-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L. et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25:3389-402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
-
2
-
-
0032726693
-
Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity
-
Blomberg, N., Gabdoulline, R.R. et al. 1999. Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity. Proteins, 37:379-87.
-
(1999)
Proteins
, vol.37
, pp. 379-387
-
-
Blomberg, N.1
Gabdoulline, R.R.2
-
3
-
-
0031302711
-
Functional diversity of PH domains: An exhaustive modelling study
-
Blomberg, N. and Nilges, M. 1997. Functional diversity of PH domains: an exhaustive modelling study. Fold Des., 2:343-55.
-
(1997)
Fold Des
, vol.2
, pp. 343-355
-
-
Blomberg, N.1
Nilges, M.2
-
4
-
-
0031820915
-
Electrotactins: A class of adhesion proteins with conserved electrostatic and structural motifs
-
Botti, S.A., Felder, C.E. et al. 1998. Electrotactins: a class of adhesion proteins with conserved electrostatic and structural motifs. Protein Eng., 11:415-20.
-
(1998)
Protein Eng
, vol.11
, pp. 415-420
-
-
Botti, S.A.1
Felder, C.E.2
-
5
-
-
4143110083
-
Systematic analysis of added-value in simple comparative models of protein structure
-
Chakravarty, S. and Sanchez, R. 2004. Systematic analysis of added-value in simple comparative models of protein structure. Structure, 12:1461-70.
-
(2004)
Structure
, vol.12
, pp. 1461-1470
-
-
Chakravarty, S.1
Sanchez, R.2
-
6
-
-
13744252339
-
Accuracy of structure-derived properties in simple comparative models of protein structures
-
Chakravarty, S., Wang, L. et al. 2005. Accuracy of structure-derived properties in simple comparative models of protein structures. Nucleic Acids Res., 33:244-59.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 244-259
-
-
Chakravarty, S.1
Wang, L.2
-
7
-
-
0032707625
-
-
Chin, K., Sharp, K.A. et al. 1999. Calculating the electrostatic properties of RNA provides new insights into molecular interactions and Nat. Struct Biol., 6:1055-61.
-
Chin, K., Sharp, K.A. et al. 1999. Calculating the electrostatic properties of RNA provides new insights into molecular interactions and Nat. Struct Biol., 6:1055-61.
-
-
-
-
8
-
-
0023936327
-
Using shape complementarity as an initial screen in designing ligands for a receptor binding site of known three-dimensional structure
-
DesJarlais, R.L., Sheridan, R.P. et al. 1988. Using shape complementarity as an initial screen in designing ligands for a receptor binding site of known three-dimensional structure. J. Med. Chem., 31:722-9.
-
(1988)
J. Med. Chem
, vol.31
, pp. 722-729
-
-
DesJarlais, R.L.1
Sheridan, R.P.2
-
9
-
-
0032557490
-
Molecular basis for interactions of G protein betagamma subunits with effectors
-
Ford, C.E., Skiba, N.P. et al. 1998. Molecular basis for interactions of G protein betagamma subunits with effectors. Science, 280:1271-4.
-
(1998)
Science
, vol.280
, pp. 1271-1274
-
-
Ford, C.E.1
Skiba, N.P.2
-
10
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S. and Henikoff, J.G. 1992. Amino acid substitution matrices from protein blocks. Proc. Nad. Acad. Sci., U.S.A., 89:10915-9.
-
(1992)
Proc. Nad. Acad. Sci., U.S.A
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
11
-
-
0029016182
-
Classical electrostatics in biology and chemistry
-
Honig, B. and Nicholls, A. 1995. Classical electrostatics in biology and chemistry. Science, 268:1144-9.
-
(1995)
Science
, vol.268
, pp. 1144-1149
-
-
Honig, B.1
Nicholls, A.2
-
12
-
-
0020491251
-
A geometric approach to macromolecule-ligand interactions
-
Kuntz, I.D., Blaney, J.M. et al. 1982. A geometric approach to macromolecule-ligand interactions. J. Mol. Biol., 161:269-88.
-
(1982)
J. Mol. Biol
, vol.161
, pp. 269-288
-
-
Kuntz, I.D.1
Blaney, J.M.2
-
13
-
-
0029664589
-
The 2.0 A crystal structure of a heterotrimeric G protein
-
Lambright, D.G., Sondek, J. et al. 1996. The 2.0 A crystal structure of a heterotrimeric G protein. Nature (London), 379:311-9.
-
(1996)
Nature (London)
, vol.379
, pp. 311-319
-
-
Lambright, D.G.1
Sondek, J.2
-
14
-
-
0030447531
-
Protein clefts in molecular recognition and function
-
Laskowski, R.A., Luscombe, N.M. et al. 1996. Protein clefts in molecular recognition and function. Protein Sci., 5:2438-52.
-
(1996)
Protein Sci
, vol.5
, pp. 2438-2452
-
-
Laskowski, R.A.1
Luscombe, N.M.2
-
15
-
-
0029664921
-
Evolutionarily conserved Galphabetagamma binding surfaces support a model of the G protein-receptor complex
-
Lichtarge, O., Bourne, H.R. et al. 1996. Evolutionarily conserved Galphabetagamma binding surfaces support a model of the G protein-receptor complex. Proc. Natl. Acad. Sci., U.S.A., 93:7507-11.
-
(1996)
Proc. Natl. Acad. Sci., U.S.A
, vol.93
, pp. 7507-7511
-
-
Lichtarge, O.1
Bourne, H.R.2
-
16
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge, O., Bourne, H.R. et al. 1996. An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol., 257:342-58.
-
(1996)
J. Mol. Biol
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
-
17
-
-
0036468670
-
Evolutionary predictions of binding surfaces and interactions
-
Lichtarge, O. and Sowa, M.E. 2002. Evolutionary predictions of binding surfaces and interactions. Curr. Opin. Struct Biol., 12:21-7.
-
(2002)
Curr. Opin. Struct Biol
, vol.12
, pp. 21-27
-
-
Lichtarge, O.1
Sowa, M.E.2
-
18
-
-
0035720767
-
Evolutionary traces of functional surfaces along G protein signaling pathway
-
Lichtarge, O., Sowa, M.E. et al. 2002. Evolutionary traces of functional surfaces along G protein signaling pathway. Methods Enzymol, 344:536-56.
-
(2002)
Methods Enzymol
, vol.344
, pp. 536-556
-
-
Lichtarge, O.1
Sowa, M.E.2
-
19
-
-
0031555477
-
Identification of functional surfaces of the zinc binding domains of intracellular receptors
-
Lichtarge, O., Yamamoto, K.R. et al. 1997. Identification of functional surfaces of the zinc binding domains of intracellular receptors. J. Mol. Biol., 274:325-37.
-
(1997)
J. Mol. Biol
, vol.274
, pp. 325-337
-
-
Lichtarge, O.1
Yamamoto, K.R.2
-
20
-
-
0242323628
-
Accurate and scalable identification of functional sites by evolutionary tracing
-
Lichtarge, O., Yao, H. et al. 2003. Accurate and scalable identification of functional sites by evolutionary tracing. J. Struct Funct Genomics, 4:159-66.
-
(2003)
J. Struct Funct Genomics
, vol.4
, pp. 159-166
-
-
Lichtarge, O.1
Yao, H.2
-
21
-
-
0009620624
-
A tool for multiple sequence alignment
-
Lipman, D.J., Altschul, S.F. et al. 1989. A tool for multiple sequence alignment. Proc. Natl. Acad. Sci., U.S.A., 86:4412-5.
-
(1989)
Proc. Natl. Acad. Sci., U.S.A
, vol.86
, pp. 4412-4415
-
-
Lipman, D.J.1
Altschul, S.F.2
-
22
-
-
0344837306
-
Conservation of electrostatic properties within enzyme families and superfamilies
-
Livesay, D.R., Jambeck, P. et al. 2003. Conservation of electrostatic properties within enzyme families and superfamilies. Biochemistry, 42:3464-73.
-
(2003)
Biochemistry
, vol.42
, pp. 3464-3473
-
-
Livesay, D.R.1
Jambeck, P.2
-
23
-
-
0036300444
-
Structural clusters of evolutionary trace residues are statistically significant and common in proteins
-
Madabushi, S., Yao, H. et al. 2002. Structural clusters of evolutionary trace residues are statistically significant and common in proteins. J. Mol. Biol., 316:139-54.
-
(2002)
J. Mol. Biol
, vol.316
, pp. 139-154
-
-
Madabushi, S.1
Yao, H.2
-
24
-
-
2442701467
-
The structure of Ski8p, a protein regulating mRNA degradation: Implications for WD protein structure
-
Madrona, A.Y. and Wilson, D.K. 2004. The structure of Ski8p, a protein regulating mRNA degradation: Implications for WD protein structure. Protein Sci., 13:1557-65.
-
(2004)
Protein Sci
, vol.13
, pp. 1557-1565
-
-
Madrona, A.Y.1
Wilson, D.K.2
-
25
-
-
0026671355
-
Structural principles for the propeller assembly of beta-sheets: The preference for seven-fold symmetry
-
Murzin, A.G. 1992. Structural principles for the propeller assembly of beta-sheets: the preference for seven-fold symmetry. Proteins, 14:191-201.
-
(1992)
Proteins
, vol.14
, pp. 191-201
-
-
Murzin, A.G.1
-
26
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A.G., Brenner, S.E. et al. 1995. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247:536-40.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
-
27
-
-
0034993094
-
Protein folds propelled by diversity
-
Paoli, M. 2001. Protein folds propelled by diversity. Prog Biophys. Mol. Biol., 76:103-30.
-
(2001)
Prog Biophys. Mol. Biol
, vol.76
, pp. 103-130
-
-
Paoli, M.1
-
28
-
-
0031001187
-
The Groucho-like transcription factor UNC-37 functions with the neural specificity gene unc-4 to govern motor neuron identity in C. elegans
-
Pflugrad, A., Meir, J.Y. et al. 1997. The Groucho-like transcription factor UNC-37 functions with the neural specificity gene unc-4 to govern motor neuron identity in C. elegans. Development, 124:1699-709.
-
(1997)
Development
, vol.124
, pp. 1699-1709
-
-
Pflugrad, A.1
Meir, J.Y.2
-
29
-
-
0036278145
-
Crystal structure of the C-terminal WD40 repeat domain of the human Groucho/TLE1 transcriptional corepressor
-
Pickles, L.M., Roe, S.M. et al. 2002. Crystal structure of the C-terminal WD40 repeat domain of the human Groucho/TLE1 transcriptional corepressor. Structure, 10:751-61.
-
(2002)
Structure
, vol.10
, pp. 751-761
-
-
Pickles, L.M.1
Roe, S.M.2
-
30
-
-
0035941045
-
Crystal structure of Arp2/3 complex
-
Robinson, R.C., Turbedsky, K. et al. 2001. Crystal structure of Arp2/3 complex. Science, 294:1679-84.
-
(2001)
Science
, vol.294
, pp. 1679-1684
-
-
Robinson, R.C.1
Turbedsky, K.2
-
31
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali, A. and Blundell, T.L. 1993. Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234:779-815.
-
(1993)
J. Mol. Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
32
-
-
0030040967
-
The pleckstrin homology domain: An intriguing multifunctional protein module
-
Shaw, G. 1996. The pleckstrin homology domain: an intriguing multifunctional protein module. Bioessays, 18:35-46.
-
(1996)
Bioessays
, vol.18
, pp. 35-46
-
-
Shaw, G.1
-
33
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov, I.N. and Bourne, P.E. 1998. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11:739-47.
-
(1998)
Protein Eng
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
34
-
-
0033133919
-
The WD repeat: A common architecture for diverse functions
-
Smith, T.F., Gaitatzes, C. et al. 1999. The WD repeat: a common architecture for diverse functions. Trends Biochem. Sci., 24:181-5.
-
(1999)
Trends Biochem. Sci
, vol.24
, pp. 181-185
-
-
Smith, T.F.1
Gaitatzes, C.2
-
35
-
-
23944495919
-
Large-scale modelling as a route to multiple surface comparisons of the CCP module family
-
Soares, D.C., Gerloff, D.L. et al. 2005. Large-scale modelling as a route to multiple surface comparisons of the CCP module family. Protein Eng. Des. Sel., 18:379-88.
-
(2005)
Protein Eng. Des. Sel
, vol.18
, pp. 379-388
-
-
Soares, D.C.1
Gerloff, D.L.2
-
36
-
-
0034660088
-
Structure of the C-terminal domain of Tup1, a corepressor of transcription in yeast
-
Sprague, E.R., Redd, M.J. et al. 2000. Structure of the C-terminal domain of Tup1, a corepressor of transcription in yeast. Embo. J., 19:3016-27.
-
(2000)
Embo. J
, vol.19
, pp. 3016-3027
-
-
Sprague, E.R.1
Redd, M.J.2
-
38
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G. et al. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice: Nucleic Acids Res., 22:4673-80.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
-
39
-
-
0037197254
-
Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature
-
Tsodikov, O.V, Record Jr, M.T. et al. 2002. Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature. J. Comput. Chem., 23:600-9.
-
(2002)
J. Comput. Chem
, vol.23
, pp. 600-609
-
-
Tsodikov, O.V.1
Record Jr, M.T.2
-
41
-
-
0141557547
-
The structure of Aip1p, a WD repeat protein that regulates Cofilin-mediated actin depolymerization
-
Voegtli, W.C., Madrona, A.Y. et al. 2003. The structure of Aip1p, a WD repeat protein that regulates Cofilin-mediated actin depolymerization. J. Biol. Chem., 278:34373-9.
-
(2003)
J. Biol. Chem
, vol.278
, pp. 34373-34379
-
-
Voegtli, W.C.1
Madrona, A.Y.2
-
42
-
-
0037756787
-
Structure of a beta-TrCP1-Skp1-beta-catenin complex: Destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase
-
Wu, G., Xu, G. et al. 2003. Structure of a beta-TrCP1-Skp1-beta-catenin complex: destruction motif binding and lysine specificity of the SCF(beta-TrCP1) ubiquitin ligase. Mol. Cell., 11:1445-56.
-
(2003)
Mol. Cell
, vol.11
, pp. 1445-1456
-
-
Wu, G.1
Xu, G.2
-
43
-
-
0034490962
-
Thirty-plus functional families from a single motif
-
Yu, L., Gaitatzes, C. et al. 2000. Thirty-plus functional families from a single motif. Protein Sci., 9:2470-6.
-
(2000)
Protein Sci
, vol.9
, pp. 2470-2476
-
-
Yu, L.1
Gaitatzes, C.2
|