nelson, J.S.2    Letsinger, R.L.3
  • 25
    • 0035130372 scopus 로고    scopus 로고
    • Nonenzymatic autoligation in direct three-color detection of RNA and DNA point mutations
    • Xu, Y., Karalkar, N. B., and Kool, E. T. (2001) Nonenzymatic autoligation in direct three-color detection of RNA and DNA point mutations. Nat. Biotechnol. 19, 148-152.
    • (2001) Nat. Biotechnol , vol.19 , pp. 148-152
    • Xu, Y.1    Karalkar, N.B.2    Kool, E.T.3
  • 26
    • 0034692373 scopus 로고    scopus 로고
    • Rapid and selective selenium-mediated autoligation of DNA strands
    • Xu, Y., and Kool, E. T. (2000) Rapid and selective selenium-mediated autoligation of DNA strands. J. Am. Chem. Soc. 122, 9040-9041.
    • (2000) J. Am. Chem. Soc , vol.122 , pp. 9040-9041
    • Xu, Y.1    Kool, E.T.2
  • 27
    • 0028568952 scopus 로고
    • Selective chemical autoligation on a double-stranded DNA template
    • Herrlein, M. K., and Letsinger, R. L. (1994) Selective chemical autoligation on a double-stranded DNA template. Nucleic Acids Res. 22, 5076-5078.
    • (1994) Nucleic Acids Res , vol.22 , pp. 5076-5078
    • Herrlein, M.K.1    Letsinger, R.L.2
  • 28
    • 11144318656 scopus 로고    scopus 로고
    • Efficient silencing of bcr/abl oncogene by single- and double-stranded siRNAs targeted against b2a2 transcripts
    • Rapozzi, V., and Xodo, L. E. (2004) Efficient silencing of bcr/abl oncogene by single- and double-stranded siRNAs targeted against b2a2 transcripts. Biochemistry 43, 16134-16141.
    • (2004) Biochemistry , vol.43 , pp. 16134-16141
    • Rapozzi, V.1    Xodo, L.E.2
  • 29
    • 7444243906 scopus 로고    scopus 로고
    • Destabilizing universal linkers for signal amplification in self-ligating probes for RNA
    • Abe, H., and Kool, E. T. (2004) Destabilizing universal linkers for signal amplification in self-ligating probes for RNA. J. Am. Chem. Soc. 126, 13980-13986.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 13980-13986
    • Abe, H.1    Kool, E.T.2
  • 30
    • 4043169784 scopus 로고    scopus 로고
    • Single-nucleotide-specific PNA-peptide ligation on synthetic and PCR DNA templates
    • Ficht, S., Mattes, A., and Seitz, O. (2004) Single-nucleotide-specific PNA-peptide ligation on synthetic and PCR DNA templates. J. Am. Chem. Soc. 126, 9970-9981.
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 9970-9981
    • Ficht, S.1    Mattes, A.2    Seitz, O.3
  • 31
    • 0032548015 scopus 로고    scopus 로고
    • Surface-promoted replication and exponential amplification of DNA analogs
    • Luther, A., Brandsch, R., and von Kiedrowski, G. (1998) Surface-promoted replication and exponential amplification of DNA analogs. Nature (London) 396, 245-248.
    • (1998) Nature (London) , vol.396 , pp. 245-248
    • Luther, A.1    Brandsch, R.2    von Kiedrowski, G.3
  • 32
    • 0037570831 scopus 로고    scopus 로고
    • PNA-based RNA-triggered drug-releasing system
    • Ma, Z., and Taylor, J.-S. (2003) PNA-based RNA-triggered drug-releasing system. Bioconjugate Chem. 14, 679-683.
    • (2003) Bioconjugate Chem , vol.14 , pp. 679-683
    • Ma, Z.1    Taylor, J.-S.2
  • 33
    • 0034824703 scopus 로고    scopus 로고
    • Nucleic acid triggered catalytic drug and probe release: A new concept for the design of chemotherapeutic and diagnostic agents
    • Ma, Z., and Taylor, J. S. (2001) Nucleic acid triggered catalytic drug and probe release: A new concept for the design of chemotherapeutic and diagnostic agents. Bioorg. Med. Chem. 9, 2501-2510.
    • (2001) Bioorg. Med. Chem , vol.9 , pp. 2501-2510
    • Ma, Z.1    Taylor, J.S.2
  • 34
  • 35
    • 33845444755 scopus 로고    scopus 로고
    • DNA-catalyzed transfer of a reporter group
    • Grossmann, T. N., and Seitz, O. (2006) DNA-catalyzed transfer of a reporter group. J. Am. Chem. Soc. 128, 15596-15597.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 15596-15597
    • Grossmann, T.N.1    Seitz, O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.