The glycoprotein genes and gene junctions of the fish rhabdoviruses spring viremia of carp virus and hirame rhabdovirus: Analysis of relationships with other rhabdoviruses

Virus Research

Volumn 42, Issue 1-2, 1996, Pages 65-80

  Björklund, Harry V ^a,b   Higman, Keith H ^a   Kurath, Gael ^a  

^a National Biological Service   (United States)

^b ÅBO AKADEMI UNIVERSITY   (Finland)

Author keywords

Gene junctions; Glycoprotein gene; Hirame rhabdovirus; Phylogeny; Rhabdoviridae; Spring viremia of carp virus

Indexed keywords

GLYCOPROTEIN;

AMINO ACID SEQUENCE; ARTICLE; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; RHABDOVIRUS; SEQUENCE ANALYSIS; TRANSCRIPTION INITIATION; VESICULAR STOMATITIS VIRUS; VIREMIA;

CHANDIPURA VIRUS; CHIPMUNK PARVOVIRUS; CYPRINUS CARPIO; HIRAME RHABDOVIRUS; INFECTIOUS HEMATOPOIETIC NECROSIS VIRUS; MAMMALIA; PARALICHTHYS OLIVACEUS; RABIES VIRUS; RHABDOVIRIDAE; SPRING VIREMIA OF CARP VIRUS; VESICULAR STOMATITIS NEW JERSEY VIRUS; VESICULAR STOMATITIS VIRUS; VESICULAR STOMATITIS-INDIANA VIRUS; VESICULOVIRUS; VIRAL HEMORRHAGIC SEPTICEMIA VIRUS;

EID: 17144445526     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/0168-1702(96)01300-7     Document Type: Article

References (55)

1. Anilionis, A., Wunner, W.H. and Curtis, P.J. (1982) Amino acid sequence of the rabies virus glycoprotein deduced from its cloned gene. Comp. Immunol. Microbiol. Infect. Dis. 5, 27-32.
2. Benmansour, A., Paubert, G., Bernard, J. and de Kinkelin, P. (1994) The polymerase-associated protein (M1) and the matrix protein (M2) from a virulent and avirulent strain of viral hemorrhagic septicemia virus (VHSV), a fish rhabdovirus. Virology 198, 602-612.
3. Bourhy, H., Kissi, B. and Tordo, N. (1993) Molecular diversity of the Lyssavirus genus. Virology 194, 70-81.
4. Castric, J., Rasschaert, D. and Bernard, J. (1984) Evidence of lyssaviruses among rhabdovirus isolates from the European eel Anguilla anguilla. Ann. Virol. (Inst. Pasteur) 135 E. 35 55.
5. Clerx, J.P.M. and Horzinek, M.C. (1978) Comparative protein analysis of non salmonid fish rhabdoviruses. J. Gen. Virol. 40, 287-295.
6. Conzelmann, K.-K., Cox, J.H., Schneider, L.G. and Thiel, H.-J. (1990) Molecular cloning and complete nucleotide sequence of the attenuated rabies virus SAD B19. Virology 175, 485-499.
7. Dayhoff, M.O., Schwartz, R.M. and Orcutt, B.C. (1978) In: M.O. Dayhoff (Ed.), Atlas of Protein Sequence and Structure. Vol. 5, Suppl. 3. NBRF, Washington, p. 345.
8. Felsenstein, J. (1993) PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
9. Fijan, N., Pertinec, Z., Sulimanovic, D. and Zwillenberg, L.O. (1971) Isolation of the viral causative agent from the acute form of infectious dropsy of carp. Vet. Arh. 41, 125-138.
10. Francki, R.I.B., Fauquet, C.M., Knudson, D.L. and Brown, F. (Eds.) (1991) Classification and Nomenclature of Viruses. Fifth report of the International Committee on Taxonomy of Viruses. Arch. Virol., Suppl. 2, p. 450.
11. Gallione, C.J., and Rose, J. K. (1983) Nucleotide sequence of a cDNA clone encoding the entire glycoprotein from the New Jersey serotype of vesicular stomatitis virus. J. Virol. 46, 162-169.
12. Gilmore, R D. and Leong, J. (1988) The nucleocapsid gene of infectious hematopoietic necrosis virus, a fish rhabdovirus. Virology 167, 644-648.
13. Goldberg, K.-B., Modrell, B., Hillman, B.I., Heaton, L.A., Choi, T.-J. and Jackson, A.O. (1991) Structure of the glycoprotein gene of sonchus yellow net virus, a plant rhabdovirus. Virology 185, 32-38.
14. Gubler, U. and Hoffman, B. (1983) A simple and very efficient method for generating cDNA libraries. Gene 25, 263-269.
15. Higgins, D.G., Bleasby, A.J. and Fuchs, R. (1991) CLUSTAL V: improved software for multiple sequence alignment. CABIOS 8, 189-191.
16. Hill, B. J., Underwood, B.O., Smale, C. J. and Brown, F. (1975) Physico-chemical and serological characterization of five rhabdoviruses infecting fish. J. Gen. Virol. 27, 369-378.
17. Kimura, T., Yoshimizu, M. and Gorie, S. (1986) A new rhabdovirus isolated in Japan from cultured hirame (Japanese flounder) Paralichthys olivaceus and ayu Plecoglossus altivelis. Dis. Aquat. Org. 1, 209-217.
18. Kimura, T., Yoshimizu, M., Oseko, N. and Nishizawa, T. (1989) Rhabdovirus olivaceus (Hirame rhabdovirus). In: W. Ahne and E. Kurstak (Eds.), Viruses of Lower Vertebrates. Springer-Verlag, Berlin, pp. 388-395.
19. Kiuchi, A. and Roy, P. (1984) Comparison of the primary sequence of spring viremia of carp virus M protein with that of vesicular stomatitis virus. Virology 134, 238-243.
20. Koener, J.F., Passavant, C.W., Kurath, G. and Leong, J. (1987) Nucleotide sequence of a cDNA clone carrying the glycoprotein gene of infectious hematopoietic necrosis virus, a fish rhabdovirus. J. Virol. 61, 1342-1349.
21. Kozak, M. (1986) Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes. Cell 44, 283-292.
22. Kurath, G., Ahern, K.G., Pearson, G.D. and Leong, J.C. (1985) Molecular cloning of the six mRNA species of infectious hematopoietic necrosis virus, a fish rhabdovirus, and gene order determination by R-loop mapping. J. Virol. 53, 469-476.
23. Kurath, G. and Leong, J.C. (1985) Characterization of infectious hematopoietic necrosis virus mRNA species reveals a nonvirion rhabdovirus protein. J. Virol. 53, 462-468.
24. Kyte, J. and Doolittle, R.F. (1982) A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157, 105-132.
25. Lenoir, G. and de Kinkelin, P. (1975) Fish rhabdoviruses: comparative study of protein structure. J. Virol. 16, 259-262.
26. Leong, J.C., Hsu, Y.L., Engelking, H.M. and Mulcahy, D. (1981) Strains of infectious hematopoietic necrosis (IHN) virus may be identified by structural protein differences. Dev. Biol. Stand. 49, 43-55.
27. Lorenzen, N., Olesen, N.J., Vestergård Jørgensen, P.E., Etzerodt, M., Holtet, T. L. and Thorgesen, H.C. (1993) Molecular cloning and expression in Escherichia coli of the glycoprotein gene of VHS virus, and immunization of rainbow trout with the recombinant protein. J. Gen. Virol. 74, 623-630.
28. Masters, P.S., Bhella, R.S., Butcher, M., Patel, B., Ghosh, H.P. and Banerjee, A.K. (1989) Structure and expression of the glycoprotein gene of Chandipura virus. Virology 171, 285-290.
29. Morimoto, K., Kawai, A. and Mifune, K. (1992) Comparison of rabies virus G proteins produced by cDNA-transfected animal cells that display either inducible or constitutive expression of the G gene. J. Gen. Virol. 73, 335-345.
30. Morzunov, S.P., Winton, J.R. and Nichol, S.T. (1995) The complete genome structure and phylogenetic relationship of infectious hematopoietic necrosis virus. Virus Res. 38, 175-192.
31. Nishizawa, T., Kurath, G. and Winton, J.R. (1995) Nucleotide sequence of the two matrix protein genes (M1 and M2) of hirame rhabdovirus (HRV), a fish rhabdovirus. Vet. Res. 26, 408-412.
32. Nishizawa, T., Yoshimizu, M., Winton, J., Ahne, W., and Kimura, T. (1991) Characterization of structural proteins of hirame rhabdovirus. HRV. Dis. Aquat. Org. 10, 167-172.
33. Poch, O., Blumberg, B.M., Bougueleret, L. and Tordo, N. (1990) Sequence comparison of five polymerases (L proteins) of unsegmented negative-stranded RNA viruses: theoretical assignment of functional domains. J. Gen. Virol. 71, 1153-1162.
34. Pustell, J. and Kafatos, F.C. (1984) A convenient and adaptable package of computer programs for DNA and protein sequence management, analysis, and homology determination. Nucl. Acids Res. 12, 643-655.
35. Rose, J.K. (1980) Complete intergenic and flanking gene sequences from the genome of vesicular stomatitis virus. Cell 19, 415-421.
36. Rose, J.K., Doolittle, R.F., Anilionis, A.A., Curtis, P.J. and Wunner, W.H. (1982) Homology between the glycoproteins of vesicular stomatitis virus and rabies virus. J. Virol. 43, 361-364.
37. Rose, J.K. and Gallione, C.J. (1981) Nucleotide sequence of the mRNAs encoding the vesicular stomatitis virus G and M proteins determined from cDNA clones containing the complete coding regions. J. Virol. 39, 519-528.
38. Roy, P. (1981) Phosphoproteins of spring viremia of carp virus. Virology 112, 274-281.
39. Roy, P., Gupta, K.C. and Kiuchi, A. (1984) Characterization of spring viremia of carp virus mRNA species and the 3′ sequence of the viral RNA. Virus Res. 1, 189-202.
40. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
41. Smail, D.M. and Munro, A.L.S. (1989) The virology of teleosts. In: R.J. Roberts (Ed.), Fish Pathology, 2nd edn. Bailliere Tindall, London, pp. 173-241.
42. Sokol, F., Clark, H.F., Wiktor, T.J., McFalls, M.L., Bishop, D.H.L. and Obijeski, J.F. (1974) Structural phosphoproteins associated with ten rhabdoviruses. J. Gen. Virol. 24, 433-445.
43. 2 sensitivity agent of Drosophila: nucleotide sequence of a cDNA clone encoding the glycoprotein. J. Gen. Virol. 68, 2625-2638.
44. Thiry, M., Lecoq-Xhonneux, F., Dheur, I., Renard, A. and de Kinkelin, P. (1991) Sequence of a cDNA carrying the glycoprotein gene and part of the matrix protein M2 gene of viral hemorrhagic septicaemia virus, a fish rhabdovirus. Biochim. Biophys. Acta 1090, 345-347.
45. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22, 4673-4680.
46. Tordo, N., Bourhy, H., Sather, S. and Ollo, R. (1993) Structure and expression in baculovirus of the Mokola virus glycoprotein: an efficient recombinant vaccine. Virology 194, 59-69.
47. Tordo, N., Poch, O., Ermine, A., Keith, G. and Rougeon, F. (1986) Walking along the rabies genome: Is the large G-L intergenic region a remnant gene? Proc. Natl. Acad. Sci. USA 83, 3914-3918.
48. Walker, P.J., Byrne, K.A., Riding, G.A., Cowley, J.A., Wang, Y. and McWilliams, S. (1992) The genome of bovine ephemeral fever rhabdovirus contains two related glycoprotein genes. Virology 191, 49-61.
49. Wang, Y., Cowley, J.A. and Walker, P.J. (1995) Adelaide River virus nucleoprotein gene: analysis of phylogenetic relationships of ephemeroviruses and other rhabdoviruses. J. Gen. Virol. 76, 995-999.
50. Wang, Y. and Walker, P.J. (1993) Adelaide river rhabdovirus expresses consecutive glycoprotein genes as polysistronic mRNAs: new evidence of gene duplication as an evolutionary process. Virology 195, 719-731.
51. Winton, J.R. (1989) Picornaviruses and reoviruses of fishes. In: W. Ahne and E. Kurstak (Eds.), Viruses of Lower Vertebrates. Springer-Verlag, Berlin, pp. 217-226.
52. Wolf, K. (1988) Fish Viruses and Fish Viral Diseases. Cornell University Press, Ithaca, New York, p. 476.
53. Wu, J.-G., Kiuchi, A. and Roy, P. (1987) Intergenic sequences and gene order (N-M-G) of spring viremia of carp virus. In: B.W.J. Mahy and D. Kolakofsky (Eds.), The Biology of Negative Strand Viruses. Elsevier, Amsterdam, PP. 221-226.
54. Wunner, W.H., Calisher, C.H., Dietzgen, R.G., Jackson, A.O., Kitajima, E.W. and Lafon, M.F. et al. (1995) Family Rhabdoviridae. In: Virus Taxonomy. Classification and Nomenclature of Viruses, Sixth Report of the International Committee on Taxonomy of Viruses. Springer-Verlag, New York, pp. 275-288.
55. Wunner, W.H., Dietzschold, B., Smith, C.L., Lafon, M., and Golub, E. (1985) Antigenic variants of CVS rabies virus with altered glycosylation sites. Virology 140, 1-12.