-
1
-
-
0038349624
-
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
-
DOI 10.1101/gr.1017303
-
Zavolan, M., Kondo, S., Schonbach, C., Adachi, J., Hume, D., Hayashizaki, Y., et al., 2003, Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome, Genome Res., 13, 1290-1300. (Pubitemid 36827224)
-
(2003)
Genome Research
, vol.13
, Issue.6
, pp. 1290-1300
-
-
Zavolan, M.1
Kondo, S.2
Schonbach, C.3
Adachi, J.4
Hume, D.A.5
Arakawa, T.6
Carninci, P.7
Kawai, J.8
Hayashizaki, Y.9
Gaasterland, T.10
-
2
-
-
2442694425
-
Transcriptome and genome conservation of alternative splicing events in humans and mice
-
Sugnet, C., Kent, W., Ares, M. and Haussler, D. 2004, Transcriptome and genome conservation of alternative splicing events in humans and mice, Pac. Symp. Biocomput., 66-77.
-
(2004)
Pac. Symp. Biocomput.
, pp. 66-77
-
-
Sugnet, C.1
Kent, W.2
Ares, M.3
Haussler, D.4
-
3
-
-
0028895417
-
Exon recognition in vertebrate splicing
-
Berget, S. 1995, Exon recognition in vertebrate splicing, J. Biol. Chem., 270, 2411-2414.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 2411-2414
-
-
Berget, S.1
-
4
-
-
0034533608
-
An alternative-exon database and its statistical analysis
-
DOI 10.1089/104454900750058107
-
Stamm, S., Zhu, J., Nakai, K., Stoilov, P., Stoss, O. and Zhang, M. 2000, An alternative-exon database and its statistical analysis, DNA Cell Biol., 19, 739-756. (Pubitemid 32011938)
-
(2000)
DNA and Cell Biology
, vol.19
, Issue.12
, pp. 739-756
-
-
Stamm, S.1
Zhu, J.2
Nakai, K.3
Stoilov, P.4
Stoss, O.5
Zhang, M.Q.6
-
5
-
-
24944433166
-
Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes
-
DOI 10.1093/nar/gki810
-
Wang, J., Smith, P., Krainer, A. and Zhang, M. 2005, Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes, Nucleic Acids Res., 33, 5053-5062. (Pubitemid 41487813)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.16
, pp. 5053-5062
-
-
Wang, J.1
Smith, P.J.2
Krainer, A.R.3
Zhang, M.Q.4
-
6
-
-
0038486897
-
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
-
DOI 10.1101/gr.1208803
-
Sorek, R. and Ast, G. 2003, Intronic sequences flanking alternatively spliced exons are conserved between human and mouse, Genome Res., 13, 1631-1637. (Pubitemid 36874480)
-
(2003)
Genome Research
, vol.13
, Issue.7
, pp. 1631-1637
-
-
Sorek, R.1
Ast, G.2
-
7
-
-
24644493193
-
Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing
-
DOI 10.1073/pnas.0506139102
-
Baek, D. and Green, P. 2005, Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing, Proc. Natl Acad. Sci. USA, 102, 12813-12818. (Pubitemid 41279448)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.36
, pp. 12813-12818
-
-
Baek, D.1
Green, P.2
-
8
-
-
33747357799
-
Differentiated evolutionary rates in alternative exons and the implications for splicing regulation
-
Plass, M. and Eyras, E. 2006, Differentiated evolutionary rates in alternative exons and the implications for splicing regulation, BMC Evol. Biol., 6, 50.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 50
-
-
Plass, M.1
Eyras, E.2
-
9
-
-
19344363974
-
Promoter usage and alternative splicing
-
DOI 10.1016/j.ceb.2005.04.014, PII S0955067405000566, Nucleus and Gene Expression
-
Kornblihtt, A. 2005, Promoter usage and alternative splicing, Curr. Opin. Cell. Biol., 17, 262-268. (Pubitemid 40719915)
-
(2005)
Current Opinion in Cell Biology
, vol.17
, Issue.3
, pp. 262-268
-
-
Kornblihtt, A.R.1
-
10
-
-
30044440197
-
Chromatin, transcript elongation and alternative splicing
-
DOI 10.1038/nsmb0106-5
-
Kornblihtt, A. 2006, Chromatin, transcript elongation and alternative splicing, Nat. Struct. Mol. Biol., 13, 5-7. (Pubitemid 43049394)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.1
, pp. 5-7
-
-
Kornblihtt, A.R.1
-
11
-
-
0037044769
-
Transcriptional activators differ in their abilities to control alternative splicing
-
DOI 10.1074/jbc.M208418200
-
Nogues, G., Kadener, S., Cramer, P., Bentley, D. and Kornblihtt, A. 2002, Transcriptional activators differ in their abilities to control alternative splicing, J. Biol. Chem., 277, 43110-43114. (Pubitemid 35285694)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.45
, pp. 43110-43114
-
-
Nogues, G.1
Kadener, S.2
Cramer, P.3
Bentley, D.4
Kornblihtt, A.R.5
-
12
-
-
0031806710
-
Alternative splicing of the fibronectin EIIIB exon depends on specific TGCATG repeats
-
Lim, L. and Sharp, P. 1998, Alternative splicing of the fibronectin EIIIB exon depends on specific TGCATG repeats, Mol. Cell. Biol., 18, 3900-3906. (Pubitemid 28287913)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.7
, pp. 3900-3906
-
-
Lim, L.P.1
Sharp, P.A.2
-
13
-
-
0033638283
-
Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC - 1
-
Monsalve, M., Wu, Z., Adelmant, G., Puigserver, P., Fan, M. and Spiegelman, B. 2000, Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC - 1, Mol. Cell, 6, 307-316.
-
(2000)
Mol. Cell
, vol.6
, pp. 307-316
-
-
Monsalve, M.1
Wu, Z.2
Adelmant, G.3
Puigserver, P.4
Fan, M.5
Spiegelman, B.6
-
14
-
-
0037449704
-
Promoter architecture modulates CFTR exon 9 skipping
-
DOI 10.1074/jbc.M209676200
-
Pagani, F., Stuani, C., Zuccato, E., Kornblihtt, A. and Baralle, F. 2003, Promoter architecture modulates CFTR exon 9 skipping, J. Biol. Chem., 278, 1511-1517. (Pubitemid 36801378)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.3
, pp. 1511-1517
-
-
Pagani, F.1
Stuani, C.2
Zuccato, E.3
Kornblihtt, A.R.4
Baralle, F.E.5
-
15
-
-
0037064150
-
Coordinate regulation of transcription and splicing by steroid receptor coregulators
-
DOI 10.1126/science.1073734
-
Auboeuf, D., Honig, A., Berget, S. and O'Malley, B. 2002, Coordinate regulation of transcription and splicing by steroid receptor coregulators, Science, 298, 416-419. (Pubitemid 35176350)
-
(2002)
Science
, vol.298
, Issue.5592
, pp. 416-419
-
-
Auboeuf, D.1
Honig, A.2
Berget, S.M.3
O'Malley, B.W.4
-
16
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M., Maeda, N. et al. 2005, The transcriptional landscape of the mammalian genome, Science, 309, 1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.5
Maeda, N.6
-
17
-
-
4344623260
-
Integrative annotation of 21,037 human genes validated by fulllength cDNA clones
-
Imanishi, T., Itoh, T., Suzuki, Y., O'Donovan, C., Fukuchi, S., Koyanagi, K. et al. 2004, Integrative annotation of 21,037 human genes validated by fulllength cDNA clones, PLoS Biol., 2, 856-875.
-
(2004)
PLoS Biol.
, vol.2
, pp. 856-875
-
-
Imanishi, T.1
Itoh, T.2
Suzuki, Y.3
O'Donovan, C.4
Fukuchi, S.5
Koyanagi, K.6
-
18
-
-
33646491292
-
A simple physical model predicts small exon length variations
-
Chern, T., van Nimwegen, E., Kai, C., Kawai, J., Carninci, P., Hayashizaki, Y. et al. 2006, A simple physical model predicts small exon length variations, PLoS Genet., 2, e45.
-
(2006)
PLoS Genet.
, vol.2
-
-
Chern, T.1
Van Nimwegen, E.2
Kai, C.3
Kawai, J.4
Carninci, P.5
Hayashizaki, Y.6
-
19
-
-
33646493012
-
SPA: A probabilistic algorithm for spliced alignment
-
van Nimwegen, E., Paul, N., Sheridan, R. and Zavolan, M. 2006, SPA: A probabilistic algorithm for spliced alignment, PLoS Genet., 2, e24.
-
(2006)
PLoS Genet.
, vol.2
-
-
Van Nimwegen, E.1
Paul, N.2
Sheridan, R.3
Zavolan, M.4
-
20
-
-
0036737683
-
Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome
-
Zavolan, M., van Nimwegen, E. and Gaasterland, T. 2002, Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome, Genome Res., 12, 1377-1385.
-
(2002)
Genome Res.
, vol.12
, pp. 1377-1385
-
-
Zavolan, M.1
Van Nimwegen, E.2
Gaasterland, T.3
-
21
-
-
33744805985
-
Genome-wide analysis of mammalian promoter architecture and evolution
-
DOI 10.1038/ng1789, PII N1789
-
Carninci, P., Sandelin, A., Lenhard, B., Katayama, S., Shimokawa, K., Ponjavic, J. et al. 2006, Genome-wide analysis of mammalian promoter architecture and evolution, Nat. Genet., 38, 626-635. (Pubitemid 43927303)
-
(2006)
Nature Genetics
, vol.38
, Issue.6
, pp. 626-635
-
-
Carninci, P.1
Sandelin, A.2
Lenhard, B.3
Katayama, S.4
Shimokawa, K.5
Ponjavic, J.6
Semple, C.A.M.7
Taylor, M.S.8
Engstrom, P.G.9
Frith, M.C.10
Forrest, A.R.R.11
Alkema, W.B.12
Tan, S.L.13
Plessy, C.14
Kodzius, R.15
Ravasi, T.16
Kasukawa, T.17
Fukuda, S.18
Kanamori-Katayama, M.19
Kitazume, Y.20
Kawaji, H.21
Kai, C.22
Nakamura, M.23
Konno, H.24
Nakano, K.25
Mottagui-Tabar, S.26
Arner, P.27
Chesi, A.28
Gustincich, S.29
Persichetti, F.30
Suzuki, H.31
Grimmond, S.M.32
Wells, C.A.33
Orlando, V.34
Wahlestedt, C.35
Liu, E.T.36
Harbers, M.37
Kawai, J.38
Bajic, V.B.39
Hume, D.A.40
Hayashizaki, Y.41
more..
-
22
-
-
84988044467
-
CAGE: Cap analysis of gene expression
-
Kodzius, R., Kojima, M., Nishiyori, H., Nakamura, M., Fukuda, S., Tagami, M. et al. 2006, CAGE: Cap analysis of gene expression, Nat. Methods., 3, 211-222.
-
(2006)
Nat. Methods.
, vol.3
, pp. 211-222
-
-
Kodzius, R.1
Kojima, M.2
Nishiyori, H.3
Nakamura, M.4
Fukuda, S.5
Tagami, M.6
-
23
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
DOI 10.1038/ng1159
-
Modrek, B. and Lee, C. 2003, Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss, Nat. Genet., 34, 177-180. (Pubitemid 36666928)
-
(2003)
Nature Genetics
, vol.34
, Issue.2
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
24
-
-
0023651307
-
RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression
-
Shapiro, M. and Senapathy, P. 1987, RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression, Nucletic. Acids Res., 15, 7155-7174.
-
(1987)
Nucletic. Acids Res.
, vol.15
, pp. 7155-7174
-
-
Shapiro, M.1
Senapathy, P.2
-
25
-
-
0028924386
-
Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation
-
Krumm, A., Hickey, L. and Groudine, M. 1995, Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation, Genes Dev., 9, 559-572.
-
(1995)
Genes Dev.
, vol.9
, pp. 559-572
-
-
Krumm, A.1
Hickey, L.2
Groudine, M.3
-
26
-
-
30044441988
-
The human SWI/SNF subunit Brm is a regulator of alternative splicing
-
DOI 10.1038/nsmb1030
-
Batsche, E., Yavin, M. and Muchardt, C. 2006, The human SWI/SNF subunit Brm is a regulator of alternative splicing, Nat. Struct. Mol. Biol., 13, 22-29. (Pubitemid 43049398)
-
(2006)
Nature Structural and Molecular Biology
, vol.13
, Issue.1
, pp. 22-29
-
-
Batsche, E.1
Yaniv, M.2
Muchardt, C.3
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