Rapid detection, serotyping and quantitation of dengue viruses by TaqMan real-time one-step RT-PCR

Journal of Virological Methods

Volumn 138, Issue 1-2, 2006, Pages 123-130

  Kong, Yong Yean ^a   Thay, Chong Heng ^a   Tin, Tan Chong ^a   Devi, Shamala ^a  

^a UNIVERSITY OF MALAYA   (Malaysia)

Author keywords

Dengue virus; One step real time RT PCR; Quantitation; TaqMan

Indexed keywords

IMMUNOGLOBULIN M ANTIBODY; VIRUS RNA;

ARTICLE; BLOOD SAMPLING; CHLAMYDIA; CONTROLLED STUDY; CYTOMEGALOVIRUS; DENGUE VIRUS; DIAGNOSTIC ACCURACY; HERPES SIMPLEX VIRUS; JAPANESE ENCEPHALITIS VIRUS; LEGIONELLA; LEPTOSPIRA; MEASLES VIRUS; MOLECULAR PROBE; MUMPS VIRUS; MYCOPLASMA; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; QUANTITATIVE ASSAY; REAL TIME POLYMERASE CHAIN REACTION; RUBELLA VIRUS; SERODIAGNOSIS; SEROTYPING; TISSUE CULTURE; VARICELLA ZOSTER VIRUS; VIRUS CULTURE; VIRUS DETECTION; VIRUS GENE; VIRUS ISOLATION; WEST NILE FLAVIVIRUS;

BASE SEQUENCE; DENGUE; DENGUE VIRUS; HUMANS; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE PROBES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SEROTYPING; VIRAL NONSTRUCTURAL PROTEINS;

CHLAMYDIA; CYTOMEGALOVIRUS; DENGUE VIRUS; DENGUE VIRUS GROUP; HUMAN HERPESVIRUS 3; JAPANESE ENCEPHALITIS VIRUS; LEGIONELLA; LEPTOSPIRA; MEASLES VIRUS; MUMPS VIRUS; MYCOPLASMA; RUBELLA VIRUS; SALMONELLA TYPHI; SIMPLEXVIRUS; WEST NILE VIRUS;

EID: 33750375079     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2006.08.003     Document Type: Article

References (30)

1. Bravo J.R., Guzman M.G., and Kouri G.P. Why dengue hemorrhagic fever in Cuba? Part I. Individual risk factor dengue hemorrhagic fever/dengue shock syndrome (DHF/DSS). Trans. R. Soc. Trop. Med. Hyg. 81 (1978) 816-820
2. Burke D.S., Nisalak A., Johanson D.E., and Scott R.M. A prospective study of dengue virus infection in Bangkok. Am. J. Trop. Med. Hyg. 38 (1988) 172-180
3. Callahan J.D., Wu S.J., Dion-Schulrz A., Mangold B.E., Peruski L.F., Watts D.M., Porter K.R., Murphy G.R., Suharyono W., King C.C., Hayes C.G., and Temenak J.J. Development and evaluation of serotype and group-specific fluorogenic reverse transcriptase PCR (TaqMan) assay for dengue virus. J. Clin. Microbiol. 39 (2001) 4119-4124
4. Chambers T.J., Hahn C.S., Galler R., and Rice C.M. Flavivirus genome organization, expression, and replication. Annu. Rev. Microbiol. 44 (1990) 649-688
5. Chang G.J.J., Trent D.W., Vorndam A.V., Vergne E., Kinney R.M., and Mitchell C.J. An integrated target sequence and signal amplification assay, reverse transcriptase-PCR-enzyme-linked immunosorbent assay, to detect and characterize flaviviruses. J. Clin. Microbiol. 32 (1994) 477-483
6. Chow V.T. Molecular diagnosis and epidemiology of dengue virus infection. Ann. Acad. Med. Singapore 26 (1997) 820-826
7. Clarke D.H., and Cassals J. Techniques for haemagglutination and haemagglutination-inhibition with arthropod-borne viruses. Am. J. Trop. Med. Hyg. 7 (1958) 561
8. Deubel V., Kinney R.M., and Trent D.W. Nucleotide sequence and deduced amino acid sequence of the nonstructural proteins of dengue type 2 virus, Jamaica genotype: comparative analysis of the full-length genome. Virology 165 (1988) 234-244
9. Endy T.P., Chunsuttiwat S., Nisalak A., Libraty D.H., Green S., Rothman A.L., Vaughn D.W., and Ennis F.A. Epidemiology of inapparent and symptomatic acute dengue virus infection: a prospective study of primary school children in Kamphaeng Phet, Thailand. Am. J. Epidemiol. 156 (2002) 40-51
10. Gibbons R.V., and Vaughn D.W. Dengue: an escalating problem. BMJ 324 (2002) 1563-1566
11. Gubler D.J. Dengue and dengue hemorrhagic fever: its history and resurgence as a global public health problem. In: Gubler D.J., and Kuno G. (Eds). Dengue and Dengue Hemorrhagic Fever (1997), CAB International, New York, NY 1-22
12. Gubler D.J. Dengue and dengue hemorrhagic fever. Clin. Microbiol. Rev. 11 (1998) 480-496
13. Guzman M.G., Kouri G., Bravo J., Soler M., Vazquez S., and Morier L. Dengue hemorrhagic fever in Cuba, 1981: a retrospective seroepidemiologic study. Am. J. Trop. Med. Hyg. 42 (1990) 179-184
14. Halstead S.B. Pathogenesis of dengue: challenges to molecular biology. Science 239 (1988) 476-481
15. Halstead S.B., and O'Rourke E.J. Dengue viruses and mononuclear phagocytes. Part II. Identity of blood and tissue leukocytes supporting in vitro infection. J. Exp. Med. 146 (1977) 218-229
16. Halstead S.B., Shotwell H., and Casals J. Studies on the pathogenesis of dengue virus in monkey. Part II. Clinical laboratory responses to heterologous infection. J. Infect. Dis. 128 (1973) 15-22
17. Heid C.A., Stevens J., Livak K.J., and Williams P.M. Real time quantitative PCR. Genome Res. 6 (1996) 986-994
18. Holland P.M., Abramson R.D., Watson R., and Gelfand D.H. Detection of specific polymerase chain reaction product by utilizing the 5′ → 3′ exonuclease activity of Thermus aquaticus DNA polymerase. Proc. Natl. Acad. Sci. U.S.A. 88 (1991) 7276-7280
19. Innis B.L. Dengue and dengue hemorrhagic fever. In: Porterfield J.S. (Ed). Exotic Viral Infections-1995 (1995), Chapman & Hall, London, United Kingdom 103-146
20. Johnson B.K.A., and Vorma M.G. Infection of an Aedes aegypti cell line with infectious arbovirus-antibody complexes. Trans. R. Soc. Trop. Med. Hyg. 70 3 (1976) 230-234
21. Johnson B.W., Russell B.J., and Lanciotti R.S. Serotype-specific detection of dengue viruses in a Fourplex real-time reverse transcriptase PCR assay. J. Clin. Microbiol. 43 (2005) 4977-4983
22. Krieg P. Improved synthesis of full length RNA probe at reduced incubation temperatures. Nucl. Acids Res. 18 (1991) 6463
23. Lam S.K., Devi S., and Pang T. Detection of specific IgM in dengue infections. Southe. Asian J. Trop Med. Public Health 18 4 (1987) 532-538
24. Lanciotti R.S., Calisher C.H., Gubler D.J., Chang G.J., and Vorndam A.V. Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction. J. Clin. Microbiol. 30 (1992) 545-551
25. Laue T., Emmerich P., and Schmitz H. Detection of dengue virus RNA in patient after primary or secondary dengue infection using the TaqMan automated amplification system. JCM (1999) 2447-2543
26. Lei H.Y., Yeh T.M., Liu H.S., Lin Y.S., Chen S.H., and Liu C.C. Immunopathogenesis of dengue virus infection. J. Biomed. Sci. 8 (2001) 377-388
27. Leyssen P., Clereq E.D., and Neyts J. Prospectives for the treatment of infectious with Flaviviridea. Clin. Microbiol. Rev. 13 (2000) 67-82
28. Nimmannitya S. Clinical spectrum and management of dengue hemorrhagic fever. Southe. Asia J. Trop. Med. Public Health 18 (1987) 392-397
29. Rice C.M., Lenches E.M., Eddy S.R., Shin S.J., Sheets R.L., and Strauss J.H. Nucleotide sequence of yellow fever virus. Implication for flavivirus expression and evolution. Science 299 (1985) 726-733
30. World Health Organization. Dengue Hemorrhagic Fever: Diagnosis, Treatment, Prevention and Control. 2nd ed. (1997), World Health Organization, Geneva, Switzerland