In vivo transcriptional profiling of Plasmodium falciparum

Malaria Journal

Volumn 3, Issue , 2004, Pages

  Daily, Johanna P ^a   Le Roch, Karine G ^d   Sarr, Ousmane ^c   Fang, Xuemin ^a   Zhou, Yingyao ^d   Ndir, Omar ^c   Mboup, Soulyemane ^c   Sultan, Ali ^a   Winzeler, Elizabeth A ^b,d   Wirth, Dyann F ^a  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c UNIVERSITÉ CHEIKH ANTA DIOP   (Senegal)

^d GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIGEN; MEMBRANE PROTEIN; RNA;

ARTICLE; BLOOD SAMPLING; CHROMOSOME 2; CONTROLLED STUDY; DNA MICROARRAY; DNA TRANSCRIPTION; GENOME ANALYSIS; HOST PATHOGEN INTERACTION; HUMAN; MALARIA; NONHUMAN; PARASITE CULTIVATION; PLASMODIUM FALCIPARUM; SEQUENCE ANALYSIS; STATISTICAL SIGNIFICANCE;

ANIMALS; GENE EXPRESSION PROFILING; HOST-PARASITE INTERACTIONS; HUMANS; MALARIA, FALCIPARUM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PARASITEMIA; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; RNA, PROTOZOAN; RNA, RIBOSOMAL; TRANSCRIPTION, GENETIC;

EID: 4844221167     PISSN: 14752875     EISSN: None     Source Type: Journal    
DOI: 10.1186/1475-2875-3-30     Document Type: Article

References (25)

1. Ben Mamoun C, Gluzman IY, Hott C, MacMillan SK, Amarakone AS, Anderson DL, Carlton JM, Dame JB, Chakrabarti D, Martin Brownstein B, Goldberg D: Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis. Mol Microbiol 2001, 39:26-36.
2. Le Roch KG, Zhou Y, Batalov S, Winzeler EA: Monitoring the chromosome 2 intraerythrocytic transcriptome of Plasmodium falciparum using oligonucleotide arrays. Am J Trop Med Hyg 2002, 67:233-243.
3. Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, Haynes JD, Moch JK, Muster N, Sacci JB, Tabb DL, Witney AA, Wolters D, Wu Y, Gardner MJ, Holder AA, Sinden RE, Yates JR, Carucci DJ: A proteomic view of the Plasmodium falciparum life cycle. Nature 2002, 419:520-526.
4. Bozdech Z, Zhu J, Joachimiak MP, Cohen FE, Pulliam B, DeRisi JL: Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biol 2003, 4:R9.
5. Heithoff DM, Conner CP, Hentschel U, Govantes F, Hanna PC, Mahan MJ: Coordinate intracellular expression of Salmonella genes induced during infection. J Bacteriol 1999, 181:799-807.
6. Chiang SL, Mekalanos JJ, Holden DW: In vivo genetic analysis of bacterial virulence. Annu Rev Microbiol 1999, 53:129-154.
7. Basso H, Rharbaoui F, Staendner LH, Medina E, Garcia-Del Portillo F, Guzman CA: Characterization of a novel intracellularly activated gene from Salmonella enterica serovar typhi. Infect Immun 2002, 70:5404-5411.
8. Boyce JD, Wilkie I, Harper M, Paustian ML, Kapur V, Adler B: Genomic scale analysis of Pasteurella multocida gene expression during growth within the natural chicken host. Infect Immun 2002, 70:6871-6879.
9. Le Roch KG, Zhou Y, Blair PL, Grainger M, Moch JK, Haynes JD, De La Vega P, Holder AA, Batalov S, Carucci DJ, Winzeler EA: Discovery of gene function by expression profiling of the malaria parasite life cycle. Science 2003, 301:1503-1508.
10. Thomas SM, Ndir O, Dieng T, Mboup S, Wypij D, Maguire JH, Wirth DF: In vitro chloroquine susceptibility and PCR analysis of pfcrt and pfmdr1 polymorphisms in Plasmodium falciparum isolates from Senegal. Am J Trop Med Hyg 2002, 66:474-480.
11. Zhou Y, Abagyan R: Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis. BMC Bioinformatics 2002, 3:3.
12. Trager W, Jensen JB: Human malaria parasites in continuous culture. Science 1976, 193:673-675.
13. Lambros C, Vanderberg JP: Synchronization of Plasmodium falciparum erythrocytic stages in culture. J Parasitol 1979, 65:418-420.
14. Snounou G, Zhu X, Siripoon N, Jarra W, Thaithong S, Brown KN, Viriyakosol S: Biased distribution of msp1 and msp2 allelic variants in Plasmodium falciparum populations in Thailand. Trans R Soc Trop Med Hyg 1999, 93:369-374.
15. Kyes S, Pinches R, Newbold C: A simple RNA analysis method shows var and rif multigene family expression patterns in Plasmodium falciparum. Mol Biochem Parasitol 2000, 105:311-315.
16. Hansson GK, Andersson M, Jarl H, Stemme S: Flow cytometric analysis of reticulocytes using an RNA-binding fluorochrome. Scand J Clin Lab Invest 1992, 52:35-41.
17. Zhou Y, Abagyan R: Algorithms for high-density oligonucleotide array. Curr Opin Drug Discov Devel 2003, 6:339-345.
18. Gardner MJ, Tettelin H, Carucci DJ, Cummings LM, Aravind L, Koonin EV, Shallom S, Mason T, Yu K, Fujii C, Pederson J, Shen K, Jing J, Aston C, Lai Z, Schwartz DC, Pertea M, Salzberg S, Zhou L, Sutton GG, Clayton R, White O, Smith HO, Fraser CM, Hoffman SL: Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum. Science 1998, 282:1126-1132.
19. Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, International Human Genome Sequencing Consortium: Initial sequencing and analysis of the human genome. Nature 2001, 409:860-921.
20. Tefferi A, Bolander ME, Ansell SM, Wieben ED, Spelsberg TC: Primer on medical genomics. Part III: Microarray experiments and data analysis. Mayo Clin Proc 2002, 77:927-940.
21. Spielmann T, Fergusen DJ, Beck HP: Etramps, a new Plasmodium falciparum gene family coding for developmentally regulated and highly charged membrane proteins located at the parasite-host cell interface. Mol Biol Cell 2003, 14(4):1529-1544.
22. Blisnick T, Morales Betoulle ME, Barale JC, Uzureau P, Berry L, Desroses S, Fujioka H, Mattei D, Braun Breton C: Pfsbp1, a Maurer's cleft Plasmodium falciparum protein, is associated with the erythrocyte skeleton. Mol Biochem Parasitol 2000, 111(1):107-121.
23. Miller SK, Good RT, Drew DR, Delorenzi M, Sanders PR, Hodder AN, Speed TP, Cowman AF, de Koning-Ward TF, Crabb BS: A subset of Plasmodium falciparum SERA genes are expressed and appear to play an important role in the erythrocytic cycle. J Biol Chem 2002, 277:47524-47532.
24. Abdel-Latif MS, Khattab A, Lindenthal C, Kremsner PG, Klinkert MQ: Recognition of variant Rifin antigens by human antibodies induced during natural Plasmodium falciparum infections. Infect Immun 2002, 70:7013-7021.
25. Aoki S, Li J, Itagaki S, Okech BA, Egwang TG, Matsuoka H, Palacpac NM, Mitamura T, Horii T: Serine repeat antigen (SERA5) is predominantly expressed among the SERA multigene family of Plasmodium falciparum, and the acquired antibody titers correlate with serum inhibition of the parasite growth. J Biol Chem 2002, 277:47533-47540.