메뉴 건너뛰기




Volumn 24, Issue 15, 2008, Pages 1722-1728

Ensemble non-negative matrix factorization methods for clustering protein-protein interactions

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN;

EID: 48249087654     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn286     Document Type: Article
Times cited : (83)

References (26)
  • 1
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • Breiman,L. (1996) Bagging predictors. Mach. Learn., 24, 123-140.
    • (1996) Mach. Learn , vol.24 , pp. 123-140
    • Breiman, L.1
  • 2
    • 1642529511 scopus 로고    scopus 로고
    • Metagenes and molecular pattern discovery using matrix factorization
    • Brunet,J.-P. et al. (2004) Metagenes and molecular pattern discovery using matrix factorization. Proc. Nat. Acad. Sci., 101, 4164-4169.
    • (2004) Proc. Nat. Acad. Sci , vol.101 , pp. 4164-4169
    • Brunet, J.-P.1
  • 3
    • 0031858914 scopus 로고    scopus 로고
    • SGD: Saccharomyces Genome Database
    • Cherry,J. et al. (1998) SGD: Saccharomyces Genome Database. Nucleic Acids Res., 26, 73-79.
    • (1998) Nucleic Acids Res , vol.26 , pp. 73-79
    • Cherry, J.1
  • 4
    • 34147121646 scopus 로고    scopus 로고
    • Towards a comprehensive atlas of the physical interactome of saccharomyces cerevisiae
    • Collins,S.R.R. et al. (2007) Towards a comprehensive atlas of the physical interactome of saccharomyces cerevisiae. Mol. Cell. Proteomics.
    • (2007) Mol. Cell. Proteomics
    • Collins, S.R.R.1
  • 7
    • 33644555054 scopus 로고    scopus 로고
    • Proteome survey reveals modularity of the yeast cell machinery
    • Gavin,A.-C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631-636.
    • (2006) Nature , vol.440 , pp. 631-636
    • Gavin, A.-C.1
  • 8
    • 10744227848 scopus 로고    scopus 로고
    • Cluster structure inference based on clustering stability with applications to microarray data analysis
    • Giurcaneanu,C. and Tabus,I. (2004) Cluster structure inference based on clustering stability with applications to microarray data analysis. EURASIP J. Appl. Sign. Process., 1, 64-80.
    • (2004) EURASIP J. Appl. Sign. Process , vol.1 , pp. 64-80
    • Giurcaneanu, C.1    Tabus, I.2
  • 10
    • 34547844077 scopus 로고    scopus 로고
    • Sparse non-negative matrix factorizations via afternating non-negativity-constrained least squares for microarray data analysis
    • Kim,H. and Park,H. (2007). Sparse non-negative matrix factorizations via afternating non-negativity-constrained least squares for microarray data analysis. Bioinformatics, 23, 1495-1502.
    • (2007) Bioinformatics , vol.23 , pp. 1495-1502
    • Kim, H.1    Park, H.2
  • 11
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast saccharomyces cerevisiae
    • Krogan,N.J. et al. (2006) Global landscape of protein complexes in the yeast saccharomyces cerevisiae. Nature, 440, 637-643.
    • (2006) Nature , vol.440 , pp. 637-643
    • Krogan, N.J.1
  • 12
    • 0027211046 scopus 로고
    • Interactions between three common subunits of yeast RNA polymerases i and iii
    • Lalo,D. et al. (1993) Interactions between three common subunits of yeast RNA polymerases i and iii. Proc. Natl Acad. Sci. USA, 90, 5524-5528.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 5524-5528
    • Lalo, D.1
  • 13
    • 0033592606 scopus 로고    scopus 로고
    • Learning the parts of objects by non-negative matrix factorization
    • Lee,D.D. and Seung,H.S. (1999) Learning the parts of objects by non-negative matrix factorization. Nature, 401, 788-791.
    • (1999) Nature , vol.401 , pp. 788-791
    • Lee, D.D.1    Seung, H.S.2
  • 14
    • 9144242935 scopus 로고    scopus 로고
    • MIPS: Analysis and annotation of proteins from whole genomes
    • Database Issue, D41
    • Mewes,H, et al. (2004) MIPS: Analysis and annotation of proteins from whole genomes. Nucleic Acids Res., 32 (Database Issue), D41.
    • (2004) Nucleic Acids Res , vol.32
    • Mewes, H.1
  • 15
    • 0030702085 scopus 로고    scopus 로고
    • The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′-5′ exoribonucleases
    • Mitchell,P. et al. (1997) The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′-5′ exoribonucleases. Cell, 91, 457-466.
    • (1997) Cell , vol.91 , pp. 457-466
    • Mitchell, P.1
  • 16
    • 85156192015 scopus 로고    scopus 로고
    • Generating accurate and diverse members of a neural-network ensemble
    • Opitz,D.W. and Shavlik,J.W. (1996) Generating accurate and diverse members of a neural-network ensemble. Neural Inf. Process. Syst., 8, 535-541.
    • (1996) Neural Inf. Process. Syst , vol.8 , pp. 535-541
    • Opitz, D.W.1    Shavlik, J.W.2
  • 17
    • 34548573170 scopus 로고    scopus 로고
    • Why are there still over 1000 uncharacterized yeast genes?
    • Pena-Castillo,L. and Hughes,T.R. (2007). Why are there still over 1000 uncharacterized yeast genes? Genetics, 176, 7-14.
    • (2007) Genetics , vol.176 , pp. 7-14
    • Pena-Castillo, L.1    Hughes, T.R.2
  • 18
    • 0347755535 scopus 로고    scopus 로고
    • The database of interacting proteins: 2004 update
    • Database issue, D449-D451
    • Salwinski,L. et al. (2004) The database of interacting proteins: 2004 update. Nucleic Acids Res., 32 (Database issue), D449-D451.
    • (2004) Nucleic Acids Res , vol.32
    • Salwinski, L.1
  • 19
    • 0347243182 scopus 로고    scopus 로고
    • Nonlinear component analysis as a kernel eigenvalue problem
    • Schölkopf,B. et al. (1998) Nonlinear component analysis as a kernel eigenvalue problem. Neural Comput., 10, 1299-1319.
    • (1998) Neural Comput , vol.10 , pp. 1299-1319
    • Schölkopf, B.1
  • 20
    • 0029147734 scopus 로고
    • Four subunits that are shared by the three classes of RNA polymerase are functionally interchangeable between homo sapiens and saccharomyces erevisiae
    • Shpakovski,G et al. (1995) Four subunits that are shared by the three classes of RNA polymerase are functionally interchangeable between homo sapiens and saccharomyces erevisiae. Mol. Cell Biol., 15 4702-4710.
    • (1995) Mol. Cell Biol , vol.15 , pp. 4702-4710
    • Shpakovski, G.1
  • 21
    • 0034051227 scopus 로고    scopus 로고
    • Acetylation of histones and transcription-related factors
    • Stemer,D. and Berger, S. (2000)Acetylation of histones and transcription-related factors. Microbiol. Mol. Biol. R., 64, 435.
    • (2000) Microbiol. Mol. Biol. R , vol.64 , pp. 435
    • Stemer, D.1    Berger, S.2
  • 23
    • 0002788820 scopus 로고    scopus 로고
    • Impact of similarity measures on web-page clustering
    • AAAI/MIT Press, pp
    • Strehl,A. et al. (2000) Impact of similarity measures on web-page clustering. In Proceeding of the AAAI Workshop on AI for Web Search AAAI/MIT Press, pp. 58-64.
    • (2000) Proceeding of the AAAI Workshop on AI for Web Search , pp. 58-64
    • Strehl, A.1
  • 24
    • 0037937603 scopus 로고    scopus 로고
    • The nuclear actin-related proteins arp7 and arp9: A dimeric module that cooperates with architectural proteins for chromatin remodeling
    • Szerlong,H. et al. (2003) The nuclear actin-related proteins arp7 and arp9: A dimeric module that cooperates with architectural proteins for chromatin remodeling. EMBO J., 22, 3175-3187.
    • (2003) EMBO J , vol.22 , pp. 3175-3187
    • Szerlong, H.1
  • 25
    • 14844325783 scopus 로고    scopus 로고
    • From protein networks to biological systems
    • Uetz, P. and Finley, R. (2005). From protein networks to biological systems. FEBS Lett., 579, 1821-1827.
    • (2005) FEBS Lett , vol.579 , pp. 1821-1827
    • Uetz, P.1    Finley, R.2
  • 26
    • 48249147966 scopus 로고    scopus 로고
    • Uetz,P. et al. (2002) Visualization and integration of protein-protein interactions. In Protein-Protein Interactions-a Molecular Cloning Manual.
    • Uetz,P. et al. (2002) Visualization and integration of protein-protein interactions. In Protein-Protein Interactions-a Molecular Cloning Manual.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.