Development of a sensitive and quantitative assay for spring viremia of carp virus based on real-time RT-PCR

Journal of Virological Methods

Volumn 152, Issue 1-2, 2008, Pages 43-48

  Yue, Zhiqin ^a   Teng, Yong ^b,d   Liang, Chengzhu ^a   Xie, Xiayang ^d   Xu, Biao ^a   Zhu, Laihua ^a   Lei, Zhiwen ^a   He, Junqiang ^c   Liu, Zongxiao ^c   Jiang, Yulin ^c   Liu, Hong ^c   Qin, Qiwei ^b  

^a Shandong Entry Exit Inspection and Quarantine Bureau   (China)

^b SUN YAT SEN UNIVERSITY   (China)

^c Shenzhen Exit and Entry Inspection and Quarantine Bureau   (China)

^d MEDICAL COLLEGE OF GEORGIA   (United States)

Author keywords

Diagnostic assay; Real time RT PCR; SVCV; TaqMan probe

Indexed keywords

VIRUS RNA;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BACTERIOPHAGE T7; CARP; CONTROLLED STUDY; CROSS REACTION; INFECTIOUS PANCREATIC NECROSIS VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPRING VIREMIA OF CARP VIRUS; VESICULAR STOMATITIS VIRUS; VIRAL HEMORRHAGIC SEPTICEMIA VIRUS;

ANIMALS; CARPS; CELL LINE; FISH DISEASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RHABDOVIRIDAE; SENSITIVITY AND SPECIFICITY; VIREMIA;

CYPRINUS CARPIO; EPIZOOTIC HAEMATOPOIETIC NECROSIS VIRUS; GRASS CARP REOVIRUS; INFECTIOUS PANCREATIC NECROSIS VIRUS; SPRING VIREMIA OF CARP VIRUS; VIRAL HEMORRHAGIC SEPTICEMIA VIRUS;

EID: 47949111499     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2008.05.031     Document Type: Article

References (38)

1. Ahne W. Uptake and multiplication of spring viremia of carp virus in carp cyprinus carpio L. J. Fish Dis. 1 (1978) 265-268
2. Ahne W. Serological techniques currently used in fish virology. Dev. Biol. Stand. 49 (1981) 3-27
3. Ahne W., Bjorklund H.V., Essbauer S., Fijan N., Kurath G., and Winton J.R. Spring viremia of carp (SVC). Dis. Aquat. Org. 52 (2002) 261-272
4. Bjorklund H.V., Higman K.H., and Kurath G. The glycoprotein genes and gene junctions of the fish rhabdoviruses Spring viremia of carp virus and hirame rhabdovirus: analysis of relationship with other rhabdoviruses. Virus Res. 42 (1996) 65-80
5. Caelers A., Berishvili G., Meli M.L., Eppler E., and Reinecke M. Establishment of a real-time RT-PCR for the determination of absolute amounts of IGF-I and IGF-II gene expression in liver and extrahepatic sites of the tilapia. Gen. Comp. Endocrinol. 137 (2004) 196-204
6. Chico V., Gomez N., Estepa A., and Perez L. Rapid detection and quantitation of viral hemorrhagic septicemia virus in experimentally challenged rainbow trout by real-time RT-PCR. J. Virol. Methods 132 (2006) 154-159
7. Dalla V.L., Toffolo V., Lamprecht M., Maltese C., Bovo G., Belvedere P., and Colombo L. Development of a sensitive and quantitative diagnostic assay for fish nervous necrosis virus based on two-target real-time PCR. Vet. Microbiol. 31 (2005) 167-179
8. Dikkeboom A., Radi C., Toohey-Kurth K., Marcquenski S., Engel M., Goodwin A.E., Way K., Stone D.M., and Longshaw C. First report of spring viremia of carp virus (SVCV) in wild common carp in North America. J. Aquat. Anim. Health 16 (2004) 169-178
9. Dixon P.F., and Longshaw C.B. Assessment of commercial test kits for identification of spring viraemia of carp virus. Dis. Aquat. Org. 67 (2005) 25-29
10. Faisal M., and Ahne W. Spring viremia of carp virus (SVCV): comparison of immunoperoxidase, fluorescent antibody and cell culture isolation techniques for detection of antigen. J. Fish Dis. 7 (1984) 57-64
11. Fijan N., Petrinec Z., Sulimanovic D., and Zwillenberg L.O. Isolation of the viral causative agent from the acute form of infectious dropsy of carp. Vet. Arhiv. 41 (1971) 125-138
12. Fronhoffs S., Totzke G., Stier S., Wernert N., Rothe M., Brüning T., Koch B., Sachinidis A., Vetter H., and Ko Y. A method for the rapid construction of cRNA standard curves in quantitative real time reverse transcription polymerase chain reaction. Mol. Cell. Probes 16 (2002) 99-110
13. Gilad O., Yun S., Zagmutt-Vergara F.J., Leutenegger C.M., Bercovier H., and Hedrick R.P. Concentrations of Koi herpesvirus (KHV) in tissues of experimentally infected Cyprinus carpio koi as assessed by real-time TaqMan PCR. Dis. Aquat. Org. 60 (2004) 179-187
14. Goodwin A. First report of spring viremia or carp virus (SVCV) in North America. J. Aquat. Anim. Health 14 (2002) 161-164
15. Heid C.A., Stevens J., Livak K.J., and Williams P.M. Real time quantitative PCR. Genome Res. 6 (1996) 986-994
16. Hoffmann B., Schutze H., and Mettenleiter T.C. Determination of the complete genomic sequence and analysis of the gene products of the virus of Spring Viremia of Carp, a fish rhabdovirus. Virus Res. 84 (2002) 89-100
17. Holland P.M., Abramson R.D., Watson R., and Gelfand D.H. Detection of specific polymerase chain reaction product by utilizing the 5′ → 3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc. Natl. Acad. Sci. U.S.A. 88 (1991) 7276-7280
18. Jørgensen P.E.V., Olesen N.J., Ahne W., and Lorenzen N. SVCV and PFR viruses: serological examination of 22 isolates indicates close relationship between the two fish rhabdoviruses. In: Ahne W., and Kurstak E. (Eds). Viruses of Lower Vertebrates (1989), Springer-Verlag, Berlin 349-366
19. Krieg P. Improved synthesis of full length RNA probe at reduced incubation temperatures. Nucleic Acids Res. 18 (1991) 6463
20. Kong Y.Y., Thay C.H., Tin T.C., and Devi S. Rapid detection, serotyping and quantitation of dengue viruses by TaqMan real-time one-step RT-PCR. J. Virol. Methods 138 (2006) 123-130
21. Liu H., Gao L., Shi X., Gu T., Jiang Y., and Chen H. Isolation of spring viremia of carp virus (SVCV) from cultured koi (Cyprinus carpio koi) and common carp (C. carpio carpio) in PR China. Bull. Eur. Assoc. Fish Pathol. 24 (2004) 194-202
22. Liu H., Fu F., Huang J., He J.Q., Shi X.J., Gao L.Y., Yang J.S., and Jiang Y.L. Amino acid sequence of a Chinese isolate of spring viraemai virus of carp and preliminary analysis of the glycoprotein gene. Virol. Sinica 20 (2005) 647-651
23. Munir K., and Kibenge F.S. Detection of infectious salmon anaemia virus by real-time RT-PCR. J. Virol. Methods 117 (2004) 37-47
24. Office International des Epizooties (OIE). Diagnostic Manual for Aquatic Animal Diseases (2003), Office International des Epizooties, Paris
25. Oreshkova S.F., Tikunova N.V., Shchelkunov I.S., and Ilyichev A.A. Detection of spring viremia of carp virus by hybridization with biotinylated DNA probes. Vet. Res. 26 (1995) 533-535
26. Oreshkova S.F., Shchelkunov I.S., Tikunova N.V., Shchelkunova T.I., Puzyrev A.T., and Ilyichev A.A. Detection of spring viremia of carp virus isolates by hybridization with non-radioactive probes and amplification by polymerase chain reaction. Virus Res. 63 (1999) 3-10
27. Osman F., Leutenegger C., Golino D., and Rowhani A. Real-time RT-PCR (TaqMan) assays for the detection of Grapevine Leafroll associated viruses 1-5 and 9. J. Virol. Methods 141 (2007) 22-29
28. Overturf K., and LaPatra S. Quantitative expression (Walbaum) of immunological factors in rainbow trout, Oncorhynchus mykiss (Walbaum), after infection with either Flavobacterium psychrophilum, Aeromonas salmonicida, or infectious haematopoietic necrosis virus. J. Fish Dis. 292 (2006) 15-24
29. Purcell M.K., Kurath G., Garver K.A., Herwig R.P., and Winton J.R. Quantitative expression profiling of immune response genes in rainbow trout following infectious haematopoietic necrosis virus (IHNV) infection or DNA vaccination. Fish Shellfish Immunol. 17 (2004) 447-462
30. Rodak L., Pospisil Z., Tomanek J., Vesely T., Obr T., and Valicek L. Enzyme-linked immunosorbent assay (ELISA) for the detection of spring viremia of carp virus (SVCV) in tissue homogenates of the carp, Cyprinus carpio. J. Fish Dis. 16 (1993) 101-111
31. Rowley H., Graham D.A., Campbell S., Way K., Stone D.M., Curran W.L., and Bryson D.G. Isolation and characterisation of rhabdovirus from wild common bream Abramis brama, roach Rutilus rutilus, farmed brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss in Northern Ireland. Dis. Aquat. Org. 48 (2001) 7-15
32. Roy P., and Clewley J.P. In: Mahy B.W.J., and Barry R.D. (Eds). Negative Strand Viruses and Host Cells (1978), Academic Press, New York 117-125
33. Roy P., Gupta K.C., and Kiuchi A. Characterization of spring viremia of carp virus mRNA species and the 3′ sequence of the viral RNA. Virus Res. 1 (1984) 189-202
34. Snow M., McKay P., McBeath A.J., Black J., Doig F., Kerr R., Cunningham C.O., Nylund A., and Devold M. Development, application and validation of a Taqman real-time RT-PCR assay for the detection of infectious salmon anaemia virus (ISAV) in Atlantic salmon (Salmo salar). Dev. Biol. 126 (2006) 133-215
35. Stone D.M., Ahne W., Denham K.L., Dixon P.F., Liu C.T.Y., Sheppard A.M., Taylor G.R., and Way K. Nucleotide sequences analysis of the glycoprotein pike fry rhabdovirus isolates reveals four genogroups. Dis. Aquat. Org. 53 (2003) 203-210
36. Teng Y., Liu H., Lv J.Q., Fan W.H., Zhang Q.Y., and Qin Q.W. Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China. Arc. Virol. 152 (2007) 1457-1465
37. Way K. Rapid detection of SVC virus antigen in infected cell cultures and clinically diseased carp by enzyme-linked immunosorbent assay (ELISA). J. Appl. Ichthyol. 7 (1991) 95-107
38. Wolf K.M. Fish viruses and fish viral diseases (1988), Cornell University Press, New York