Protein folds propelled by diversity

Progress in Biophysics and Molecular Biology

Volumn 76, Issue 1-2, 2001, Pages 103-130

  Paoli, Massimo ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Propeller; Sheet; Structural comparison; Structure based sequence alignment

Indexed keywords

AMINE DEHYDROGENASE; BETA PROPELLER PROTEIN; CLATHRIN; COLLAGENASE; GALACTOSE OXIDASE; GELATINASE; GLUCOSE DEHYDROGENASE; HEMOPEXIN; NITRITE REDUCTASE; NITROUS OXIDE REDUCTASE; PHYTASE; PROTEIN; SIALIDASE; TRANSDUCIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; BETA SHEET; CHEMICAL STRUCTURE; CHROMOSOME CONDENSATION; GENETIC PROCEDURES; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NONHUMAN; PHYLOGENY; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; REVIEW; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEINS;

EID: 0034993094     PISSN: 00796107     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0079-6107(01)00007-4     Document Type: Review

References (65)

1. Structure of the Escherichia coli TolB protein determined by MAD methods at 1.95 Å resolution
2. The kelch repeat superfamily of proteins: Propellers of cell functions
3. 1 structure: Unusual haem environments in a nitrite reductase and analysis of factors contributing to β-propeller folds
4. Determinants of a protein fold
5. Tachylectin-2: Crystal structure of a specific GlcNAc/GalNAc-binding lectin involved in the innate immunity host defense of the Japanese horseshoe crab Tachypleus tridentatus
6. The protein data bank: A computer-based archival file for macromolecular structures
7. Drosophila kelch motif is derived from a common enzyme fold
8. The TIM barrel - The most frequently occurring folding motif in proteins
9. A novel type of catalytic copper cluster in nitrous oxide reductase
10. Structural genomics: Beyond the human genome project
11. The structure of TolB, an essential component of the tol-dependent translocation system, and its protein-protein interaction with the translocation domain of colicin E9
12. The CCP4 suite: Programs for protein crystallography
13. Crystal structure of a bacterial sialidase (from Salmonella typhimurium LT2) shows the same fold as an influenza virus neuraminidase
14. Coronin, an actin-binding protein of Dictyostelium discoideum localised to cell surface projections, has sequence similarity to G protein β-subunits
15. 1.8 Å crystal structure of the C-terminal domain of rabbit serum haemopexin
16. Prolyl oligopeptidase: An unusual β-propeller domain regulates proteolysis
17. β Propeller: Structural rigidity and functional diversity
18. 1
19. Folding of proteins with WD-repeats: Comparison of six members of the WD-repeat superfamily to the G protein β subunit
20. Folding a WD repeat propeller. Role of highly conserved aspartic acid residues in the G protein beta subunit and Sec13
21. The refined structure of the quinoprotein methanol dehydrogenase from Methylobacterium extorquens at 1.94 Å
22. The C-terminal (haemopexin-like) domain structure of human gelatinase A (MMP2): Structural implications for its function
23. Transformation in the cyanobacterium synechocystis sp 6803
24. Crystal structure of ribosome anti-association factor IF6
25. Crystal structures of a novel, thermostable phytase in partially and fully calcium-loaded states
26. Atomic structure of clathrin: A β-propeller terminal domain joins an α zigzag linker
27. High-resolution protein design with backbone flexibility
28. De novo design, expression, and characterisation of Felix: A four-helix bundle protein of native-like sequence
29. Crystal structure and mechanism of human L-arginine: Glycine amidino-transferase: A mitochondrial enzyme involved in creatine biosynthesis
30. Novel thioester bond revealed by a 1.7 Å crystal structure of galactose oxidase
31. A deduced Thermomonospora curvata protein containing serine/threonine protein kinase and WD-repeat domains
32. Improved methods for building protein models into electron density maps and the location of errors in these models
33. The warm temperature acclimation-related 65-kDa protein, Wap65, in goldfish and its gene expression
34. MOLSCRIPT: A program to produce both detailed and schematic plots of proteins structures
35. Dissecting α-helices: Position-specific analysis of α-helices in globular proteins
36. The 2.0 Å crystal structure of a heterotrimeric G protein
37. Different protein sequences can give rise to highly similar folds through different stabilising interactions
38. How different amino acid sequences determine similar protein structures: The structure and evolutionary dynamics of the globins
39. Structure of full-length porcine synovial collagenase reveals a C-terminal domain containing a calcium-linked, four-bladed β-propeller
40. JOY: Protein sequence-structure representation and analysis
41. Structural principles for the propeller assembly of β-sheets: The preference for seven-fold symmetry
42. SCOP: A structural classification of proteins database for the investigation of sequences and structures
43. TLP1: A gene encoding a protein component of mammalian telomerase is a novel member of WD repeat family
44. The ancient regulatory-protein family of WD-repeat proteins
45. G protein heterodimers: New structures propel new questions
46. The 1.7 Å crystal structure of the apo form of the soluble quinoprotein glucose dehydrogenase from Acinetobacter calcoaceticus reveals a novel internal conserved sequence repeat
47. Crystal structure of haemopexin reveals a novel high-affinity haem site formed between two β-propeller domains
48. Structure and function of haemoglobin
49. A β-propeller domain within TolB
50. The 1.7 Å crystal structure of the regulator of chromosome condensation (RCC1) reveals a seven-bladed propeller
51. The definition of topological equivalence in homologous and analogous structures: A procedure involving comparison of local properties and structural relationships through dynamic programming and simulated annealing
52. Analysis of the physical properties and molecular modeling of Sec13: A WD repeat protein involved in vesicular traffic
53. The WD repeat: A common architecture for diverse functions
54. Crystal structure of a G protein βγ dimer at 2.1 Å resolution
55. Folding of the N-terminal, ligand-binding region of the integrin α subunits into a β-propeller domain
56. An extracellular β-propeller module predicted in lipoprotein and scavenger receptors, tyrosine kinases, epidermal growth factor precursor, and extracellular matrix components
57. Modification of cys-837 identifies an actin-binding site in the β-propeller protein scruin
58. Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures
59. Molecular cloning of a novel actin-binding protein, p57, with a WD repeat and a leucine zipper motif
60. Structure of the influenza virus glycoprotein antigen neuraminidase at 2.9 Å resolution
61. Structure of quinoprotein methylamine dehydrogenase at 2.25 Å resolution
62. 2
63. The three-dimensional structures of methanol dehydrogenase from two methylotrophic bacteria at 2.6 Å resolution
64. Kelch encodes a component of intercellular bridges in drosophila egg chambers